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BioLiP
Download all results in tab-seperated text for 72 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7wfd:A1 (3.25) BS01 CLA ? GO:0003729 ... Q01667 35123031
    2 7wfd:AA (3.25) BS45 CLA 1.97.1.12 GO:0000287 ... P56766 35123031
    3 7wfd:AA (3.25) BS46 CLA 1.97.1.12 GO:0000287 ... P56766 35123031
    4 7wfd:AA (3.25) BS47 CLA 1.97.1.12 GO:0000287 ... P56766 35123031
    5 7wfd:AA (3.25) BS48 CLA 1.97.1.12 GO:0000287 ... P56766 35123031
    6 7wfd:AA (3.25) BS49 CLA 1.97.1.12 GO:0000287 ... P56766 35123031
    7 7wfd:AA (3.25) BS50 CLA 1.97.1.12 GO:0000287 ... P56766 35123031
    8 7wfd:AB (3.25) BS01 CLA 1.97.1.12 GO:0000287 ... P56767 35123031
    9 7wfd:AB (3.25) BS02 CLA 1.97.1.12 GO:0000287 ... P56767 35123031
    10 7wfd:AB (3.25) BS03 CLA 1.97.1.12 GO:0000287 ... P56767 35123031
    11 7wfd:AB (3.25) BS04 CLA 1.97.1.12 GO:0000287 ... P56767 35123031
    12 7wfd:AB (3.25) BS05 CLA 1.97.1.12 GO:0000287 ... P56767 35123031
    13 7wfd:AB (3.25) BS06 CLA 1.97.1.12 GO:0000287 ... P56767 35123031
    14 7wfd:AB (3.25) BS07 SF4 1.97.1.12 GO:0000287 ... P56767 35123031
    15 7wfd:AB (3.25) BS08 CLA 1.97.1.12 GO:0000287 ... P56767 35123031
    16 7wfd:AB (3.25) BS09 CLA 1.97.1.12 GO:0000287 ... P56767 35123031
    17 7wfd:AB (3.25) BS10 CLA 1.97.1.12 GO:0000287 ... P56767 35123031
    18 7wfd:AB (3.25) BS11 CLA 1.97.1.12 GO:0000287 ... P56767 35123031
    19 7wfd:AB (3.25) BS12 CLA 1.97.1.12 GO:0000287 ... P56767 35123031
    20 7wfd:AB (3.25) BS13 CLA 1.97.1.12 GO:0000287 ... P56767 35123031
    21 7wfd:AB (3.25) BS14 CLA 1.97.1.12 GO:0000287 ... P56767 35123031
    22 7wfd:AB (3.25) BS15 CLA 1.97.1.12 GO:0000287 ... P56767 35123031
    23 7wfd:AB (3.25) BS16 CLA 1.97.1.12 GO:0000287 ... P56767 35123031
    24 7wfd:AB (3.25) BS17 CLA 1.97.1.12 GO:0000287 ... P56767 35123031
    25 7wfd:AB (3.25) BS18 CLA 1.97.1.12 GO:0000287 ... P56767 35123031
    26 7wfd:AB (3.25) BS19 CLA 1.97.1.12 GO:0000287 ... P56767 35123031
    27 7wfd:AB (3.25) BS20 CLA 1.97.1.12 GO:0000287 ... P56767 35123031
    28 7wfd:AB (3.25) BS21 CLA 1.97.1.12 GO:0000287 ... P56767 35123031
    29 7wfd:AB (3.25) BS22 CLA 1.97.1.12 GO:0000287 ... P56767 35123031
    30 7wfd:AB (3.25) BS23 CLA 1.97.1.12 GO:0000287 ... P56767 35123031
    31 7wfd:AB (3.25) BS24 CLA 1.97.1.12 GO:0000287 ... P56767 35123031
    32 7wfd:AB (3.25) BS25 CLA 1.97.1.12 GO:0000287 ... P56767 35123031
    33 7wfd:AB (3.25) BS26 CLA 1.97.1.12 GO:0000287 ... P56767 35123031
    34 7wfd:AB (3.25) BS27 CLA 1.97.1.12 GO:0000287 ... P56767 35123031
    35 7wfd:AB (3.25) BS28 CLA 1.97.1.12 GO:0000287 ... P56767 35123031
    36 7wfd:AB (3.25) BS29 CLA 1.97.1.12 GO:0000287 ... P56767 35123031
    37 7wfd:AB (3.25) BS30 CLA 1.97.1.12 GO:0000287 ... P56767 35123031
    38 7wfd:AB (3.25) BS31 CLA 1.97.1.12 GO:0000287 ... P56767 35123031
    39 7wfd:AB (3.25) BS32 CLA 1.97.1.12 GO:0000287 ... P56767 35123031
    40 7wfd:AB (3.25) BS33 CLA 1.97.1.12 GO:0000287 ... P56767 35123031
    41 7wfd:AB (3.25) BS34 CLA 1.97.1.12 GO:0000287 ... P56767 35123031
    42 7wfd:AB (3.25) BS35 CLA 1.97.1.12 GO:0000287 ... P56767 35123031
    43 7wfd:AB (3.25) BS36 CLA 1.97.1.12 GO:0000287 ... P56767 35123031
    44 7wfd:AB (3.25) BS37 CLA 1.97.1.12 GO:0000287 ... P56767 35123031
    45 7wfd:AB (3.25) BS38 CLA 1.97.1.12 GO:0000287 ... P56767 35123031
    46 7wfd:AB (3.25) BS39 CLA 1.97.1.12 GO:0000287 ... P56767 35123031
    47 7wfd:AB (3.25) BS40 CLA 1.97.1.12 GO:0000287 ... P56767 35123031
    48 7wfd:AB (3.25) BS41 CLA 1.97.1.12 GO:0000287 ... P56767 35123031
    49 7wfd:AB (3.25) BS42 CLA 1.97.1.12 GO:0000287 ... P56767 35123031
    50 7wfd:AB (3.25) BS43 CLA 1.97.1.12 GO:0000287 ... P56767 35123031
    51 7wfd:AB (3.25) BS44 CLA 1.97.1.12 GO:0000287 ... P56767 35123031
    52 7wfd:AB (3.25) BS45 CLA 1.97.1.12 GO:0000287 ... P56767 35123031
    53 7wfd:AB (3.25) BS46 CLA 1.97.1.12 GO:0000287 ... P56767 35123031
    54 7wfd:AB (3.25) BS47 CLA 1.97.1.12 GO:0000287 ... P56767 35123031
    55 7wfd:AB (3.25) BS48 CLA 1.97.1.12 GO:0000287 ... P56767 35123031
    56 7wfd:AB (3.25) BS49 CLA 1.97.1.12 GO:0000287 ... P56767 35123031
    57 7wfd:AB (3.25) BS50 PQN 1.97.1.12 GO:0000287 ... P56767 35123031
    58 7wfd:AB (3.25) BS51 CLA 1.97.1.12 GO:0000287 ... P56767 35123031
    59 7wfd:AB (3.25) BS52 CLA 1.97.1.12 GO:0000287 ... P56767 35123031
    60 7wfd:AF (3.25) BS02 CLA ? GO:0003729 ... Q9SHE8 35123031
    61 7wfd:AF (3.25) BS03 CLA ? GO:0003729 ... Q9SHE8 35123031
    62 7wfd:AF (3.25) BS04 CLA ? GO:0003729 ... Q9SHE8 35123031
    63 7wfd:AG (3.25) BS01 CLA ? GO:0005515 ... Q9S7N7 35123031
    64 7wfd:AG (3.25) BS02 CLA ? GO:0005515 ... Q9S7N7 35123031
    65 7wfd:AG (3.25) BS03 CLA ? GO:0005515 ... Q9S7N7 35123031
    66 7wfd:AH (3.25) BS01 CLA ? GO:0005634 ... Q9SUI6 35123031
    67 7wfd:AI (3.25) BS01 CLA ? GO:0003674 ... P56768 35123031
    68 7wfd:AI (3.25) BS02 CLA ? GO:0003674 ... P56768 35123031
    69 7wfd:AJ (3.25) BS02 CLA ? GO:0003674 ... P56769 35123031
    70 7wfd:AL (3.25) BS05 CLA ? GO:0003729 ... Q9SUI4 35123031
    71 7wfd:AL (3.25) BS06 CLA ? GO:0003729 ... Q9SUI4 35123031
    72 7wfd:AL (3.25) BS07 CLA ? GO:0003729 ... Q9SUI4 35123031
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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