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BioLiP
Download all results in tab-seperated text for 74 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7y8a:A (2.71) BS01 CLA 1.97.1.12 GO:0000287 ... A0A222AIB4 36943796
    2 7y8a:A (2.71) BS02 CLA 1.97.1.12 GO:0000287 ... A0A222AIB4 36943796
    3 7y8a:A (2.71) BS03 CLA 1.97.1.12 GO:0000287 ... A0A222AIB4 36943796
    4 7y8a:A (2.71) BS04 CLA 1.97.1.12 GO:0000287 ... A0A222AIB4 36943796
    5 7y8a:A (2.71) BS05 CLA 1.97.1.12 GO:0000287 ... A0A222AIB4 36943796
    6 7y8a:A (2.71) BS06 CLA 1.97.1.12 GO:0000287 ... A0A222AIB4 36943796
    7 7y8a:A (2.71) BS07 CLA 1.97.1.12 GO:0000287 ... A0A222AIB4 36943796
    8 7y8a:A (2.71) BS08 CLA 1.97.1.12 GO:0000287 ... A0A222AIB4 36943796
    9 7y8a:A (2.71) BS09 CLA 1.97.1.12 GO:0000287 ... A0A222AIB4 36943796
    10 7y8a:A (2.71) BS10 CLA 1.97.1.12 GO:0000287 ... A0A222AIB4 36943796
    11 7y8a:A (2.71) BS11 CLA 1.97.1.12 GO:0000287 ... A0A222AIB4 36943796
    12 7y8a:A (2.71) BS12 CLA 1.97.1.12 GO:0000287 ... A0A222AIB4 36943796
    13 7y8a:A (2.71) BS13 CLA 1.97.1.12 GO:0000287 ... A0A222AIB4 36943796
    14 7y8a:A (2.71) BS14 CLA 1.97.1.12 GO:0000287 ... A0A222AIB4 36943796
    15 7y8a:A (2.71) BS15 CLA 1.97.1.12 GO:0000287 ... A0A222AIB4 36943796
    16 7y8a:A (2.71) BS16 CLA 1.97.1.12 GO:0000287 ... A0A222AIB4 36943796
    17 7y8a:A (2.71) BS17 CLA 1.97.1.12 GO:0000287 ... A0A222AIB4 36943796
    18 7y8a:A (2.71) BS18 CLA 1.97.1.12 GO:0000287 ... A0A222AIB4 36943796
    19 7y8a:A (2.71) BS19 CLA 1.97.1.12 GO:0000287 ... A0A222AIB4 36943796
    20 7y8a:A (2.71) BS20 CLA 1.97.1.12 GO:0000287 ... A0A222AIB4 36943796
    21 7y8a:A (2.71) BS21 CLA 1.97.1.12 GO:0000287 ... A0A222AIB4 36943796
    22 7y8a:A (2.71) BS22 CLA 1.97.1.12 GO:0000287 ... A0A222AIB4 36943796
    23 7y8a:A (2.71) BS23 CLA 1.97.1.12 GO:0000287 ... A0A222AIB4 36943796
    24 7y8a:A (2.71) BS24 CLA 1.97.1.12 GO:0000287 ... A0A222AIB4 36943796
    25 7y8a:A (2.71) BS25 CLA 1.97.1.12 GO:0000287 ... A0A222AIB4 36943796
    26 7y8a:A (2.71) BS26 CLA 1.97.1.12 GO:0000287 ... A0A222AIB4 36943796
    27 7y8a:A (2.71) BS27 CLA 1.97.1.12 GO:0000287 ... A0A222AIB4 36943796
    28 7y8a:A (2.71) BS28 CLA 1.97.1.12 GO:0000287 ... A0A222AIB4 36943796
    29 7y8a:A (2.71) BS29 CLA 1.97.1.12 GO:0000287 ... A0A222AIB4 36943796
    30 7y8a:A (2.71) BS30 CLA 1.97.1.12 GO:0000287 ... A0A222AIB4 36943796
    31 7y8a:A (2.71) BS31 CLA 1.97.1.12 GO:0000287 ... A0A222AIB4 36943796
    32 7y8a:A (2.71) BS32 CLA 1.97.1.12 GO:0000287 ... A0A222AIB4 36943796
    33 7y8a:A (2.71) BS33 CLA 1.97.1.12 GO:0000287 ... A0A222AIB4 36943796
    34 7y8a:A (2.71) BS34 CLA 1.97.1.12 GO:0000287 ... A0A222AIB4 36943796
    35 7y8a:A (2.71) BS35 CLA 1.97.1.12 GO:0000287 ... A0A222AIB4 36943796
    36 7y8a:A (2.71) BS36 CLA 1.97.1.12 GO:0000287 ... A0A222AIB4 36943796
    37 7y8a:A (2.71) BS37 CLA 1.97.1.12 GO:0000287 ... A0A222AIB4 36943796
    38 7y8a:A (2.71) BS38 CLA 1.97.1.12 GO:0000287 ... A0A222AIB4 36943796
    39 7y8a:A (2.71) BS39 CLA 1.97.1.12 GO:0000287 ... A0A222AIB4 36943796
    40 7y8a:A (2.71) BS40 CLA 1.97.1.12 GO:0000287 ... A0A222AIB4 36943796
    41 7y8a:A (2.71) BS41 CLA 1.97.1.12 GO:0000287 ... A0A222AIB4 36943796
    42 7y8a:A (2.71) BS42 CLA 1.97.1.12 GO:0000287 ... A0A222AIB4 36943796
    43 7y8a:A (2.71) BS43 CLA 1.97.1.12 GO:0000287 ... A0A222AIB4 36943796
    44 7y8a:A (2.71) BS44 CLA 1.97.1.12 GO:0000287 ... A0A222AIB4 36943796
    45 7y8a:A (2.71) BS45 8CT 1.97.1.12 GO:0000287 ... A0A222AIB4 36943796
    46 7y8a:A (2.71) BS46 8CT 1.97.1.12 GO:0000287 ... A0A222AIB4 36943796
    47 7y8a:A (2.71) BS47 8CT 1.97.1.12 GO:0000287 ... A0A222AIB4 36943796
    48 7y8a:A (2.71) BS48 8CT 1.97.1.12 GO:0000287 ... A0A222AIB4 36943796
    49 7y8a:A (2.71) BS49 SF4 1.97.1.12 GO:0000287 ... A0A222AIB4 36943796
    50 7y8a:A (2.71) BS50 PQN 1.97.1.12 GO:0000287 ... A0A222AIB4 36943796
    51 7y8a:A (2.71) BS51 IHT 1.97.1.12 GO:0000287 ... A0A222AIB4 36943796
    52 7y8a:A (2.71) BS52 CLA 1.97.1.12 GO:0000287 ... A0A222AIB4 36943796
    53 7y8a:A (2.71) BS53 CLA 1.97.1.12 GO:0000287 ... A0A222AIB4 36943796
    54 7y8a:A (2.71) BS54 CLA 1.97.1.12 GO:0000287 ... A0A222AIB4 36943796
    55 7y8a:A (2.71) BS55 CLA 1.97.1.12 GO:0000287 ... A0A222AIB4 36943796
    56 7y8a:A (2.71) BS56 II0 1.97.1.12 GO:0000287 ... A0A222AIB4 36943796
    57 7y8a:A (2.71) BS57 CLA 1.97.1.12 GO:0000287 ... A0A222AIB4 36943796
    58 7y8a:B (2.71) BS02 CLA 1.97.1.12 GO:0000287 ... A0A222AI95 36943796
    59 7y8a:B (2.71) BS03 CLA 1.97.1.12 GO:0000287 ... A0A222AI95 36943796
    60 7y8a:B (2.71) BS04 CLA 1.97.1.12 GO:0000287 ... A0A222AI95 36943796
    61 7y8a:B (2.71) BS05 CLA 1.97.1.12 GO:0000287 ... A0A222AI95 36943796
    62 7y8a:B (2.71) BS06 CLA 1.97.1.12 GO:0000287 ... A0A222AI95 36943796
    63 7y8a:B (2.71) BS07 CLA 1.97.1.12 GO:0000287 ... A0A222AI95 36943796
    64 7y8a:B (2.71) BS08 SF4 1.97.1.12 GO:0000287 ... A0A222AI95 36943796
    65 7y8a:F (2.71) BS03 CLA ? GO:0009522 ... A0A222AI52 36943796
    66 7y8a:J (2.71) BS02 CLA ? GO:0009522 ... A0A222AI55 36943796
    67 7y8a:J (2.71) BS03 CLA ? GO:0009522 ... A0A222AI55 36943796
    68 7y8a:K (2.71) BS01 CLA ? GO:0009522 ... A0A222AI34 36943796
    69 7y8a:K (2.71) BS02 CLA ? GO:0009522 ... A0A222AI34 36943796
    70 7y8a:K (2.71) BS03 CLA ? GO:0009522 ... A0A222AI34 36943796
    71 7y8a:K (2.71) BS04 IHT ? GO:0009522 ... A0A222AI34 36943796
    72 7y8a:L (2.71) BS01 CLA ? GO:0009522 ... A0A222AI68 36943796
    73 7y8a:L (2.71) BS02 CLA ? GO:0009522 ... A0A222AI68 36943796
    74 7y8a:O (2.71) BS01 CLA N/A N/A N/A 36943796
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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