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BioLiP
Download all results in tab-seperated text for 71 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7bgi:3 (2.54) BS01 CLA ? GO:0009765 ... Q75VY9 N/A
    2 7bgi:3 (2.54) BS02 CLA ? GO:0009765 ... Q75VY9 N/A
    3 7bgi:3 (2.54) BS03 CLA ? GO:0009765 ... Q75VY9 N/A
    4 7bgi:3 (2.54) BS04 CLA ? GO:0009765 ... Q75VY9 N/A
    5 7bgi:A (2.54) BS01 CL0 1.97.1.12 GO:0000287 ... P12154 N/A
    6 7bgi:A (2.54) BS02 CLA 1.97.1.12 GO:0000287 ... P12154 N/A
    7 7bgi:A (2.54) BS03 CLA 1.97.1.12 GO:0000287 ... P12154 N/A
    8 7bgi:A (2.54) BS04 CLA 1.97.1.12 GO:0000287 ... P12154 N/A
    9 7bgi:A (2.54) BS05 CLA 1.97.1.12 GO:0000287 ... P12154 N/A
    10 7bgi:A (2.54) BS06 CLA 1.97.1.12 GO:0000287 ... P12154 N/A
    11 7bgi:A (2.54) BS07 CLA 1.97.1.12 GO:0000287 ... P12154 N/A
    12 7bgi:A (2.54) BS08 CLA 1.97.1.12 GO:0000287 ... P12154 N/A
    13 7bgi:A (2.54) BS09 CLA 1.97.1.12 GO:0000287 ... P12154 N/A
    14 7bgi:A (2.54) BS10 CLA 1.97.1.12 GO:0000287 ... P12154 N/A
    15 7bgi:A (2.54) BS11 CLA 1.97.1.12 GO:0000287 ... P12154 N/A
    16 7bgi:A (2.54) BS12 CLA 1.97.1.12 GO:0000287 ... P12154 N/A
    17 7bgi:A (2.54) BS13 CLA 1.97.1.12 GO:0000287 ... P12154 N/A
    18 7bgi:A (2.54) BS14 CLA 1.97.1.12 GO:0000287 ... P12154 N/A
    19 7bgi:A (2.54) BS15 CLA 1.97.1.12 GO:0000287 ... P12154 N/A
    20 7bgi:A (2.54) BS16 CLA 1.97.1.12 GO:0000287 ... P12154 N/A
    21 7bgi:A (2.54) BS17 CLA 1.97.1.12 GO:0000287 ... P12154 N/A
    22 7bgi:A (2.54) BS18 CLA 1.97.1.12 GO:0000287 ... P12154 N/A
    23 7bgi:A (2.54) BS19 CLA 1.97.1.12 GO:0000287 ... P12154 N/A
    24 7bgi:A (2.54) BS20 CLA 1.97.1.12 GO:0000287 ... P12154 N/A
    25 7bgi:A (2.54) BS21 CLA 1.97.1.12 GO:0000287 ... P12154 N/A
    26 7bgi:A (2.54) BS22 CLA 1.97.1.12 GO:0000287 ... P12154 N/A
    27 7bgi:A (2.54) BS23 CLA 1.97.1.12 GO:0000287 ... P12154 N/A
    28 7bgi:A (2.54) BS24 CLA 1.97.1.12 GO:0000287 ... P12154 N/A
    29 7bgi:A (2.54) BS25 CLA 1.97.1.12 GO:0000287 ... P12154 N/A
    30 7bgi:A (2.54) BS26 CLA 1.97.1.12 GO:0000287 ... P12154 N/A
    31 7bgi:A (2.54) BS27 CLA 1.97.1.12 GO:0000287 ... P12154 N/A
    32 7bgi:A (2.54) BS28 CLA 1.97.1.12 GO:0000287 ... P12154 N/A
    33 7bgi:A (2.54) BS29 CLA 1.97.1.12 GO:0000287 ... P12154 N/A
    34 7bgi:A (2.54) BS30 CLA 1.97.1.12 GO:0000287 ... P12154 N/A
    35 7bgi:A (2.54) BS31 CLA 1.97.1.12 GO:0000287 ... P12154 N/A
    36 7bgi:A (2.54) BS32 CLA 1.97.1.12 GO:0000287 ... P12154 N/A
    37 7bgi:A (2.54) BS33 CLA 1.97.1.12 GO:0000287 ... P12154 N/A
    38 7bgi:A (2.54) BS34 CLA 1.97.1.12 GO:0000287 ... P12154 N/A
    39 7bgi:A (2.54) BS35 CLA 1.97.1.12 GO:0000287 ... P12154 N/A
    40 7bgi:A (2.54) BS36 CLA 1.97.1.12 GO:0000287 ... P12154 N/A
    41 7bgi:A (2.54) BS37 CLA 1.97.1.12 GO:0000287 ... P12154 N/A
    42 7bgi:A (2.54) BS38 CLA 1.97.1.12 GO:0000287 ... P12154 N/A
    43 7bgi:A (2.54) BS39 CLA 1.97.1.12 GO:0000287 ... P12154 N/A
    44 7bgi:A (2.54) BS40 CLA 1.97.1.12 GO:0000287 ... P12154 N/A
    45 7bgi:A (2.54) BS41 CLA 1.97.1.12 GO:0000287 ... P12154 N/A
    46 7bgi:A (2.54) BS42 PQN 1.97.1.12 GO:0000287 ... P12154 N/A
    47 7bgi:A (2.54) BS43 SF4 1.97.1.12 GO:0000287 ... P12154 N/A
    48 7bgi:A (2.54) BS44 CLA 1.97.1.12 GO:0000287 ... P12154 N/A
    49 7bgi:A (2.54) BS45 CLA 1.97.1.12 GO:0000287 ... P12154 N/A
    50 7bgi:A (2.54) BS46 CLA 1.97.1.12 GO:0000287 ... P12154 N/A
    51 7bgi:A (2.54) BS47 CLA 1.97.1.12 GO:0000287 ... P12154 N/A
    52 7bgi:A (2.54) BS48 CLA 1.97.1.12 GO:0000287 ... P12154 N/A
    53 7bgi:A (2.54) BS49 CLA 1.97.1.12 GO:0000287 ... P12154 N/A
    54 7bgi:A (2.54) BS50 CLA 1.97.1.12 GO:0000287 ... P12154 N/A
    55 7bgi:A (2.54) BS51 CLA 1.97.1.12 GO:0000287 ... P12154 N/A
    56 7bgi:A (2.54) BS52 C7Z 1.97.1.12 GO:0000287 ... P12154 N/A
    57 7bgi:B (2.54) BS01 CL0 1.97.1.12 GO:0000287 ... P09144 N/A
    58 7bgi:B (2.54) BS02 CLA 1.97.1.12 GO:0000287 ... P09144 N/A
    59 7bgi:B (2.54) BS03 CLA 1.97.1.12 GO:0000287 ... P09144 N/A
    60 7bgi:B (2.54) BS04 CLA 1.97.1.12 GO:0000287 ... P09144 N/A
    61 7bgi:B (2.54) BS05 SF4 1.97.1.12 GO:0000287 ... P09144 N/A
    62 7bgi:B (2.54) BS06 CLA 1.97.1.12 GO:0000287 ... P09144 N/A
    63 7bgi:F (2.54) BS01 CLA ? GO:0009522 ... P12356 N/A
    64 7bgi:F (2.54) BS02 CLA ? GO:0009522 ... P12356 N/A
    65 7bgi:J (2.54) BS01 CLA ? GO:0009507 ... P59777 N/A
    66 7bgi:J (2.54) BS02 CLA ? GO:0009507 ... P59777 N/A
    67 7bgi:K (2.54) BS01 CLA ? GO:0009522 ... P14225 N/A
    68 7bgi:K (2.54) BS02 CLA ? GO:0009522 ... P14225 N/A
    69 7bgi:K (2.54) BS03 CLA ? GO:0009522 ... P14225 N/A
    70 7bgi:L (2.54) BS01 CLA ? GO:0009522 ... A8IL32 N/A
    71 7bgi:L (2.54) BS02 CLA ? GO:0009522 ... A8IL32 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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