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BioLiP
Download all results in tab-seperated text for 58 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7ewk:3 (3.88) BS01 CLA N/A GO:0009765 ... N/A 34879391
    2 7ewk:A (3.88) BS01 CL0 1.97.1.12 GO:0000287 ... A1E9J1 34879391
    3 7ewk:A (3.88) BS02 CLA 1.97.1.12 GO:0000287 ... A1E9J1 34879391
    4 7ewk:A (3.88) BS03 CLA 1.97.1.12 GO:0000287 ... A1E9J1 34879391
    5 7ewk:A (3.88) BS04 CLA 1.97.1.12 GO:0000287 ... A1E9J1 34879391
    6 7ewk:A (3.88) BS05 CLA 1.97.1.12 GO:0000287 ... A1E9J1 34879391
    7 7ewk:A (3.88) BS06 CLA 1.97.1.12 GO:0000287 ... A1E9J1 34879391
    8 7ewk:A (3.88) BS07 CLA 1.97.1.12 GO:0000287 ... A1E9J1 34879391
    9 7ewk:A (3.88) BS08 CLA 1.97.1.12 GO:0000287 ... A1E9J1 34879391
    10 7ewk:A (3.88) BS09 CLA 1.97.1.12 GO:0000287 ... A1E9J1 34879391
    11 7ewk:A (3.88) BS10 CLA 1.97.1.12 GO:0000287 ... A1E9J1 34879391
    12 7ewk:A (3.88) BS11 CLA 1.97.1.12 GO:0000287 ... A1E9J1 34879391
    13 7ewk:A (3.88) BS12 CLA 1.97.1.12 GO:0000287 ... A1E9J1 34879391
    14 7ewk:A (3.88) BS13 CLA 1.97.1.12 GO:0000287 ... A1E9J1 34879391
    15 7ewk:A (3.88) BS14 CLA 1.97.1.12 GO:0000287 ... A1E9J1 34879391
    16 7ewk:A (3.88) BS15 CLA 1.97.1.12 GO:0000287 ... A1E9J1 34879391
    17 7ewk:A (3.88) BS16 CLA 1.97.1.12 GO:0000287 ... A1E9J1 34879391
    18 7ewk:A (3.88) BS17 CLA 1.97.1.12 GO:0000287 ... A1E9J1 34879391
    19 7ewk:A (3.88) BS18 CLA 1.97.1.12 GO:0000287 ... A1E9J1 34879391
    20 7ewk:A (3.88) BS19 CLA 1.97.1.12 GO:0000287 ... A1E9J1 34879391
    21 7ewk:A (3.88) BS20 CLA 1.97.1.12 GO:0000287 ... A1E9J1 34879391
    22 7ewk:A (3.88) BS21 CLA 1.97.1.12 GO:0000287 ... A1E9J1 34879391
    23 7ewk:A (3.88) BS22 CLA 1.97.1.12 GO:0000287 ... A1E9J1 34879391
    24 7ewk:A (3.88) BS23 CLA 1.97.1.12 GO:0000287 ... A1E9J1 34879391
    25 7ewk:A (3.88) BS24 CLA 1.97.1.12 GO:0000287 ... A1E9J1 34879391
    26 7ewk:A (3.88) BS25 CLA 1.97.1.12 GO:0000287 ... A1E9J1 34879391
    27 7ewk:A (3.88) BS26 CLA 1.97.1.12 GO:0000287 ... A1E9J1 34879391
    28 7ewk:A (3.88) BS27 CLA 1.97.1.12 GO:0000287 ... A1E9J1 34879391
    29 7ewk:A (3.88) BS28 CLA 1.97.1.12 GO:0000287 ... A1E9J1 34879391
    30 7ewk:A (3.88) BS29 CLA 1.97.1.12 GO:0000287 ... A1E9J1 34879391
    31 7ewk:A (3.88) BS30 CLA 1.97.1.12 GO:0000287 ... A1E9J1 34879391
    32 7ewk:A (3.88) BS31 CLA 1.97.1.12 GO:0000287 ... A1E9J1 34879391
    33 7ewk:A (3.88) BS32 CLA 1.97.1.12 GO:0000287 ... A1E9J1 34879391
    34 7ewk:A (3.88) BS33 CLA 1.97.1.12 GO:0000287 ... A1E9J1 34879391
    35 7ewk:A (3.88) BS34 CLA 1.97.1.12 GO:0000287 ... A1E9J1 34879391
    36 7ewk:A (3.88) BS35 CLA 1.97.1.12 GO:0000287 ... A1E9J1 34879391
    37 7ewk:A (3.88) BS36 CLA 1.97.1.12 GO:0000287 ... A1E9J1 34879391
    38 7ewk:A (3.88) BS37 CLA 1.97.1.12 GO:0000287 ... A1E9J1 34879391
    39 7ewk:A (3.88) BS38 CLA 1.97.1.12 GO:0000287 ... A1E9J1 34879391
    40 7ewk:A (3.88) BS39 CLA 1.97.1.12 GO:0000287 ... A1E9J1 34879391
    41 7ewk:A (3.88) BS40 CLA 1.97.1.12 GO:0000287 ... A1E9J1 34879391
    42 7ewk:A (3.88) BS41 PQN 1.97.1.12 GO:0000287 ... A1E9J1 34879391
    43 7ewk:A (3.88) BS42 CLA 1.97.1.12 GO:0000287 ... A1E9J1 34879391
    44 7ewk:A (3.88) BS43 CLA 1.97.1.12 GO:0000287 ... A1E9J1 34879391
    45 7ewk:A (3.88) BS44 CLA 1.97.1.12 GO:0000287 ... A1E9J1 34879391
    46 7ewk:A (3.88) BS45 CLA 1.97.1.12 GO:0000287 ... A1E9J1 34879391
    47 7ewk:A (3.88) BS46 SF4 1.97.1.12 GO:0000287 ... A1E9J1 34879391
    48 7ewk:A (3.88) BS47 CLA 1.97.1.12 GO:0000287 ... A1E9J1 34879391
    49 7ewk:A (3.88) BS48 CLA 1.97.1.12 GO:0000287 ... A1E9J1 34879391
    50 7ewk:A (3.88) BS49 CLA 1.97.1.12 GO:0000287 ... A1E9J1 34879391
    51 7ewk:B (3.88) BS01 CLA 1.97.1.12 GO:0000287 ... A1E9J0 34879391
    52 7ewk:B (3.88) BS02 CLA 1.97.1.12 GO:0000287 ... A1E9J0 34879391
    53 7ewk:F (3.88) BS01 CLA ? GO:0009522 ... P13192 34879391
    54 7ewk:J (3.88) BS01 CLA ? GO:0009507 ... A1E9L0 34879391
    55 7ewk:K (3.88) BS01 CLA ? GO:0009522 ... P36886 34879391
    56 7ewk:K (3.88) BS02 CLA ? GO:0009522 ... P36886 34879391
    57 7ewk:L (3.88) BS01 CLA ? GO:0009522 ... P23993 34879391
    58 7ewk:L (3.88) BS02 CLA ? GO:0009522 ... P23993 34879391
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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