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BioLiP
Download all results in tab-seperated text for 65 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5zgh:A (3.82) BS01 CL0 1.97.1.12 GO:0000287 ... Q85FY7 29632169
    2 5zgh:A (3.82) BS02 CLA 1.97.1.12 GO:0000287 ... Q85FY7 29632169
    3 5zgh:A (3.82) BS03 CLA 1.97.1.12 GO:0000287 ... Q85FY7 29632169
    4 5zgh:A (3.82) BS04 CLA 1.97.1.12 GO:0000287 ... Q85FY7 29632169
    5 5zgh:A (3.82) BS05 CLA 1.97.1.12 GO:0000287 ... Q85FY7 29632169
    6 5zgh:A (3.82) BS06 CLA 1.97.1.12 GO:0000287 ... Q85FY7 29632169
    7 5zgh:A (3.82) BS07 CLA 1.97.1.12 GO:0000287 ... Q85FY7 29632169
    8 5zgh:A (3.82) BS08 CLA 1.97.1.12 GO:0000287 ... Q85FY7 29632169
    9 5zgh:A (3.82) BS09 CLA 1.97.1.12 GO:0000287 ... Q85FY7 29632169
    10 5zgh:A (3.82) BS10 CLA 1.97.1.12 GO:0000287 ... Q85FY7 29632169
    11 5zgh:A (3.82) BS11 CLA 1.97.1.12 GO:0000287 ... Q85FY7 29632169
    12 5zgh:A (3.82) BS12 CLA 1.97.1.12 GO:0000287 ... Q85FY7 29632169
    13 5zgh:A (3.82) BS13 CLA 1.97.1.12 GO:0000287 ... Q85FY7 29632169
    14 5zgh:A (3.82) BS14 CLA 1.97.1.12 GO:0000287 ... Q85FY7 29632169
    15 5zgh:A (3.82) BS15 CLA 1.97.1.12 GO:0000287 ... Q85FY7 29632169
    16 5zgh:A (3.82) BS16 CLA 1.97.1.12 GO:0000287 ... Q85FY7 29632169
    17 5zgh:A (3.82) BS17 CLA 1.97.1.12 GO:0000287 ... Q85FY7 29632169
    18 5zgh:A (3.82) BS18 CLA 1.97.1.12 GO:0000287 ... Q85FY7 29632169
    19 5zgh:A (3.82) BS19 CLA 1.97.1.12 GO:0000287 ... Q85FY7 29632169
    20 5zgh:A (3.82) BS20 CLA 1.97.1.12 GO:0000287 ... Q85FY7 29632169
    21 5zgh:A (3.82) BS21 CLA 1.97.1.12 GO:0000287 ... Q85FY7 29632169
    22 5zgh:A (3.82) BS22 CLA 1.97.1.12 GO:0000287 ... Q85FY7 29632169
    23 5zgh:A (3.82) BS23 CLA 1.97.1.12 GO:0000287 ... Q85FY7 29632169
    24 5zgh:A (3.82) BS24 CLA 1.97.1.12 GO:0000287 ... Q85FY7 29632169
    25 5zgh:A (3.82) BS25 CLA 1.97.1.12 GO:0000287 ... Q85FY7 29632169
    26 5zgh:A (3.82) BS26 CLA 1.97.1.12 GO:0000287 ... Q85FY7 29632169
    27 5zgh:A (3.82) BS27 CLA 1.97.1.12 GO:0000287 ... Q85FY7 29632169
    28 5zgh:A (3.82) BS28 CLA 1.97.1.12 GO:0000287 ... Q85FY7 29632169
    29 5zgh:A (3.82) BS29 CLA 1.97.1.12 GO:0000287 ... Q85FY7 29632169
    30 5zgh:A (3.82) BS30 CLA 1.97.1.12 GO:0000287 ... Q85FY7 29632169
    31 5zgh:A (3.82) BS31 CLA 1.97.1.12 GO:0000287 ... Q85FY7 29632169
    32 5zgh:A (3.82) BS32 CLA 1.97.1.12 GO:0000287 ... Q85FY7 29632169
    33 5zgh:A (3.82) BS33 CLA 1.97.1.12 GO:0000287 ... Q85FY7 29632169
    34 5zgh:A (3.82) BS34 CLA 1.97.1.12 GO:0000287 ... Q85FY7 29632169
    35 5zgh:A (3.82) BS35 CLA 1.97.1.12 GO:0000287 ... Q85FY7 29632169
    36 5zgh:A (3.82) BS36 CLA 1.97.1.12 GO:0000287 ... Q85FY7 29632169
    37 5zgh:A (3.82) BS37 CLA 1.97.1.12 GO:0000287 ... Q85FY7 29632169
    38 5zgh:A (3.82) BS38 CLA 1.97.1.12 GO:0000287 ... Q85FY7 29632169
    39 5zgh:A (3.82) BS39 CLA 1.97.1.12 GO:0000287 ... Q85FY7 29632169
    40 5zgh:A (3.82) BS40 PQN 1.97.1.12 GO:0000287 ... Q85FY7 29632169
    41 5zgh:A (3.82) BS41 SF4 1.97.1.12 GO:0000287 ... Q85FY7 29632169
    42 5zgh:A (3.82) BS42 CLA 1.97.1.12 GO:0000287 ... Q85FY7 29632169
    43 5zgh:A (3.82) BS43 CLA 1.97.1.12 GO:0000287 ... Q85FY7 29632169
    44 5zgh:A (3.82) BS44 CLA 1.97.1.12 GO:0000287 ... Q85FY7 29632169
    45 5zgh:A (3.82) BS45 CLA 1.97.1.12 GO:0000287 ... Q85FY7 29632169
    46 5zgh:A (3.82) BS46 CLA 1.97.1.12 GO:0000287 ... Q85FY7 29632169
    47 5zgh:A (3.82) BS47 CLA 1.97.1.12 GO:0000287 ... Q85FY7 29632169
    48 5zgh:A (3.82) BS48 CLA 1.97.1.12 GO:0000287 ... Q85FY7 29632169
    49 5zgh:A (3.82) BS49 CLA 1.97.1.12 GO:0000287 ... Q85FY7 29632169
    50 5zgh:A (3.82) BS50 CLA 1.97.1.12 GO:0000287 ... Q85FY7 29632169
    51 5zgh:A (3.82) BS51 CLA 1.97.1.12 GO:0000287 ... Q85FY7 29632169
    52 5zgh:A (3.82) BS52 CLA 1.97.1.12 GO:0000287 ... Q85FY7 29632169
    53 5zgh:A (3.82) BS53 CLA 1.97.1.12 GO:0000287 ... Q85FY7 29632169
    54 5zgh:B (3.82) BS02 CLA 1.97.1.12 GO:0000287 ... Q85FY6 29632169
    55 5zgh:B (3.82) BS03 CLA 1.97.1.12 GO:0000287 ... Q85FY6 29632169
    56 5zgh:B (3.82) BS04 SF4 1.97.1.12 GO:0000287 ... Q85FY6 29632169
    57 5zgh:B (3.82) BS05 CLA 1.97.1.12 GO:0000287 ... Q85FY6 29632169
    58 5zgh:B (3.82) BS06 CLA 1.97.1.12 GO:0000287 ... Q85FY6 29632169
    59 5zgh:F (3.82) BS01 CLA ? GO:0009522 ... Q85FS9 29632169
    60 5zgh:J (3.82) BS01 CLA ? GO:0009507 ... Q85FS8 29632169
    61 5zgh:J (3.82) BS02 CLA ? GO:0009507 ... Q85FS8 29632169
    62 5zgh:K (3.82) BS01 CLA ? GO:0009507 ... Q85G51 29632169
    63 5zgh:K (3.82) BS02 CLA ? GO:0009507 ... Q85G51 29632169
    64 5zgh:L (3.82) BS01 CLA ? GO:0009507 ... Q85FP8 29632169
    65 5zgh:O (3.82) BS01 CLA ? GO:0016020 ... M1VFJ4 29632169
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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