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BioLiP
Download all results in tab-seperated text for 15 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		RNA
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    1 7aor:ab
    (3.5)    		 BS01 >7aor:A (identical to 6hiz:CA)
    uauuauauuuauucauauaauuaauaggauaauauuuguaguuuuugaua
ccaugauaaggauuauaaauugaaaguguuaauaucauaaucaaaauuua
uuauuuauauuaaauauguauguguagauaaaauaagaaauua
.......<<<<<......................................
..................................................
...........................>>>>>...........
    		 ? N/A Q4DNX8 33168716
    2 7aor:ae
    (3.5)    		 BS01 >7aor:A (identical to 6hiz:CA)
    uauuauauuuauucauauaauuaauaggauaauauuuguaguuuuugaua
ccaugauaaggauuauaaauugaaaguguuaauaucauaaucaaaauuua
uuauuuauauuaaauauguauguguagauaaaauaagaaauua
.......<<<<<......................................
..................................................
...........................>>>>>...........
    		 ? N/A Q4D651 33168716
    3 7aor:ag
    (3.5)    		 BS01 >7aor:A (identical to 6hiz:CA)
    uauuauauuuauucauauaauuaauaggauaauauuuguaguuuuugaua
ccaugauaaggauuauaaauugaaaguguuaauaucauaaucaaaauuua
uuauuuauauuaaauauguauguguagauaaaauaagaaauua
.......<<<<<......................................
..................................................
...........................>>>>>...........
    		 ? N/A Q4DWR5 33168716
    4 7aor:aj
    (3.5)    		 BS01 >7aor:A (identical to 6hiz:CA)
    uauuauauuuauucauauaauuaauaggauaauauuuguaguuuuugaua
ccaugauaaggauuauaaauugaaaguguuaauaucauaaucaaaauuua
uuauuuauauuaaauauguauguguagauaaaauaagaaauua
.......<<<<<......................................
..................................................
...........................>>>>>...........
    		 ? N/A Q4DA51 33168716
    5 7aor:al
    (3.5)    		 BS01 >7aor:A (identical to 6hiz:CA)
    uauuauauuuauucauauaauuaauaggauaauauuuguaguuuuugaua
ccaugauaaggauuauaaauugaaaguguuaauaucauaaucaaaauuua
uuauuuauauuaaauauguauguguagauaaaauaagaaauua
.......<<<<<......................................
..................................................
...........................>>>>>...........
    		 ? N/A Q4DRU1 33168716
    6 7aor:au
    (3.5)    		 BS01 >7aor:A (identical to 6hiz:CA)
    uauuauauuuauucauauaauuaauaggauaauauuuguaguuuuugaua
ccaugauaaggauuauaaauugaaaguguuaauaucauaaucaaaauuua
uuauuuauauuaaauauguauguguagauaaaauaagaaauua
.......<<<<<......................................
..................................................
...........................>>>>>...........
    		 ? GO:0004792 ... Q4DX83 33168716
    7 7aor:aw
    (3.5)    		 BS01 >7aor:A (identical to 6hiz:CA)
    uauuauauuuauucauauaauuaauaggauaauauuuguaguuuuugaua
ccaugauaaggauuauaaauugaaaguguuaauaucauaaucaaaauuua
uuauuuauauuaaauauguauguguagauaaaauaagaaauua
.......<<<<<......................................
..................................................
...........................>>>>>...........
    		 ? N/A Q4D0Q8 33168716
    8 7aor:ax
    (3.5)    		 BS01 >7aor:A (identical to 6hiz:CA)
    uauuauauuuauucauauaauuaauaggauaauauuuguaguuuuugaua
ccaugauaaggauuauaaauugaaaguguuaauaucauaaucaaaauuua
uuauuuauauuaaauauguauguguagauaaaauaagaaauua
.......<<<<<......................................
..................................................
...........................>>>>>...........
    		 ? N/A Q4DLH4 33168716
    9 7aor:ay
    (3.5)    		 BS01 >7aor:A (identical to 6hiz:CA)
    uauuauauuuauucauauaauuaauaggauaauauuuguaguuuuugaua
ccaugauaaggauuauaaauugaaaguguuaauaucauaaucaaaauuua
uuauuuauauuaaauauguauguguagauaaaauaagaaauua
.......<<<<<......................................
..................................................
...........................>>>>>...........
    		 ? GO:0016020 ... Q4DX19 33168716
    10 7aor:az
    (3.5)    		 BS01 >7aor:A (identical to 6hiz:CA)
    uauuauauuuauucauauaauuaauaggauaauauuuguaguuuuugaua
ccaugauaaggauuauaaauugaaaguguuaauaucauaaucaaaauuua
uuauuuauauuaaauauguauguguagauaaaauaagaaauua
.......<<<<<......................................
..................................................
...........................>>>>>...........
    		 ? N/A Q4DX04 33168716
    11 7aor:d
    (3.5)    		 BS01 >7aor:A (identical to 6hiz:CA)
    uauuauauuuauucauauaauuaauaggauaauauuuguaguuuuugaua
ccaugauaaggauuauaaauugaaaguguuaauaucauaaucaaaauuua
uuauuuauauuaaauauguauguguagauaaaauaagaaauua
.......<<<<<......................................
..................................................
...........................>>>>>...........
    		 ? GO:0003735 ... Q4DEW9 33168716
    12 7aor:e
    (3.5)    		 BS01 >7aor:A (identical to 6hiz:CA)
    uauuauauuuauucauauaauuaauaggauaauauuuguaguuuuugaua
ccaugauaaggauuauaaauugaaaguguuaauaucauaaucaaaauuua
uuauuuauauuaaauauguauguguagauaaaauaagaaauua
.......<<<<<......................................
..................................................
...........................>>>>>...........
    		 ? N/A Q4DEM5 33168716
    13 7aor:h
    (3.5)    		 BS01 >7aor:A (identical to 6hiz:CA)
    uauuauauuuauucauauaauuaauaggauaauauuuguaguuuuugaua
ccaugauaaggauuauaaauugaaaguguuaauaucauaaucaaaauuua
uuauuuauauuaaauauguauguguagauaaaauaagaaauua
.......<<<<<......................................
..................................................
...........................>>>>>...........
    		 ? N/A Q4DRG2 33168716
    14 7aor:n
    (3.5)    		 BS01 >7aor:A (identical to 6hiz:CA)
    uauuauauuuauucauauaauuaauaggauaauauuuguaguuuuugaua
ccaugauaaggauuauaaauugaaaguguuaauaucauaaucaaaauuua
uuauuuauauuaaauauguauguguagauaaaauaagaaauua
.......<<<<<......................................
..................................................
...........................>>>>>...........
    		 ? N/A Q4D583 33168716
    15 7aor:s
    (3.5)    		 BS01 >7aor:A (identical to 6hiz:CA)
    uauuauauuuauucauauaauuaauaggauaauauuuguaguuuuugaua
ccaugauaaggauuauaaauugaaaguguuaauaucauaaucaaaauuua
uuauuuauauuaaauauguauguguagauaaaauaagaaauua
.......<<<<<......................................
..................................................
...........................>>>>>...........
    		 ? N/A Q4CTU7 33168716
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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