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BioLiP
Download all results in tab-seperated text for 1 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		RNA
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    1 6xdr:M
    (4.7)    		 BS01 >6xdr:A (identical to 8upo:A, 8upo:B, 8upr:A, 8upr:B, 8uql:A, 8uql:B, 8uqm:A, 8uqm:B, 8uqp:A, 8uqp:B, 8ur0:A, 8ur0:B, 8urh:A, 8urh:B, 8uri:A, 8uri:B, 8urx:A, 8urx:B, 8ury:A, 8ury:B, 4v4x:AC, 4v4z:AC, 6vu3:A, 6vyq:A, 6vyr:A, 6vys:A, 6vyt:A, 6vyu:A, 6vyw:A, 6vyx:A, 6vyy:A, 6vyz:A, 6vz2:A, 6vz3:A, 6vz5:A, 6vz7:A, 6vzj:A, 6x6t:A, 6x7f:A, 6x7k:A, 6x9q:A, 6xdq:A, 6xgf:A, 6xii:A, 6xij:A)
    cgcgggguggagcagccgguagcucgucgggcucauaacccgaaggucgu
cgguucaaauccggcccccgcaacca
.<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<
<<<.......>>>>>>>>>>>.....
    		 ? GO:0000028 ... P02359 32820061
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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