Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
Download all results in tab-seperated text for 74 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
  • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8wmv:A (2.94) BS01 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    2 8wmv:A (2.94) BS02 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    3 8wmv:A (2.94) BS03 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    4 8wmv:A (2.94) BS04 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    5 8wmv:A (2.94) BS05 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    6 8wmv:A (2.94) BS06 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    7 8wmv:A (2.94) BS07 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    8 8wmv:A (2.94) BS08 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    9 8wmv:A (2.94) BS09 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    10 8wmv:A (2.94) BS10 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    11 8wmv:A (2.94) BS11 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    12 8wmv:A (2.94) BS12 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    13 8wmv:A (2.94) BS13 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    14 8wmv:A (2.94) BS14 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    15 8wmv:A (2.94) BS15 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    16 8wmv:A (2.94) BS16 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    17 8wmv:A (2.94) BS17 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    18 8wmv:A (2.94) BS18 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    19 8wmv:A (2.94) BS19 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    20 8wmv:A (2.94) BS20 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    21 8wmv:A (2.94) BS21 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    22 8wmv:A (2.94) BS22 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    23 8wmv:A (2.94) BS23 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    24 8wmv:A (2.94) BS24 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    25 8wmv:A (2.94) BS25 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    26 8wmv:A (2.94) BS26 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    27 8wmv:A (2.94) BS27 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    28 8wmv:A (2.94) BS28 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    29 8wmv:A (2.94) BS29 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    30 8wmv:A (2.94) BS30 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    31 8wmv:A (2.94) BS31 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    32 8wmv:A (2.94) BS32 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    33 8wmv:A (2.94) BS33 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    34 8wmv:A (2.94) BS34 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    35 8wmv:A (2.94) BS35 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    36 8wmv:A (2.94) BS36 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    37 8wmv:A (2.94) BS37 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    38 8wmv:A (2.94) BS38 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    39 8wmv:A (2.94) BS39 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    40 8wmv:A (2.94) BS40 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    41 8wmv:A (2.94) BS41 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    42 8wmv:A (2.94) BS42 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    43 8wmv:A (2.94) BS43 PQN 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    44 8wmv:A (2.94) BS44 WVN 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    45 8wmv:A (2.94) BS45 WVN 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    46 8wmv:A (2.94) BS46 WVN 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    47 8wmv:A (2.94) BS47 WVN 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    48 8wmv:A (2.94) BS48 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    49 8wmv:A (2.94) BS49 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    50 8wmv:A (2.94) BS50 SF4 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    51 8wmv:A (2.94) BS51 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    52 8wmv:A (2.94) BS52 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    53 8wmv:A (2.94) BS53 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    54 8wmv:A (2.94) BS54 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    55 8wmv:A (2.94) BS55 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    56 8wmv:A (2.94) BS56 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    57 8wmv:A (2.94) BS57 II0 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    58 8wmv:A (2.94) BS58 WVN 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    59 8wmv:B (2.94) BS01 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    60 8wmv:B (2.94) BS02 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    61 8wmv:B (2.94) BS03 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    62 8wmv:B (2.94) BS04 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    63 8wmv:B (2.94) BS05 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    64 8wmv:B (2.94) BS06 SF4 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    65 8wmv:B (2.94) BS07 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    66 8wmv:F (2.94) BS01 CLA ? N/A A6MVU7 38734819
    67 8wmv:J (2.94) BS01 CLA ? GO:0009507 ... A6MVU6 38734819
    68 8wmv:K (2.94) BS01 CLA ? GO:0009507 ... A6MVS9 38734819
    69 8wmv:K (2.94) BS02 WVN ? GO:0009507 ... A6MVS9 38734819
    70 8wmv:L (2.94) BS01 CLA ? GO:0009507 ... A6MVV8 38734819
    71 8wmv:L (2.94) BS02 CLA ? GO:0009507 ... A6MVV8 38734819
    72 8wmv:L (2.94) BS03 CLA ? GO:0009507 ... A6MVV8 38734819
    73 8wmv:O (2.94) BS01 CLA N/A N/A N/A 38734819
    74 8wmv:O (2.94) BS02 CLA N/A N/A N/A 38734819

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218