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BioLiP
Download all results in tab-seperated text for 19 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8bgw:A (2.2) BS01 HEM N/A GO:0004129 ... N/A 37296134
    2 8bgw:A (2.2) BS02 HEM N/A GO:0004129 ... N/A 37296134
    3 8bgw:A (2.2) BS03 FE N/A GO:0004129 ... N/A 37296134
    4 8bgw:A (2.2) BS04 CA N/A GO:0004129 ... N/A 37296134
    5 8bgw:A (2.2) BS05 10M N/A GO:0004129 ... N/A 37296134
    6 8bgw:A (2.2) BS06 UQ1 N/A GO:0004129 ... N/A 37296134
    7 8bgw:A (2.2) BS07 LOP N/A GO:0004129 ... N/A 37296134
    8 8bgw:A (2.2) BS08 LOP N/A GO:0004129 ... N/A 37296134
    9 8bgw:A (2.2) BS09 LOP N/A GO:0004129 ... N/A 37296134
    10 8bgw:A (2.2) BS10 LOP N/A GO:0004129 ... N/A 37296134
    11 8bgw:A (2.2) BS11 LOP N/A GO:0004129 ... N/A 37296134
    12 8bgw:A (2.2) BS12 LOP N/A GO:0004129 ... N/A 37296134
    13 8bgw:A (2.2) BS13 10M N/A GO:0004129 ... N/A 37296134
    14 8bgw:A (2.2) BS14 LOP N/A GO:0004129 ... N/A 37296134
    15 8bgw:A (2.2) BS15 LOP N/A GO:0004129 ... N/A 37296134
    16 8bgw:B (2.2) BS01 10M N/A GO:0004129 ... N/A 37296134
    17 8bgw:B (2.2) BS02 LOP N/A GO:0004129 ... N/A 37296134
    18 8bgw:B (2.2) BS03 LOP N/A GO:0004129 ... N/A 37296134
    19 8bgw:B (2.2) BS04 LOP N/A GO:0004129 ... N/A 37296134
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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