BioLiP

Download all results in tab-seperated text for 10 receptor-ligand interactions, whose format is explained at readme.txt.

Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.

Click Site # to view the binding site structure. Hover over Site # to view the binding residues.

The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.

Hover over EC number to view the full name of enzymatic activity.

Hover over GO terms to view all GO terms.

Hover over UniProt to view the protein name.

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auagggcggagggaagcucaucaguggggccacgagcugagugcguccug
ucacuccacucccaugucccuugggaaggucugagacuagggccagaggc
ggcccuaacagggcucucccugagcuucggggaggugaguucccagagaa
cggggcuccgcgcgaggucagacugggcaggagaugccguggaccccgcc
cuucggggaggggcccggcggaugccuccuuugccggagcuuggaacaga
cucacggccagcgaagugaguucaauggcugaggugagguaccccgcagg
ggaccucauaacccaauucagacuacucuccuccgcccauu
<<.<<<<<<<<<.<..((((.....<<<<..........<<<<.......
.>>>>............>>>>..[...<..<<<<<.....<<<.......
<<<<<.....>>>>><<<<<<<.....>>>>>>><<<<<<<.........
....<<<<<<.<<<<<<.......<<<<<.....<<<<<.<<.<<<<.<<
<....>>>.>>>>>>>>>>>..>>>>>>>>>.>>>>>>>>........>>
>>>>>.>>>....................))))<<<<<<<.<<<<...>>
>>>>>>>>>..]....>>>>>.>.....>>>>>>>>>>>>.
auagggcggagggaagcucaucaguggggccacgagcugagugcguccug
ucacuccacucccaugucccuugggaaggucugagacuagggccagaggc
ggcccuaacagggcucucccugagcuucggggaggugaguucccagagaa
cggggcuccgcgcgaggucagacugggcaggagaugccguggaccccgcc
cuucggggaggggcccggcggaugccuccuuugccggagcuuggaacaga
cucacggccagcgaagugaguucaauggcugaggugagguaccccgcagg
ggaccucauaacccaauucagacuacucuccuccgcccauu
<<.<<<<<<<<<.<..((((.....<<<<..........<<<<.......
.>>>>............>>>>..[...<..<<<<<.....<<<.......
<<<<<.....>>>>><<<<<<<.....>>>>>>><<<<<<<.........
....<<<<<<.<<<<<<.......<<<<<.....<<<<<.<<.<<<<.<<
<....>>>.>>>>>>>>>>>..>>>>>>>>>.>>>>>>>>........>>
>>>>>.>>>....................))))<<<<<<<.<<<<...>>
>>>>>>>>>..]....>>>>>.>.....>>>>>>>>>>>>.
auagggcggagggaagcucaucaguggggccacgagcugagugcguccug
ucacuccacucccaugucccuugggaaggucugagacuagggccagaggc
ggcccuaacagggcucucccugagcuucggggaggugaguucccagagaa
cggggcuccgcgcgaggucagacugggcaggagaugccguggaccccgcc
cuucggggaggggcccggcggaugccuccuuugccggagcuuggaacaga
cucacggccagcgaagugaguucaauggcugaggugagguaccccgcagg
ggaccucauaacccaauucagacuacucuccuccgcccauu
<<.<<<<<<<<<.<..((((.....<<<<..........<<<<.......
.>>>>............>>>>..[...<..<<<<<.....<<<.......
<<<<<.....>>>>><<<<<<<.....>>>>>>><<<<<<<.........
....<<<<<<.<<<<<<.......<<<<<.....<<<<<.<<.<<<<.<<
<....>>>.>>>>>>>>>>>..>>>>>>>>>.>>>>>>>>........>>
>>>>>.>>>....................))))<<<<<<<.<<<<...>>
>>>>>>>>>..]....>>>>>.>.....>>>>>>>>>>>>.
auagggcggagggaagcucaucaguggggccacgagcugagugcguccug
ucacuccacucccaugucccuugggaaggucugagacuagggccagaggc
ggcccuaacagggcucucccugagcuucggggaggugaguucccagagaa
cggggcuccgcgcgaggucagacugggcaggagaugccguggaccccgcc
cuucggggaggggcccggcggaugccuccuuugccggagcuuggaacaga
cucacggccagcgaagugaguucaauggcugaggugagguaccccgcagg
ggaccucauaacccaauucagacuacucuccuccgcccauu
<<.<<<<<<<<<.<..((((.....<<<<..........<<<<.......
.>>>>............>>>>..[...<..<<<<<.....<<<.......
<<<<<.....>>>>><<<<<<<.....>>>>>>><<<<<<<.........
....<<<<<<.<<<<<<.......<<<<<.....<<<<<.<<.<<<<.<<
<....>>>.>>>>>>>>>>>..>>>>>>>>>.>>>>>>>>........>>
>>>>>.>>>....................))))<<<<<<<.<<<<...>>
>>>>>>>>>..]....>>>>>.>.....>>>>>>>>>>>>.
auagggcggagggaagcucaucaguggggccacgagcugagugcguccug
ucacuccacucccaugucccuugggaaggucugagacuagggccagaggc
ggcccuaacagggcucucccugagcuucggggaggugaguucccagagaa
cggggcuccgcgcgaggucagacugggcaggagaugccguggaccccgcc
cuucggggaggggcccggcggaugccuccuuugccggagcuuggaacaga
cucacggccagcgaagugaguucaauggcugaggugagguaccccgcagg
ggaccucauaacccaauucagacuacucuccuccgcccauu
<<.<<<<<<<<<.<..((((.....<<<<..........<<<<.......
.>>>>............>>>>..[...<..<<<<<.....<<<.......
<<<<<.....>>>>><<<<<<<.....>>>>>>><<<<<<<.........
....<<<<<<.<<<<<<.......<<<<<.....<<<<<.<<.<<<<.<<
<....>>>.>>>>>>>>>>>..>>>>>>>>>.>>>>>>>>........>>
>>>>>.>>>....................))))<<<<<<<.<<<<...>>
>>>>>>>>>..]....>>>>>.>.....>>>>>>>>>>>>.
auagggcggagggaagcucaucaguggggccacgagcugagugcguccug
ucacuccacucccaugucccuugggaaggucugagacuagggccagaggc
ggcccuaacagggcucucccugagcuucggggaggugaguucccagagaa
cggggcuccgcgcgaggucagacugggcaggagaugccguggaccccgcc
cuucggggaggggcccggcggaugccuccuuugccggagcuuggaacaga
cucacggccagcgaagugaguucaauggcugaggugagguaccccgcagg
ggaccucauaacccaauucagacuacucuccuccgcccauu
<<.<<<<<<<<<.<..((((.....<<<<..........<<<<.......
.>>>>............>>>>..[...<..<<<<<.....<<<.......
<<<<<.....>>>>><<<<<<<.....>>>>>>><<<<<<<.........
....<<<<<<.<<<<<<.......<<<<<.....<<<<<.<<.<<<<.<<
<....>>>.>>>>>>>>>>>..>>>>>>>>>.>>>>>>>>........>>
>>>>>.>>>....................))))<<<<<<<.<<<<...>>
>>>>>>>>>..]....>>>>>.>.....>>>>>>>>>>>>.
auagggcggagggaagcucaucaguggggccacgagcugagugcguccug
ucacuccacucccaugucccuugggaaggucugagacuagggccagaggc
ggcccuaacagggcucucccugagcuucggggaggugaguucccagagaa
cggggcuccgcgcgaggucagacugggcaggagaugccguggaccccgcc
cuucggggaggggcccggcggaugccuccuuugccggagcuuggaacaga
cucacggccagcgaagugaguucaauggcugaggugagguaccccgcagg
ggaccucauaacccaauucagacuacucuccuccgcccauu
<<.<<<<<<<<<.<..((((.....<<<<..........<<<<.......
.>>>>............>>>>..[...<..<<<<<.....<<<.......
<<<<<.....>>>>><<<<<<<.....>>>>>>><<<<<<<.........
....<<<<<<.<<<<<<.......<<<<<.....<<<<<.<<.<<<<.<<
<....>>>.>>>>>>>>>>>..>>>>>>>>>.>>>>>>>>........>>
>>>>>.>>>....................))))<<<<<<<.<<<<...>>
>>>>>>>>>..]....>>>>>.>.....>>>>>>>>>>>>.
auagggcggagggaagcucaucaguggggccacgagcugagugcguccug
ucacuccacucccaugucccuugggaaggucugagacuagggccagaggc
ggcccuaacagggcucucccugagcuucggggaggugaguucccagagaa
cggggcuccgcgcgaggucagacugggcaggagaugccguggaccccgcc
cuucggggaggggcccggcggaugccuccuuugccggagcuuggaacaga
cucacggccagcgaagugaguucaauggcugaggugagguaccccgcagg
ggaccucauaacccaauucagacuacucuccuccgcccauu
<<.<<<<<<<<<.<..((((.....<<<<..........<<<<.......
.>>>>............>>>>..[...<..<<<<<.....<<<.......
<<<<<.....>>>>><<<<<<<.....>>>>>>><<<<<<<.........
....<<<<<<.<<<<<<.......<<<<<.....<<<<<.<<.<<<<.<<
<....>>>.>>>>>>>>>>>..>>>>>>>>>.>>>>>>>>........>>
>>>>>.>>>....................))))<<<<<<<.<<<<...>>
>>>>>>>>>..]....>>>>>.>.....>>>>>>>>>>>>.
auagggcggagggaagcucaucaguggggccacgagcugagugcguccug
ucacuccacucccaugucccuugggaaggucugagacuagggccagaggc
ggcccuaacagggcucucccugagcuucggggaggugaguucccagagaa
cggggcuccgcgcgaggucagacugggcaggagaugccguggaccccgcc
cuucggggaggggcccggcggaugccuccuuugccggagcuuggaacaga
cucacggccagcgaagugaguucaauggcugaggugagguaccccgcagg
ggaccucauaacccaauucagacuacucuccuccgcccauu
<<.<<<<<<<<<.<..((((.....<<<<..........<<<<.......
.>>>>............>>>>..[...<..<<<<<.....<<<.......
<<<<<.....>>>>><<<<<<<.....>>>>>>><<<<<<<.........
....<<<<<<.<<<<<<.......<<<<<.....<<<<<.<<.<<<<.<<
<....>>>.>>>>>>>>>>>..>>>>>>>>>.>>>>>>>>........>>
>>>>>.>>>....................))))<<<<<<<.<<<<...>>
>>>>>>>>>..]....>>>>>.>.....>>>>>>>>>>>>.
auagggcggagggaagcucaucaguggggccacgagcugagugcguccug
ucacuccacucccaugucccuugggaaggucugagacuagggccagaggc
ggcccuaacagggcucucccugagcuucggggaggugaguucccagagaa
cggggcuccgcgcgaggucagacugggcaggagaugccguggaccccgcc
cuucggggaggggcccggcggaugccuccuuugccggagcuuggaacaga
cucacggccagcgaagugaguucaauggcugaggugagguaccccgcagg
ggaccucauaacccaauucagacuacucuccuccgcccauu
<<.<<<<<<<<<.<..((((.....<<<<..........<<<<.......
.>>>>............>>>>..[...<..<<<<<.....<<<.......
<<<<<.....>>>>><<<<<<<.....>>>>>>><<<<<<<.........
....<<<<<<.<<<<<<.......<<<<<.....<<<<<.<<.<<<<.<<
<....>>>.>>>>>>>>>>>..>>>>>>>>>.>>>>>>>>........>>
>>>>>.>>>....................))))<<<<<<<.<<<<...>>
>>>>>>>>>..]....>>>>>.>.....>>>>>>>>>>>>.

#	PDB (resolution)	Site #	RNA sequence	EC number	GO terms	UniProt	PubMed
1	6ahr:B (3.92)	BS01	>6ahr:A (identical to 6ahu:A) auagggcggagggaagcucaucaguggggccacgagcugagugcguccug ucacuccacucccaugucccuugggaaggucugagacuagggccagaggc ggcccuaacagggcucucccugagcuucggggaggugaguucccagagaa cggggcuccgcgcgaggucagacugggcaggagaugccguggaccccgcc cuucggggaggggcccggcggaugccuccuuugccggagcuuggaacaga cucacggccagcgaagugaguucaauggcugaggugagguaccccgcagg ggaccucauaacccaauucagacuacucuccuccgcccauu <<.<<<<<<<<<.<..((((.....<<<<..........<<<<....... .>>>>............>>>>..[...<..<<<<<.....<<<....... <<<<<.....>>>>><<<<<<<.....>>>>>>><<<<<<<......... ....<<<<<<.<<<<<<.......<<<<<.....<<<<<.<<.<<<<.<< <....>>>.>>>>>>>>>>>..>>>>>>>>>.>>>>>>>>........>> >>>>>.>>>....................))))<<<<<<<.<<<<...>> >>>>>>>>>..]....>>>>>.>.....>>>>>>>>>>>>.	3.1.26.5	GO:0000172 ...	Q99575	30454648
2	6ahr:C (3.92)	BS01	>6ahr:A (identical to 6ahu:A) auagggcggagggaagcucaucaguggggccacgagcugagugcguccug ucacuccacucccaugucccuugggaaggucugagacuagggccagaggc ggcccuaacagggcucucccugagcuucggggaggugaguucccagagaa cggggcuccgcgcgaggucagacugggcaggagaugccguggaccccgcc cuucggggaggggcccggcggaugccuccuuugccggagcuuggaacaga cucacggccagcgaagugaguucaauggcugaggugagguaccccgcagg ggaccucauaacccaauucagacuacucuccuccgcccauu <<.<<<<<<<<<.<..((((.....<<<<..........<<<<....... .>>>>............>>>>..[...<..<<<<<.....<<<....... <<<<<.....>>>>><<<<<<<.....>>>>>>><<<<<<<......... ....<<<<<<.<<<<<<.......<<<<<.....<<<<<.<<.<<<<.<< <....>>>.>>>>>>>>>>>..>>>>>>>>>.>>>>>>>>........>> >>>>>.>>>....................))))<<<<<<<.<<<<...>> >>>>>>>>>..]....>>>>>.>.....>>>>>>>>>>>>.	3.1.26.5	GO:0000172 ...	P78345	30454648
3	6ahr:D (3.92)	BS01	>6ahr:A (identical to 6ahu:A) auagggcggagggaagcucaucaguggggccacgagcugagugcguccug ucacuccacucccaugucccuugggaaggucugagacuagggccagaggc ggcccuaacagggcucucccugagcuucggggaggugaguucccagagaa cggggcuccgcgcgaggucagacugggcaggagaugccguggaccccgcc cuucggggaggggcccggcggaugccuccuuugccggagcuuggaacaga cucacggccagcgaagugaguucaauggcugaggugagguaccccgcagg ggaccucauaacccaauucagacuacucuccuccgcccauu <<.<<<<<<<<<.<..((((.....<<<<..........<<<<....... .>>>>............>>>>..[...<..<<<<<.....<<<....... <<<<<.....>>>>><<<<<<<.....>>>>>>><<<<<<<......... ....<<<<<<.<<<<<<.......<<<<<.....<<<<<.<<.<<<<.<< <....>>>.>>>>>>>>>>>..>>>>>>>>>.>>>>>>>>........>> >>>>>.>>>....................))))<<<<<<<.<<<<...>> >>>>>>>>>..]....>>>>>.>.....>>>>>>>>>>>>.	3.1.26.5	GO:0000172 ...	O95707	30454648
4	6ahr:E (3.92)	BS01	>6ahr:A (identical to 6ahu:A) auagggcggagggaagcucaucaguggggccacgagcugagugcguccug ucacuccacucccaugucccuugggaaggucugagacuagggccagaggc ggcccuaacagggcucucccugagcuucggggaggugaguucccagagaa cggggcuccgcgcgaggucagacugggcaggagaugccguggaccccgcc cuucggggaggggcccggcggaugccuccuuugccggagcuuggaacaga cucacggccagcgaagugaguucaauggcugaggugagguaccccgcagg ggaccucauaacccaauucagacuacucuccuccgcccauu <<.<<<<<<<<<.<..((((.....<<<<..........<<<<....... .>>>>............>>>>..[...<..<<<<<.....<<<....... <<<<<.....>>>>><<<<<<<.....>>>>>>><<<<<<<......... ....<<<<<<.<<<<<<.......<<<<<.....<<<<<.<<.<<<<.<< <....>>>.>>>>>>>>>>>..>>>>>>>>>.>>>>>>>>........>> >>>>>.>>>....................))))<<<<<<<.<<<<...>> >>>>>>>>>..]....>>>>>.>.....>>>>>>>>>>>>.	3.1.26.5	GO:0000172 ...	Q969H6	30454648
5	6ahr:F (3.92)	BS01	>6ahr:A (identical to 6ahu:A) auagggcggagggaagcucaucaguggggccacgagcugagugcguccug ucacuccacucccaugucccuugggaaggucugagacuagggccagaggc ggcccuaacagggcucucccugagcuucggggaggugaguucccagagaa cggggcuccgcgcgaggucagacugggcaggagaugccguggaccccgcc cuucggggaggggcccggcggaugccuccuuugccggagcuuggaacaga cucacggccagcgaagugaguucaauggcugaggugagguaccccgcagg ggaccucauaacccaauucagacuacucuccuccgcccauu <<.<<<<<<<<<.<..((((.....<<<<..........<<<<....... .>>>>............>>>>..[...<..<<<<<.....<<<....... <<<<<.....>>>>><<<<<<<.....>>>>>>><<<<<<<......... ....<<<<<<.<<<<<<.......<<<<<.....<<<<<.<<.<<<<.<< <....>>>.>>>>>>>>>>>..>>>>>>>>>.>>>>>>>>........>> >>>>>.>>>....................))))<<<<<<<.<<<<...>> >>>>>>>>>..]....>>>>>.>.....>>>>>>>>>>>>.	3.1.26.5	GO:0000172 ...	Q9BUL9	30454648
6	6ahr:G (3.92)	BS01	>6ahr:A (identical to 6ahu:A) auagggcggagggaagcucaucaguggggccacgagcugagugcguccug ucacuccacucccaugucccuugggaaggucugagacuagggccagaggc ggcccuaacagggcucucccugagcuucggggaggugaguucccagagaa cggggcuccgcgcgaggucagacugggcaggagaugccguggaccccgcc cuucggggaggggcccggcggaugccuccuuugccggagcuuggaacaga cucacggccagcgaagugaguucaauggcugaggugagguaccccgcagg ggaccucauaacccaauucagacuacucuccuccgcccauu <<.<<<<<<<<<.<..((((.....<<<<..........<<<<....... .>>>>............>>>>..[...<..<<<<<.....<<<....... <<<<<.....>>>>><<<<<<<.....>>>>>>><<<<<<<......... ....<<<<<<.<<<<<<.......<<<<<.....<<<<<.<<.<<<<.<< <....>>>.>>>>>>>>>>>..>>>>>>>>>.>>>>>>>>........>> >>>>>.>>>....................))))<<<<<<<.<<<<...>> >>>>>>>>>..]....>>>>>.>.....>>>>>>>>>>>>.	3.1.26.5	GO:0000172 ...	O75817	30454648
7	6ahr:I (3.92)	BS01	>6ahr:A (identical to 6ahu:A) auagggcggagggaagcucaucaguggggccacgagcugagugcguccug ucacuccacucccaugucccuugggaaggucugagacuagggccagaggc ggcccuaacagggcucucccugagcuucggggaggugaguucccagagaa cggggcuccgcgcgaggucagacugggcaggagaugccguggaccccgcc cuucggggaggggcccggcggaugccuccuuugccggagcuuggaacaga cucacggccagcgaagugaguucaauggcugaggugagguaccccgcagg ggaccucauaacccaauucagacuacucuccuccgcccauu <<.<<<<<<<<<.<..((((.....<<<<..........<<<<....... .>>>>............>>>>..[...<..<<<<<.....<<<....... <<<<<.....>>>>><<<<<<<.....>>>>>>><<<<<<<......... ....<<<<<<.<<<<<<.......<<<<<.....<<<<<.<<.<<<<.<< <....>>>.>>>>>>>>>>>..>>>>>>>>>.>>>>>>>>........>> >>>>>.>>>....................))))<<<<<<<.<<<<...>> >>>>>>>>>..]....>>>>>.>.....>>>>>>>>>>>>.	3.1.26.5	GO:0000172 ...	P78346	30454648
8	6ahr:J (3.92)	BS01	>6ahr:A (identical to 6ahu:A) auagggcggagggaagcucaucaguggggccacgagcugagugcguccug ucacuccacucccaugucccuugggaaggucugagacuagggccagaggc ggcccuaacagggcucucccugagcuucggggaggugaguucccagagaa cggggcuccgcgcgaggucagacugggcaggagaugccguggaccccgcc cuucggggaggggcccggcggaugccuccuuugccggagcuuggaacaga cucacggccagcgaagugaguucaauggcugaggugagguaccccgcagg ggaccucauaacccaauucagacuacucuccuccgcccauu <<.<<<<<<<<<.<..((((.....<<<<..........<<<<....... .>>>>............>>>>..[...<..<<<<<.....<<<....... <<<<<.....>>>>><<<<<<<.....>>>>>>><<<<<<<......... ....<<<<<<.<<<<<<.......<<<<<.....<<<<<.<<.<<<<.<< <....>>>.>>>>>>>>>>>..>>>>>>>>>.>>>>>>>>........>> >>>>>.>>>....................))))<<<<<<<.<<<<...>> >>>>>>>>>..]....>>>>>.>.....>>>>>>>>>>>>.	3.1.26.5	GO:0000172 ...	P78346	30454648
9	6ahr:K (3.92)	BS01	>6ahr:A (identical to 6ahu:A) auagggcggagggaagcucaucaguggggccacgagcugagugcguccug ucacuccacucccaugucccuugggaaggucugagacuagggccagaggc ggcccuaacagggcucucccugagcuucggggaggugaguucccagagaa cggggcuccgcgcgaggucagacugggcaggagaugccguggaccccgcc cuucggggaggggcccggcggaugccuccuuugccggagcuuggaacaga cucacggccagcgaagugaguucaauggcugaggugagguaccccgcagg ggaccucauaacccaauucagacuacucuccuccgcccauu <<.<<<<<<<<<.<..((((.....<<<<..........<<<<....... .>>>>............>>>>..[...<..<<<<<.....<<<....... <<<<<.....>>>>><<<<<<<.....>>>>>>><<<<<<<......... ....<<<<<<.<<<<<<.......<<<<<.....<<<<<.<<.<<<<.<< <....>>>.>>>>>>>>>>>..>>>>>>>>>.>>>>>>>>........>> >>>>>.>>>....................))))<<<<<<<.<<<<...>> >>>>>>>>>..]....>>>>>.>.....>>>>>>>>>>>>.	3.1.26.5	GO:0001682 ...	Q9H633	30454648
10	6ahr:L (3.92)	BS01	>6ahr:A (identical to 6ahu:A) auagggcggagggaagcucaucaguggggccacgagcugagugcguccug ucacuccacucccaugucccuugggaaggucugagacuagggccagaggc ggcccuaacagggcucucccugagcuucggggaggugaguucccagagaa cggggcuccgcgcgaggucagacugggcaggagaugccguggaccccgcc cuucggggaggggcccggcggaugccuccuuugccggagcuuggaacaga cucacggccagcgaagugaguucaauggcugaggugagguaccccgcagg ggaccucauaacccaauucagacuacucuccuccgcccauu <<.<<<<<<<<<.<..((((.....<<<<..........<<<<....... .>>>>............>>>>..[...<..<<<<<.....<<<....... <<<<<.....>>>>><<<<<<<.....>>>>>>><<<<<<<......... ....<<<<<<.<<<<<<.......<<<<<.....<<<<<.<<.<<<<.<< <....>>>.>>>>>>>>>>>..>>>>>>>>>.>>>>>>>>........>> >>>>>.>>>....................))))<<<<<<<.<<<<...>> >>>>>>>>>..]....>>>>>.>.....>>>>>>>>>>>>.	3.1.26.5	GO:0000171 ...	O75818	30454648