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BioLiP
Download all results in tab-seperated text for 55 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7o1v:A (4.31) BS01 CLA 1.97.1.12 GO:0000287 ... P29254 34472838
    2 7o1v:A (4.31) BS02 CLA 1.97.1.12 GO:0000287 ... P29254 34472838
    3 7o1v:A (4.31) BS03 CLA 1.97.1.12 GO:0000287 ... P29254 34472838
    4 7o1v:A (4.31) BS04 CLA 1.97.1.12 GO:0000287 ... P29254 34472838
    5 7o1v:A (4.31) BS05 CLA 1.97.1.12 GO:0000287 ... P29254 34472838
    6 7o1v:A (4.31) BS06 CLA 1.97.1.12 GO:0000287 ... P29254 34472838
    7 7o1v:A (4.31) BS07 CLA 1.97.1.12 GO:0000287 ... P29254 34472838
    8 7o1v:A (4.31) BS08 CLA 1.97.1.12 GO:0000287 ... P29254 34472838
    9 7o1v:A (4.31) BS09 CLA 1.97.1.12 GO:0000287 ... P29254 34472838
    10 7o1v:A (4.31) BS10 CLA 1.97.1.12 GO:0000287 ... P29254 34472838
    11 7o1v:A (4.31) BS11 CLA 1.97.1.12 GO:0000287 ... P29254 34472838
    12 7o1v:A (4.31) BS12 CLA 1.97.1.12 GO:0000287 ... P29254 34472838
    13 7o1v:A (4.31) BS13 CLA 1.97.1.12 GO:0000287 ... P29254 34472838
    14 7o1v:A (4.31) BS14 CLA 1.97.1.12 GO:0000287 ... P29254 34472838
    15 7o1v:A (4.31) BS15 CLA 1.97.1.12 GO:0000287 ... P29254 34472838
    16 7o1v:A (4.31) BS16 CLA 1.97.1.12 GO:0000287 ... P29254 34472838
    17 7o1v:A (4.31) BS17 CLA 1.97.1.12 GO:0000287 ... P29254 34472838
    18 7o1v:A (4.31) BS18 CLA 1.97.1.12 GO:0000287 ... P29254 34472838
    19 7o1v:A (4.31) BS19 CLA 1.97.1.12 GO:0000287 ... P29254 34472838
    20 7o1v:A (4.31) BS20 CLA 1.97.1.12 GO:0000287 ... P29254 34472838
    21 7o1v:A (4.31) BS21 CLA 1.97.1.12 GO:0000287 ... P29254 34472838
    22 7o1v:A (4.31) BS22 CLA 1.97.1.12 GO:0000287 ... P29254 34472838
    23 7o1v:A (4.31) BS23 CLA 1.97.1.12 GO:0000287 ... P29254 34472838
    24 7o1v:A (4.31) BS24 CLA 1.97.1.12 GO:0000287 ... P29254 34472838
    25 7o1v:A (4.31) BS25 CLA 1.97.1.12 GO:0000287 ... P29254 34472838
    26 7o1v:A (4.31) BS26 CLA 1.97.1.12 GO:0000287 ... P29254 34472838
    27 7o1v:A (4.31) BS27 CLA 1.97.1.12 GO:0000287 ... P29254 34472838
    28 7o1v:A (4.31) BS28 CLA 1.97.1.12 GO:0000287 ... P29254 34472838
    29 7o1v:A (4.31) BS29 CLA 1.97.1.12 GO:0000287 ... P29254 34472838
    30 7o1v:A (4.31) BS30 CLA 1.97.1.12 GO:0000287 ... P29254 34472838
    31 7o1v:A (4.31) BS31 CLA 1.97.1.12 GO:0000287 ... P29254 34472838
    32 7o1v:A (4.31) BS32 CLA 1.97.1.12 GO:0000287 ... P29254 34472838
    33 7o1v:A (4.31) BS33 CLA 1.97.1.12 GO:0000287 ... P29254 34472838
    34 7o1v:A (4.31) BS34 CLA 1.97.1.12 GO:0000287 ... P29254 34472838
    35 7o1v:A (4.31) BS35 CLA 1.97.1.12 GO:0000287 ... P29254 34472838
    36 7o1v:A (4.31) BS36 CLA 1.97.1.12 GO:0000287 ... P29254 34472838
    37 7o1v:A (4.31) BS37 CLA 1.97.1.12 GO:0000287 ... P29254 34472838
    38 7o1v:A (4.31) BS38 CLA 1.97.1.12 GO:0000287 ... P29254 34472838
    39 7o1v:A (4.31) BS39 CLA 1.97.1.12 GO:0000287 ... P29254 34472838
    40 7o1v:A (4.31) BS40 CLA 1.97.1.12 GO:0000287 ... P29254 34472838
    41 7o1v:A (4.31) BS41 PQN 1.97.1.12 GO:0000287 ... P29254 34472838
    42 7o1v:A (4.31) BS42 CLA 1.97.1.12 GO:0000287 ... P29254 34472838
    43 7o1v:A (4.31) BS43 SF4 1.97.1.12 GO:0000287 ... P29254 34472838
    44 7o1v:A (4.31) BS44 CLA 1.97.1.12 GO:0000287 ... P29254 34472838
    45 7o1v:A (4.31) BS45 CLA 1.97.1.12 GO:0000287 ... P29254 34472838
    46 7o1v:A (4.31) BS46 CLA 1.97.1.12 GO:0000287 ... P29254 34472838
    47 7o1v:A (4.31) BS47 CLA 1.97.1.12 GO:0000287 ... P29254 34472838
    48 7o1v:A (4.31) BS48 CLA 1.97.1.12 GO:0000287 ... P29254 34472838
    49 7o1v:B (4.31) BS01 CLA 1.97.1.12 GO:0000287 ... P29255 34472838
    50 7o1v:B (4.31) BS02 CLA 1.97.1.12 GO:0000287 ... P29255 34472838
    51 7o1v:B (4.31) BS03 CLA 1.97.1.12 GO:0000287 ... P29255 34472838
    52 7o1v:B (4.31) BS04 CLA 1.97.1.12 GO:0000287 ... P29255 34472838
    53 7o1v:B (4.31) BS05 SF4 1.97.1.12 GO:0000287 ... P29255 34472838
    54 7o1v:K (4.31) BS01 CLA ? GO:0009522 ... P74564 34472838
    55 7o1v:K (4.31) BS02 CLA ? GO:0009522 ... P74564 34472838
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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