Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 61 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6ijo:3 (3.3) BS01 CLA N/A GO:0009765 ... N/A 30850819
    2 6ijo:3 (3.3) BS02 CLA N/A GO:0009765 ... N/A 30850819
    3 6ijo:A (3.3) BS01 CLA 1.97.1.12 GO:0000287 ... P12154 30850819
    4 6ijo:A (3.3) BS02 CLA 1.97.1.12 GO:0000287 ... P12154 30850819
    5 6ijo:A (3.3) BS03 CLA 1.97.1.12 GO:0000287 ... P12154 30850819
    6 6ijo:A (3.3) BS04 CLA 1.97.1.12 GO:0000287 ... P12154 30850819
    7 6ijo:A (3.3) BS05 CLA 1.97.1.12 GO:0000287 ... P12154 30850819
    8 6ijo:A (3.3) BS06 CLA 1.97.1.12 GO:0000287 ... P12154 30850819
    9 6ijo:A (3.3) BS07 CLA 1.97.1.12 GO:0000287 ... P12154 30850819
    10 6ijo:A (3.3) BS08 CLA 1.97.1.12 GO:0000287 ... P12154 30850819
    11 6ijo:A (3.3) BS09 CLA 1.97.1.12 GO:0000287 ... P12154 30850819
    12 6ijo:A (3.3) BS10 CLA 1.97.1.12 GO:0000287 ... P12154 30850819
    13 6ijo:A (3.3) BS11 CLA 1.97.1.12 GO:0000287 ... P12154 30850819
    14 6ijo:A (3.3) BS12 CLA 1.97.1.12 GO:0000287 ... P12154 30850819
    15 6ijo:A (3.3) BS13 CLA 1.97.1.12 GO:0000287 ... P12154 30850819
    16 6ijo:A (3.3) BS14 CLA 1.97.1.12 GO:0000287 ... P12154 30850819
    17 6ijo:A (3.3) BS15 CLA 1.97.1.12 GO:0000287 ... P12154 30850819
    18 6ijo:A (3.3) BS16 CLA 1.97.1.12 GO:0000287 ... P12154 30850819
    19 6ijo:A (3.3) BS17 CLA 1.97.1.12 GO:0000287 ... P12154 30850819
    20 6ijo:A (3.3) BS18 CLA 1.97.1.12 GO:0000287 ... P12154 30850819
    21 6ijo:A (3.3) BS19 CLA 1.97.1.12 GO:0000287 ... P12154 30850819
    22 6ijo:A (3.3) BS20 CLA 1.97.1.12 GO:0000287 ... P12154 30850819
    23 6ijo:A (3.3) BS21 CLA 1.97.1.12 GO:0000287 ... P12154 30850819
    24 6ijo:A (3.3) BS22 CLA 1.97.1.12 GO:0000287 ... P12154 30850819
    25 6ijo:A (3.3) BS23 CLA 1.97.1.12 GO:0000287 ... P12154 30850819
    26 6ijo:A (3.3) BS24 CLA 1.97.1.12 GO:0000287 ... P12154 30850819
    27 6ijo:A (3.3) BS25 CLA 1.97.1.12 GO:0000287 ... P12154 30850819
    28 6ijo:A (3.3) BS26 CLA 1.97.1.12 GO:0000287 ... P12154 30850819
    29 6ijo:A (3.3) BS27 CLA 1.97.1.12 GO:0000287 ... P12154 30850819
    30 6ijo:A (3.3) BS28 CLA 1.97.1.12 GO:0000287 ... P12154 30850819
    31 6ijo:A (3.3) BS29 CLA 1.97.1.12 GO:0000287 ... P12154 30850819
    32 6ijo:A (3.3) BS30 CLA 1.97.1.12 GO:0000287 ... P12154 30850819
    33 6ijo:A (3.3) BS31 CLA 1.97.1.12 GO:0000287 ... P12154 30850819
    34 6ijo:A (3.3) BS32 CLA 1.97.1.12 GO:0000287 ... P12154 30850819
    35 6ijo:A (3.3) BS33 CLA 1.97.1.12 GO:0000287 ... P12154 30850819
    36 6ijo:A (3.3) BS34 CLA 1.97.1.12 GO:0000287 ... P12154 30850819
    37 6ijo:A (3.3) BS35 CLA 1.97.1.12 GO:0000287 ... P12154 30850819
    38 6ijo:A (3.3) BS36 CLA 1.97.1.12 GO:0000287 ... P12154 30850819
    39 6ijo:A (3.3) BS37 CLA 1.97.1.12 GO:0000287 ... P12154 30850819
    40 6ijo:A (3.3) BS38 CLA 1.97.1.12 GO:0000287 ... P12154 30850819
    41 6ijo:A (3.3) BS39 CLA 1.97.1.12 GO:0000287 ... P12154 30850819
    42 6ijo:A (3.3) BS40 CLA 1.97.1.12 GO:0000287 ... P12154 30850819
    43 6ijo:A (3.3) BS41 CLA 1.97.1.12 GO:0000287 ... P12154 30850819
    44 6ijo:A (3.3) BS42 CLA 1.97.1.12 GO:0000287 ... P12154 30850819
    45 6ijo:A (3.3) BS43 PQN 1.97.1.12 GO:0000287 ... P12154 30850819
    46 6ijo:A (3.3) BS44 CLA 1.97.1.12 GO:0000287 ... P12154 30850819
    47 6ijo:A (3.3) BS45 SF4 1.97.1.12 GO:0000287 ... P12154 30850819
    48 6ijo:A (3.3) BS46 CLA 1.97.1.12 GO:0000287 ... P12154 30850819
    49 6ijo:A (3.3) BS47 CLA 1.97.1.12 GO:0000287 ... P12154 30850819
    50 6ijo:A (3.3) BS48 CLA 1.97.1.12 GO:0000287 ... P12154 30850819
    51 6ijo:B (3.3) BS01 CLA 1.97.1.12 GO:0000287 ... P09144 30850819
    52 6ijo:B (3.3) BS02 CLA 1.97.1.12 GO:0000287 ... P09144 30850819
    53 6ijo:B (3.3) BS03 CLA 1.97.1.12 GO:0000287 ... P09144 30850819
    54 6ijo:B (3.3) BS04 CLA 1.97.1.12 GO:0000287 ... P09144 30850819
    55 6ijo:B (3.3) BS05 CLA 1.97.1.12 GO:0000287 ... P09144 30850819
    56 6ijo:B (3.3) BS06 SF4 1.97.1.12 GO:0000287 ... P09144 30850819
    57 6ijo:B (3.3) BS07 CLA 1.97.1.12 GO:0000287 ... P09144 30850819
    58 6ijo:J (3.3) BS01 CLA ? GO:0009507 ... P59777 30850819
    59 6ijo:K (3.3) BS01 CLA ? GO:0009507 ... P14225 30850819
    60 6ijo:K (3.3) BS02 CLA ? GO:0009507 ... P14225 30850819
    61 6ijo:L (3.3) BS01 CLA ? GO:0009522 ... A8IL32 30850819
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218