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BioLiP
Download all results in tab-seperated text for 66 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1jb0:A (2.5) BS01 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    2 1jb0:A (2.5) BS02 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    3 1jb0:A (2.5) BS03 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    4 1jb0:A (2.5) BS04 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    5 1jb0:A (2.5) BS05 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    6 1jb0:A (2.5) BS06 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    7 1jb0:A (2.5) BS07 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    8 1jb0:A (2.5) BS08 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    9 1jb0:A (2.5) BS09 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    10 1jb0:A (2.5) BS10 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    11 1jb0:A (2.5) BS11 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    12 1jb0:A (2.5) BS12 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    13 1jb0:A (2.5) BS13 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    14 1jb0:A (2.5) BS14 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    15 1jb0:A (2.5) BS15 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    16 1jb0:A (2.5) BS16 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    17 1jb0:A (2.5) BS17 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    18 1jb0:A (2.5) BS18 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    19 1jb0:A (2.5) BS19 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    20 1jb0:A (2.5) BS20 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    21 1jb0:A (2.5) BS21 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    22 1jb0:A (2.5) BS22 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    23 1jb0:A (2.5) BS23 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    24 1jb0:A (2.5) BS24 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    25 1jb0:A (2.5) BS25 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    26 1jb0:A (2.5) BS26 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    27 1jb0:A (2.5) BS27 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    28 1jb0:A (2.5) BS28 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    29 1jb0:A (2.5) BS29 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    30 1jb0:A (2.5) BS30 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    31 1jb0:A (2.5) BS31 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    32 1jb0:A (2.5) BS32 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    33 1jb0:A (2.5) BS33 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    34 1jb0:A (2.5) BS34 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    35 1jb0:A (2.5) BS35 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    36 1jb0:A (2.5) BS36 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    37 1jb0:A (2.5) BS37 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    38 1jb0:A (2.5) BS38 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    39 1jb0:A (2.5) BS39 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    40 1jb0:A (2.5) BS40 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    41 1jb0:A (2.5) BS41 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    42 1jb0:A (2.5) BS42 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    43 1jb0:A (2.5) BS43 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    44 1jb0:A (2.5) BS44 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    45 1jb0:A (2.5) BS45 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    46 1jb0:A (2.5) BS46 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    47 1jb0:A (2.5) BS47 PQN 1.97.1.12 GO:0000287 ... P0A405 11418848
    48 1jb0:A (2.5) BS48 SF4 1.97.1.12 GO:0000287 ... P0A405 11418848
    49 1jb0:A (2.5) BS49 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    50 1jb0:A (2.5) BS50 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    51 1jb0:A (2.5) BS51 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    52 1jb0:A (2.5) BS52 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    53 1jb0:B (2.5) BS02 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    54 1jb0:B (2.5) BS03 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    55 1jb0:B (2.5) BS04 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    56 1jb0:B (2.5) BS05 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    57 1jb0:B (2.5) BS06 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    58 1jb0:B (2.5) BS07 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    59 1jb0:B (2.5) BS08 SF4 1.97.1.12 GO:0000287 ... P0A407 11418848
    60 1jb0:F (2.5) BS01 CLA ? GO:0009522 ... P0A401 11418848
    61 1jb0:J (2.5) BS01 CLA ? GO:0009522 ... P0A429 11418848
    62 1jb0:J (2.5) BS02 CLA ? GO:0009522 ... P0A429 11418848
    63 1jb0:J (2.5) BS03 CLA ? GO:0009522 ... P0A429 11418848
    64 1jb0:K (2.5) BS01 CLA ? GO:0009522 ... P0A425 11418848
    65 1jb0:L (2.5) BS01 CLA ? GO:0009522 ... Q8DGB4 11418848
    66 1jb0:L (2.5) BS02 CLA ? GO:0009522 ... Q8DGB4 11418848
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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