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BioLiP
Download all results in tab-seperated text for 63 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7y5e:32 (3.3) BS11 CLA ? GO:0009765 ... A0A5J4YYC4 36922595
    2 7y5e:A2 (3.3) BS01 CLA 1.97.1.12 GO:0000287 ... W0S1N1 36922595
    3 7y5e:A2 (3.3) BS02 CLA 1.97.1.12 GO:0000287 ... W0S1N1 36922595
    4 7y5e:A2 (3.3) BS03 CLA 1.97.1.12 GO:0000287 ... W0S1N1 36922595
    5 7y5e:A2 (3.3) BS04 CLA 1.97.1.12 GO:0000287 ... W0S1N1 36922595
    6 7y5e:A2 (3.3) BS05 CLA 1.97.1.12 GO:0000287 ... W0S1N1 36922595
    7 7y5e:A2 (3.3) BS06 CLA 1.97.1.12 GO:0000287 ... W0S1N1 36922595
    8 7y5e:A2 (3.3) BS07 CLA 1.97.1.12 GO:0000287 ... W0S1N1 36922595
    9 7y5e:A2 (3.3) BS08 CLA 1.97.1.12 GO:0000287 ... W0S1N1 36922595
    10 7y5e:A2 (3.3) BS09 CLA 1.97.1.12 GO:0000287 ... W0S1N1 36922595
    11 7y5e:A2 (3.3) BS10 CLA 1.97.1.12 GO:0000287 ... W0S1N1 36922595
    12 7y5e:A2 (3.3) BS11 CLA 1.97.1.12 GO:0000287 ... W0S1N1 36922595
    13 7y5e:A2 (3.3) BS12 CLA 1.97.1.12 GO:0000287 ... W0S1N1 36922595
    14 7y5e:A2 (3.3) BS13 CLA 1.97.1.12 GO:0000287 ... W0S1N1 36922595
    15 7y5e:A2 (3.3) BS14 CLA 1.97.1.12 GO:0000287 ... W0S1N1 36922595
    16 7y5e:A2 (3.3) BS15 CLA 1.97.1.12 GO:0000287 ... W0S1N1 36922595
    17 7y5e:A2 (3.3) BS16 CLA 1.97.1.12 GO:0000287 ... W0S1N1 36922595
    18 7y5e:A2 (3.3) BS17 CLA 1.97.1.12 GO:0000287 ... W0S1N1 36922595
    19 7y5e:A2 (3.3) BS18 CLA 1.97.1.12 GO:0000287 ... W0S1N1 36922595
    20 7y5e:A2 (3.3) BS19 CLA 1.97.1.12 GO:0000287 ... W0S1N1 36922595
    21 7y5e:A2 (3.3) BS20 CLA 1.97.1.12 GO:0000287 ... W0S1N1 36922595
    22 7y5e:A2 (3.3) BS21 CLA 1.97.1.12 GO:0000287 ... W0S1N1 36922595
    23 7y5e:A2 (3.3) BS22 CLA 1.97.1.12 GO:0000287 ... W0S1N1 36922595
    24 7y5e:A2 (3.3) BS23 CLA 1.97.1.12 GO:0000287 ... W0S1N1 36922595
    25 7y5e:A2 (3.3) BS24 CLA 1.97.1.12 GO:0000287 ... W0S1N1 36922595
    26 7y5e:A2 (3.3) BS25 CLA 1.97.1.12 GO:0000287 ... W0S1N1 36922595
    27 7y5e:A2 (3.3) BS26 CLA 1.97.1.12 GO:0000287 ... W0S1N1 36922595
    28 7y5e:A2 (3.3) BS27 CLA 1.97.1.12 GO:0000287 ... W0S1N1 36922595
    29 7y5e:A2 (3.3) BS28 CLA 1.97.1.12 GO:0000287 ... W0S1N1 36922595
    30 7y5e:A2 (3.3) BS29 CLA 1.97.1.12 GO:0000287 ... W0S1N1 36922595
    31 7y5e:A2 (3.3) BS30 CLA 1.97.1.12 GO:0000287 ... W0S1N1 36922595
    32 7y5e:A2 (3.3) BS31 CLA 1.97.1.12 GO:0000287 ... W0S1N1 36922595
    33 7y5e:A2 (3.3) BS32 CLA 1.97.1.12 GO:0000287 ... W0S1N1 36922595
    34 7y5e:A2 (3.3) BS33 CLA 1.97.1.12 GO:0000287 ... W0S1N1 36922595
    35 7y5e:A2 (3.3) BS34 CLA 1.97.1.12 GO:0000287 ... W0S1N1 36922595
    36 7y5e:A2 (3.3) BS35 CLA 1.97.1.12 GO:0000287 ... W0S1N1 36922595
    37 7y5e:A2 (3.3) BS36 CLA 1.97.1.12 GO:0000287 ... W0S1N1 36922595
    38 7y5e:A2 (3.3) BS37 CLA 1.97.1.12 GO:0000287 ... W0S1N1 36922595
    39 7y5e:A2 (3.3) BS38 CLA 1.97.1.12 GO:0000287 ... W0S1N1 36922595
    40 7y5e:A2 (3.3) BS39 CLA 1.97.1.12 GO:0000287 ... W0S1N1 36922595
    41 7y5e:A2 (3.3) BS40 PQN 1.97.1.12 GO:0000287 ... W0S1N1 36922595
    42 7y5e:A2 (3.3) BS41 CLA 1.97.1.12 GO:0000287 ... W0S1N1 36922595
    43 7y5e:A2 (3.3) BS42 CLA 1.97.1.12 GO:0000287 ... W0S1N1 36922595
    44 7y5e:A2 (3.3) BS43 CLA 1.97.1.12 GO:0000287 ... W0S1N1 36922595
    45 7y5e:A2 (3.3) BS44 SF4 1.97.1.12 GO:0000287 ... W0S1N1 36922595
    46 7y5e:A2 (3.3) BS45 CLA 1.97.1.12 GO:0000287 ... W0S1N1 36922595
    47 7y5e:A2 (3.3) BS46 CLA 1.97.1.12 GO:0000287 ... W0S1N1 36922595
    48 7y5e:A2 (3.3) BS47 CLA 1.97.1.12 GO:0000287 ... W0S1N1 36922595
    49 7y5e:A2 (3.3) BS48 CLA 1.97.1.12 GO:0000287 ... W0S1N1 36922595
    50 7y5e:A2 (3.3) BS49 CLA 1.97.1.12 GO:0000287 ... W0S1N1 36922595
    51 7y5e:A2 (3.3) BS50 CLA 1.97.1.12 GO:0000287 ... W0S1N1 36922595
    52 7y5e:A2 (3.3) BS51 CLA 1.97.1.12 GO:0000287 ... W0S1N1 36922595
    53 7y5e:B2 (3.3) BS02 CLA 1.97.1.12 GO:0000287 ... W0RYU6 36922595
    54 7y5e:B2 (3.3) BS03 CLA 1.97.1.12 GO:0000287 ... W0RYU6 36922595
    55 7y5e:B2 (3.3) BS04 CLA 1.97.1.12 GO:0000287 ... W0RYU6 36922595
    56 7y5e:B2 (3.3) BS05 CLA 1.97.1.12 GO:0000287 ... W0RYU6 36922595
    57 7y5e:B2 (3.3) BS06 CLA 1.97.1.12 GO:0000287 ... W0RYU6 36922595
    58 7y5e:F2 (3.3) BS02 CLA ? GO:0009522 ... W0RZ71 36922595
    59 7y5e:F2 (3.3) BS03 CLA ? GO:0009522 ... W0RZ71 36922595
    60 7y5e:J2 (3.3) BS01 CLA ? GO:0009507 ... W0RYG9 36922595
    61 7y5e:L2 (3.3) BS02 CLA ? GO:0009507 ... W0S1Z0 36922595
    62 7y5e:L2 (3.3) BS03 CLA ? GO:0009507 ... W0S1Z0 36922595
    63 7y5e:O2 (3.3) BS01 CLA ? N/A A0A5J4YUC8 36922595
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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