BioLiP

Download all results in tab-seperated text for 9 receptor-ligand interactions, whose format is explained at readme.txt.

Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.

Click Site # to view the binding site structure. Hover over Site # to view the binding residues.

The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.

Hover over EC number to view the full name of enzymatic activity.

Hover over GO terms to view all GO terms.

Hover over UniProt to view the protein name.

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aauccaugaccaaagaaucgucacaaaucgaagcuuacaaaauggaguaa
aauuuuguuuacucaguaauaugcuuuggguugaaagucucccaccaauu
cguaugcggaaaacguaaugagauuuaaaaaaauuguuuaaaucaacuca
uuaaggaggaugcccuuggguauucugcuucuugaccugguaccucuauu
gcaggguacugguguuuucuucgguacuggauuccguuuguauggaaucu
aaaccauaguuaugacgauugcucuuucccgugcuggaucgaguaaccca
auggagcuuacuauucuugguccauggauu
<<<<<<<<<<<<<<.<<<<<<<......<<<<<<..........<<<<<<
<......>>>>>>>........>>>>>>........[.((((.<<<....
.....<<<.....>>><<<<<..........................>>>
>><<<.<<<<<<<<....>>>>>>>>.>>>......<<<<<<<<<.....
...>>>>>>>>>..........>>>...<<<<<<<<......>>>>>>>>
.............>>>>>>><<<<..<<<......>>>..>>>>......
..)))).]...>....>>>>>>.>>>>>>>
aauccaugaccaaagaaucgucacaaaucgaagcuuacaaaauggaguaa
aauuuuguuuacucaguaauaugcuuuggguugaaagucucccaccaauu
cguaugcggaaaacguaaugagauuuaaaaaaauuguuuaaaucaacuca
uuaaggaggaugcccuuggguauucugcuucuugaccugguaccucuauu
gcaggguacugguguuuucuucgguacuggauuccguuuguauggaaucu
aaaccauaguuaugacgauugcucuuucccgugcuggaucgaguaaccca
auggagcuuacuauucuugguccauggauu
<<<<<<<<<<<<<<.<<<<<<<......<<<<<<..........<<<<<<
<......>>>>>>>........>>>>>>........[.((((.<<<....
.....<<<.....>>><<<<<..........................>>>
>><<<.<<<<<<<<....>>>>>>>>.>>>......<<<<<<<<<.....
...>>>>>>>>>..........>>>...<<<<<<<<......>>>>>>>>
.............>>>>>>><<<<..<<<......>>>..>>>>......
..)))).]...>....>>>>>>.>>>>>>>
aauccaugaccaaagaaucgucacaaaucgaagcuuacaaaauggaguaa
aauuuuguuuacucaguaauaugcuuuggguugaaagucucccaccaauu
cguaugcggaaaacguaaugagauuuaaaaaaauuguuuaaaucaacuca
uuaaggaggaugcccuuggguauucugcuucuugaccugguaccucuauu
gcaggguacugguguuuucuucgguacuggauuccguuuguauggaaucu
aaaccauaguuaugacgauugcucuuucccgugcuggaucgaguaaccca
auggagcuuacuauucuugguccauggauu
<<<<<<<<<<<<<<.<<<<<<<......<<<<<<..........<<<<<<
<......>>>>>>>........>>>>>>........[.((((.<<<....
.....<<<.....>>><<<<<..........................>>>
>><<<.<<<<<<<<....>>>>>>>>.>>>......<<<<<<<<<.....
...>>>>>>>>>..........>>>...<<<<<<<<......>>>>>>>>
.............>>>>>>><<<<..<<<......>>>..>>>>......
..)))).]...>....>>>>>>.>>>>>>>
aauccaugaccaaagaaucgucacaaaucgaagcuuacaaaauggaguaa
aauuuuguuuacucaguaauaugcuuuggguugaaagucucccaccaauu
cguaugcggaaaacguaaugagauuuaaaaaaauuguuuaaaucaacuca
uuaaggaggaugcccuuggguauucugcuucuugaccugguaccucuauu
gcaggguacugguguuuucuucgguacuggauuccguuuguauggaaucu
aaaccauaguuaugacgauugcucuuucccgugcuggaucgaguaaccca
auggagcuuacuauucuugguccauggauu
<<<<<<<<<<<<<<.<<<<<<<......<<<<<<..........<<<<<<
<......>>>>>>>........>>>>>>........[.((((.<<<....
.....<<<.....>>><<<<<..........................>>>
>><<<.<<<<<<<<....>>>>>>>>.>>>......<<<<<<<<<.....
...>>>>>>>>>..........>>>...<<<<<<<<......>>>>>>>>
.............>>>>>>><<<<..<<<......>>>..>>>>......
..)))).]...>....>>>>>>.>>>>>>>
aauccaugaccaaagaaucgucacaaaucgaagcuuacaaaauggaguaa
aauuuuguuuacucaguaauaugcuuuggguugaaagucucccaccaauu
cguaugcggaaaacguaaugagauuuaaaaaaauuguuuaaaucaacuca
uuaaggaggaugcccuuggguauucugcuucuugaccugguaccucuauu
gcaggguacugguguuuucuucgguacuggauuccguuuguauggaaucu
aaaccauaguuaugacgauugcucuuucccgugcuggaucgaguaaccca
auggagcuuacuauucuugguccauggauu
<<<<<<<<<<<<<<.<<<<<<<......<<<<<<..........<<<<<<
<......>>>>>>>........>>>>>>........[.((((.<<<....
.....<<<.....>>><<<<<..........................>>>
>><<<.<<<<<<<<....>>>>>>>>.>>>......<<<<<<<<<.....
...>>>>>>>>>..........>>>...<<<<<<<<......>>>>>>>>
.............>>>>>>><<<<..<<<......>>>..>>>>......
..)))).]...>....>>>>>>.>>>>>>>
aauccaugaccaaagaaucgucacaaaucgaagcuuacaaaauggaguaa
aauuuuguuuacucaguaauaugcuuuggguugaaagucucccaccaauu
cguaugcggaaaacguaaugagauuuaaaaaaauuguuuaaaucaacuca
uuaaggaggaugcccuuggguauucugcuucuugaccugguaccucuauu
gcaggguacugguguuuucuucgguacuggauuccguuuguauggaaucu
aaaccauaguuaugacgauugcucuuucccgugcuggaucgaguaaccca
auggagcuuacuauucuugguccauggauu
<<<<<<<<<<<<<<.<<<<<<<......<<<<<<..........<<<<<<
<......>>>>>>>........>>>>>>........[.((((.<<<....
.....<<<.....>>><<<<<..........................>>>
>><<<.<<<<<<<<....>>>>>>>>.>>>......<<<<<<<<<.....
...>>>>>>>>>..........>>>...<<<<<<<<......>>>>>>>>
.............>>>>>>><<<<..<<<......>>>..>>>>......
..)))).]...>....>>>>>>.>>>>>>>
aauccaugaccaaagaaucgucacaaaucgaagcuuacaaaauggaguaa
aauuuuguuuacucaguaauaugcuuuggguugaaagucucccaccaauu
cguaugcggaaaacguaaugagauuuaaaaaaauuguuuaaaucaacuca
uuaaggaggaugcccuuggguauucugcuucuugaccugguaccucuauu
gcaggguacugguguuuucuucgguacuggauuccguuuguauggaaucu
aaaccauaguuaugacgauugcucuuucccgugcuggaucgaguaaccca
auggagcuuacuauucuugguccauggauu
<<<<<<<<<<<<<<.<<<<<<<......<<<<<<..........<<<<<<
<......>>>>>>>........>>>>>>........[.((((.<<<....
.....<<<.....>>><<<<<..........................>>>
>><<<.<<<<<<<<....>>>>>>>>.>>>......<<<<<<<<<.....
...>>>>>>>>>..........>>>...<<<<<<<<......>>>>>>>>
.............>>>>>>><<<<..<<<......>>>..>>>>......
..)))).]...>....>>>>>>.>>>>>>>
aauccaugaccaaagaaucgucacaaaucgaagcuuacaaaauggaguaa
aauuuuguuuacucaguaauaugcuuuggguugaaagucucccaccaauu
cguaugcggaaaacguaaugagauuuaaaaaaauuguuuaaaucaacuca
uuaaggaggaugcccuuggguauucugcuucuugaccugguaccucuauu
gcaggguacugguguuuucuucgguacuggauuccguuuguauggaaucu
aaaccauaguuaugacgauugcucuuucccgugcuggaucgaguaaccca
auggagcuuacuauucuugguccauggauu
<<<<<<<<<<<<<<.<<<<<<<......<<<<<<..........<<<<<<
<......>>>>>>>........>>>>>>........[.((((.<<<....
.....<<<.....>>><<<<<..........................>>>
>><<<.<<<<<<<<....>>>>>>>>.>>>......<<<<<<<<<.....
...>>>>>>>>>..........>>>...<<<<<<<<......>>>>>>>>
.............>>>>>>><<<<..<<<......>>>..>>>>......
..)))).]...>....>>>>>>.>>>>>>>
aauccaugaccaaagaaucgucacaaaucgaagcuuacaaaauggaguaa
aauuuuguuuacucaguaauaugcuuuggguugaaagucucccaccaauu
cguaugcggaaaacguaaugagauuuaaaaaaauuguuuaaaucaacuca
uuaaggaggaugcccuuggguauucugcuucuugaccugguaccucuauu
gcaggguacugguguuuucuucgguacuggauuccguuuguauggaaucu
aaaccauaguuaugacgauugcucuuucccgugcuggaucgaguaaccca
auggagcuuacuauucuugguccauggauu
<<<<<<<<<<<<<<.<<<<<<<......<<<<<<..........<<<<<<
<......>>>>>>>........>>>>>>........[.((((.<<<....
.....<<<.....>>><<<<<..........................>>>
>><<<.<<<<<<<<....>>>>>>>>.>>>......<<<<<<<<<.....
...>>>>>>>>>..........>>>...<<<<<<<<......>>>>>>>>
.............>>>>>>><<<<..<<<......>>>..>>>>......
..)))).]...>....>>>>>>.>>>>>>>

#	PDB (resolution)	Site #	RNA sequence	EC number	GO terms	UniProt	PubMed
1	7c7a:B (2.8)	BS01	>7c7a:A aauccaugaccaaagaaucgucacaaaucgaagcuuacaaaauggaguaa aauuuuguuuacucaguaauaugcuuuggguugaaagucucccaccaauu cguaugcggaaaacguaaugagauuuaaaaaaauuguuuaaaucaacuca uuaaggaggaugcccuuggguauucugcuucuugaccugguaccucuauu gcaggguacugguguuuucuucgguacuggauuccguuuguauggaaucu aaaccauaguuaugacgauugcucuuucccgugcuggaucgaguaaccca auggagcuuacuauucuugguccauggauu <<<<<<<<<<<<<<.<<<<<<<......<<<<<<..........<<<<<< <......>>>>>>>........>>>>>>........[.((((.<<<.... .....<<<.....>>><<<<<..........................>>> >><<<.<<<<<<<<....>>>>>>>>.>>>......<<<<<<<<<..... ...>>>>>>>>>..........>>>...<<<<<<<<......>>>>>>>> .............>>>>>>><<<<..<<<......>>>..>>>>...... ..)))).]...>....>>>>>>.>>>>>>>	3.1.26.5	GO:0000171 ...	P41812	32586950
2	7c7a:D (2.8)	BS01	>7c7a:A aauccaugaccaaagaaucgucacaaaucgaagcuuacaaaauggaguaa aauuuuguuuacucaguaauaugcuuuggguugaaagucucccaccaauu cguaugcggaaaacguaaugagauuuaaaaaaauuguuuaaaucaacuca uuaaggaggaugcccuuggguauucugcuucuugaccugguaccucuauu gcaggguacugguguuuucuucgguacuggauuccguuuguauggaaucu aaaccauaguuaugacgauugcucuuucccgugcuggaucgaguaaccca auggagcuuacuauucuugguccauggauu <<<<<<<<<<<<<<.<<<<<<<......<<<<<<..........<<<<<< <......>>>>>>>........>>>>>>........[.((((.<<<.... .....<<<.....>>><<<<<..........................>>> >><<<.<<<<<<<<....>>>>>>>>.>>>......<<<<<<<<<..... ...>>>>>>>>>..........>>>...<<<<<<<<......>>>>>>>> .............>>>>>>><<<<..<<<......>>>..>>>>...... ..)))).]...>....>>>>>>.>>>>>>>	?	GO:0000171 ...	P38336	32586950
3	7c7a:E (2.8)	BS01	>7c7a:A aauccaugaccaaagaaucgucacaaaucgaagcuuacaaaauggaguaa aauuuuguuuacucaguaauaugcuuuggguugaaagucucccaccaauu cguaugcggaaaacguaaugagauuuaaaaaaauuguuuaaaucaacuca uuaaggaggaugcccuuggguauucugcuucuugaccugguaccucuauu gcaggguacugguguuuucuucgguacuggauuccguuuguauggaaucu aaaccauaguuaugacgauugcucuuucccgugcuggaucgaguaaccca auggagcuuacuauucuugguccauggauu <<<<<<<<<<<<<<.<<<<<<<......<<<<<<..........<<<<<< <......>>>>>>>........>>>>>>........[.((((.<<<.... .....<<<.....>>><<<<<..........................>>> >><<<.<<<<<<<<....>>>>>>>>.>>>......<<<<<<<<<..... ...>>>>>>>>>..........>>>...<<<<<<<<......>>>>>>>> .............>>>>>>><<<<..<<<......>>>..>>>>...... ..)))).]...>....>>>>>>.>>>>>>>	3.1.26.5	GO:0000171 ...	P28005	32586950
4	7c7a:F (2.8)	BS01	>7c7a:A aauccaugaccaaagaaucgucacaaaucgaagcuuacaaaauggaguaa aauuuuguuuacucaguaauaugcuuuggguugaaagucucccaccaauu cguaugcggaaaacguaaugagauuuaaaaaaauuguuuaaaucaacuca uuaaggaggaugcccuuggguauucugcuucuugaccugguaccucuauu gcaggguacugguguuuucuucgguacuggauuccguuuguauggaaucu aaaccauaguuaugacgauugcucuuucccgugcuggaucgaguaaccca auggagcuuacuauucuugguccauggauu <<<<<<<<<<<<<<.<<<<<<<......<<<<<<..........<<<<<< <......>>>>>>>........>>>>>>........[.((((.<<<.... .....<<<.....>>><<<<<..........................>>> >><<<.<<<<<<<<....>>>>>>>>.>>>......<<<<<<<<<..... ...>>>>>>>>>..........>>>...<<<<<<<<......>>>>>>>> .............>>>>>>><<<<..<<<......>>>..>>>>...... ..)))).]...>....>>>>>>.>>>>>>>	3.1.26.5	GO:0000171 ...	P53218	32586950
5	7c7a:G (2.8)	BS01	>7c7a:A aauccaugaccaaagaaucgucacaaaucgaagcuuacaaaauggaguaa aauuuuguuuacucaguaauaugcuuuggguugaaagucucccaccaauu cguaugcggaaaacguaaugagauuuaaaaaaauuguuuaaaucaacuca uuaaggaggaugcccuuggguauucugcuucuugaccugguaccucuauu gcaggguacugguguuuucuucgguacuggauuccguuuguauggaaucu aaaccauaguuaugacgauugcucuuucccgugcuggaucgaguaaccca auggagcuuacuauucuugguccauggauu <<<<<<<<<<<<<<.<<<<<<<......<<<<<<..........<<<<<< <......>>>>>>>........>>>>>>........[.((((.<<<.... .....<<<.....>>><<<<<..........................>>> >><<<.<<<<<<<<....>>>>>>>>.>>>......<<<<<<<<<..... ...>>>>>>>>>..........>>>...<<<<<<<<......>>>>>>>> .............>>>>>>><<<<..<<<......>>>..>>>>...... ..)))).]...>....>>>>>>.>>>>>>>	3.1.26.5	GO:0000171 ...	P38291	32586950
6	7c7a:I (2.8)	BS01	>7c7a:A aauccaugaccaaagaaucgucacaaaucgaagcuuacaaaauggaguaa aauuuuguuuacucaguaauaugcuuuggguugaaagucucccaccaauu cguaugcggaaaacguaaugagauuuaaaaaaauuguuuaaaucaacuca uuaaggaggaugcccuuggguauucugcuucuugaccugguaccucuauu gcaggguacugguguuuucuucgguacuggauuccguuuguauggaaucu aaaccauaguuaugacgauugcucuuucccgugcuggaucgaguaaccca auggagcuuacuauucuugguccauggauu <<<<<<<<<<<<<<.<<<<<<<......<<<<<<..........<<<<<< <......>>>>>>>........>>>>>>........[.((((.<<<.... .....<<<.....>>><<<<<..........................>>> >><<<.<<<<<<<<....>>>>>>>>.>>>......<<<<<<<<<..... ...>>>>>>>>>..........>>>...<<<<<<<<......>>>>>>>> .............>>>>>>><<<<..<<<......>>>..>>>>...... ..)))).]...>....>>>>>>.>>>>>>>	3.1.26.5	GO:0000171 ...	P38786	32586950
7	7c7a:J (2.8)	BS01	>7c7a:A aauccaugaccaaagaaucgucacaaaucgaagcuuacaaaauggaguaa aauuuuguuuacucaguaauaugcuuuggguugaaagucucccaccaauu cguaugcggaaaacguaaugagauuuaaaaaaauuguuuaaaucaacuca uuaaggaggaugcccuuggguauucugcuucuugaccugguaccucuauu gcaggguacugguguuuucuucgguacuggauuccguuuguauggaaucu aaaccauaguuaugacgauugcucuuucccgugcuggaucgaguaaccca auggagcuuacuauucuugguccauggauu <<<<<<<<<<<<<<.<<<<<<<......<<<<<<..........<<<<<< <......>>>>>>>........>>>>>>........[.((((.<<<.... .....<<<.....>>><<<<<..........................>>> >><<<.<<<<<<<<....>>>>>>>>.>>>......<<<<<<<<<..... ...>>>>>>>>>..........>>>...<<<<<<<<......>>>>>>>> .............>>>>>>><<<<..<<<......>>>..>>>>...... ..)))).]...>....>>>>>>.>>>>>>>	3.1.26.5	GO:0000171 ...	P38786	32586950
8	7c7a:K (2.8)	BS01	>7c7a:A aauccaugaccaaagaaucgucacaaaucgaagcuuacaaaauggaguaa aauuuuguuuacucaguaauaugcuuuggguugaaagucucccaccaauu cguaugcggaaaacguaaugagauuuaaaaaaauuguuuaaaucaacuca uuaaggaggaugcccuuggguauucugcuucuugaccugguaccucuauu gcaggguacugguguuuucuucgguacuggauuccguuuguauggaaucu aaaccauaguuaugacgauugcucuuucccgugcuggaucgaguaaccca auggagcuuacuauucuugguccauggauu <<<<<<<<<<<<<<.<<<<<<<......<<<<<<..........<<<<<< <......>>>>>>>........>>>>>>........[.((((.<<<.... .....<<<.....>>><<<<<..........................>>> >><<<.<<<<<<<<....>>>>>>>>.>>>......<<<<<<<<<..... ...>>>>>>>>>..........>>>...<<<<<<<<......>>>>>>>> .............>>>>>>><<<<..<<<......>>>..>>>>...... ..)))).]...>....>>>>>>.>>>>>>>	?	GO:0000172 ...	P40993	32586950
9	7c7a:L (2.8)	BS01	>7c7a:A aauccaugaccaaagaaucgucacaaaucgaagcuuacaaaauggaguaa aauuuuguuuacucaguaauaugcuuuggguugaaagucucccaccaauu cguaugcggaaaacguaaugagauuuaaaaaaauuguuuaaaucaacuca uuaaggaggaugcccuuggguauucugcuucuugaccugguaccucuauu gcaggguacugguguuuucuucgguacuggauuccguuuguauggaaucu aaaccauaguuaugacgauugcucuuucccgugcuggaucgaguaaccca auggagcuuacuauucuugguccauggauu <<<<<<<<<<<<<<.<<<<<<<......<<<<<<..........<<<<<< <......>>>>>>>........>>>>>>........[.((((.<<<.... .....<<<.....>>><<<<<..........................>>> >><<<.<<<<<<<<....>>>>>>>>.>>>......<<<<<<<<<..... ...>>>>>>>>>..........>>>...<<<<<<<<......>>>>>>>> .............>>>>>>><<<<..<<<......>>>..>>>>...... ..)))).]...>....>>>>>>.>>>>>>>	?	GO:0000172 ...	Q12530	32586950