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BioLiP
Download all results in tab-seperated text for 62 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6tra:A (2.85) BS01 CL0 1.97.1.12 GO:0000287 ... P0A405 N/A
    2 6tra:A (2.85) BS02 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    3 6tra:A (2.85) BS03 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    4 6tra:A (2.85) BS04 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    5 6tra:A (2.85) BS05 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    6 6tra:A (2.85) BS06 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    7 6tra:A (2.85) BS07 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    8 6tra:A (2.85) BS08 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    9 6tra:A (2.85) BS09 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    10 6tra:A (2.85) BS10 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    11 6tra:A (2.85) BS11 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    12 6tra:A (2.85) BS12 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    13 6tra:A (2.85) BS13 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    14 6tra:A (2.85) BS14 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    15 6tra:A (2.85) BS15 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    16 6tra:A (2.85) BS16 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    17 6tra:A (2.85) BS17 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    18 6tra:A (2.85) BS18 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    19 6tra:A (2.85) BS19 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    20 6tra:A (2.85) BS20 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    21 6tra:A (2.85) BS21 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    22 6tra:A (2.85) BS22 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    23 6tra:A (2.85) BS23 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    24 6tra:A (2.85) BS24 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    25 6tra:A (2.85) BS25 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    26 6tra:A (2.85) BS26 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    27 6tra:A (2.85) BS27 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    28 6tra:A (2.85) BS28 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    29 6tra:A (2.85) BS29 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    30 6tra:A (2.85) BS30 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    31 6tra:A (2.85) BS31 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    32 6tra:A (2.85) BS32 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    33 6tra:A (2.85) BS33 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    34 6tra:A (2.85) BS34 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    35 6tra:A (2.85) BS35 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    36 6tra:A (2.85) BS36 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    37 6tra:A (2.85) BS37 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    38 6tra:A (2.85) BS38 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    39 6tra:A (2.85) BS39 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    40 6tra:A (2.85) BS40 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    41 6tra:A (2.85) BS41 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    42 6tra:A (2.85) BS42 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    43 6tra:A (2.85) BS43 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    44 6tra:A (2.85) BS44 PQN 1.97.1.12 GO:0000287 ... P0A405 N/A
    45 6tra:A (2.85) BS45 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    46 6tra:A (2.85) BS46 SF4 1.97.1.12 GO:0000287 ... P0A405 N/A
    47 6tra:A (2.85) BS47 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    48 6tra:A (2.85) BS48 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    49 6tra:A (2.85) BS49 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    50 6tra:A (2.85) BS50 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    51 6tra:B (2.85) BS02 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    52 6tra:B (2.85) BS03 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    53 6tra:B (2.85) BS04 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    54 6tra:B (2.85) BS05 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    55 6tra:B (2.85) BS06 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    56 6tra:F (2.85) BS02 CLA ? GO:0009522 ... P0A401 N/A
    57 6tra:J (2.85) BS01 CLA ? GO:0009522 ... P0A429 N/A
    58 6tra:K (2.85) BS01 CLA ? GO:0009522 ... P0A425 N/A
    59 6tra:K (2.85) BS02 CLA ? GO:0009522 ... P0A425 N/A
    60 6tra:L (2.85) BS01 CLA ? GO:0009522 ... Q8DGB4 N/A
    61 6tra:L (2.85) BS02 CLA ? GO:0009522 ... Q8DGB4 N/A
    62 6tra:L (2.85) BS03 CLA ? GO:0009522 ... Q8DGB4 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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