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BioLiP
Download all results in tab-seperated text for 16 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6jlu:6 (3.02) BS20 CLA N/A GO:0009765 ... N/A 31371578
    2 6jlu:9 (3.02) BS01 A86 N/A GO:0009765 ... N/A 31371578
    3 6jlu:9 (3.02) BS02 A86 N/A GO:0009765 ... N/A 31371578
    4 6jlu:9 (3.02) BS03 A86 N/A GO:0009765 ... N/A 31371578
    5 6jlu:9 (3.02) BS04 A86 N/A GO:0009765 ... N/A 31371578
    6 6jlu:9 (3.02) BS05 A86 N/A GO:0009765 ... N/A 31371578
    7 6jlu:9 (3.02) BS06 A86 N/A GO:0009765 ... N/A 31371578
    8 6jlu:9 (3.02) BS07 CLA N/A GO:0009765 ... N/A 31371578
    9 6jlu:9 (3.02) BS08 CLA N/A GO:0009765 ... N/A 31371578
    10 6jlu:9 (3.02) BS09 KC2 N/A GO:0009765 ... N/A 31371578
    11 6jlu:9 (3.02) BS10 CLA N/A GO:0009765 ... N/A 31371578
    12 6jlu:9 (3.02) BS11 CLA N/A GO:0009765 ... N/A 31371578
    13 6jlu:9 (3.02) BS12 CLA N/A GO:0009765 ... N/A 31371578
    14 6jlu:9 (3.02) BS13 CLA N/A GO:0009765 ... N/A 31371578
    15 6jlu:9 (3.02) BS14 KC1 N/A GO:0009765 ... N/A 31371578
    16 6jlu:9 (3.02) BS15 CLA N/A GO:0009765 ... N/A 31371578
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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