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BioLiP
Download all results in tab-seperated text for 15 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7sa3:A (2.25) BS01 peptide ? GO:0009055 ... B4WKH9 34801554
    2 7sa3:A (2.25) BS02 peptide ? GO:0009055 ... B4WKH9 34801554
    3 7sa3:A (2.25) BS03 CA ? GO:0009055 ... B4WKH9 34801554
    4 7sa3:A (2.25) BS04 CLA ? GO:0009055 ... B4WKH9 34801554
    5 7sa3:A (2.25) BS05 CL7 ? GO:0009055 ... B4WKH9 34801554
    6 7sa3:A (2.25) BS06 CLA ? GO:0009055 ... B4WKH9 34801554
    7 7sa3:A (2.25) BS07 PHO ? GO:0009055 ... B4WKH9 34801554
    8 7sa3:A (2.25) BS08 CLA ? GO:0009055 ... B4WKH9 34801554
    9 7sa3:A (2.25) BS09 CLA ? GO:0009055 ... B4WKH9 34801554
    10 7sa3:A (2.25) BS10 FE2 ? GO:0009055 ... B4WKH9 34801554
    11 7sa3:A (2.25) BS11 PHO ? GO:0009055 ... B4WKH9 34801554
    12 7sa3:C (2.25) BS02 CA ? GO:0005737 ... B4WKI2 34801554
    13 7sa3:D (2.25) BS01 CL7 1.10.3.9 GO:0005506 ... B4WKI3 34801554
    14 7sa3:D (2.25) BS02 CLA 1.10.3.9 GO:0005506 ... B4WKI3 34801554
    15 7sa3:D (2.25) BS03 PHO 1.10.3.9 GO:0005506 ... B4WKI3 34801554
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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