BioLiP

Download all results in tab-seperated text for 10 receptor-ligand interactions, whose format is explained at readme.txt.

Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.

Click Site # to view the binding site structure. Hover over Site # to view the binding residues.

The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.

Hover over EC number to view the full name of enzymatic activity.

Hover over GO terms to view all GO terms.

Hover over UniProt to view the protein name.

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#	PDB (resolution)	Site #	RNA sequence	EC number	GO terms	UniProt	PubMed
1	6sgc:C2 (2.8)	BS02	>6sgc:84 (identical to 8b5l:8, 8b6c:8, 9bdl:A58S, 9bdn:A58S, 9bdp:A58S, 8bhf:C2, 8bpo:C1, 6d90:8, 6d9j:8, 6hcf:82, 6hcj:81, 6hcm:82, 6hcq:81, 5lzs:8, 5lzt:8, 5lzu:8, 5lzv:8, 5lzw:8, 5lzx:8, 5lzy:8, 5lzz:8, 7mdz:8, 6mtb:8, 6mtc:8, 6mtd:8, 6mte:8, 7nwg:81, 7nwh:8, 6p5i:8, 6p5j:8, 6p5k:8, 6p5n:8, 6r5q:8, 6r6g:8, 6r7q:8, 6t59:84, 7tor:A58S, 7uck:8) cgacucuuagcgguggaucacucggcucgugcgucgaugaagaacgcagc uagcugcgagaauuaaugugaauugcagguugaucaucgacacuucgaac gcacuugcggccccggguuccucccggggcuacgccugucugagcgucgc u .........................................<<<<<<<<< ....>>>>.....<.<<<......>>........>>>..>...>>>.... <<<..>>><<<<<<<<<....>.>>>>>>>>................... .	N/A	GO:0003735 ...	N/A	31768042
2	6sgc:G2 (2.8)	BS02	>6sgc:84 (identical to 8b5l:8, 8b6c:8, 9bdl:A58S, 9bdn:A58S, 9bdp:A58S, 8bhf:C2, 8bpo:C1, 6d90:8, 6d9j:8, 6hcf:82, 6hcj:81, 6hcm:82, 6hcq:81, 5lzs:8, 5lzt:8, 5lzu:8, 5lzv:8, 5lzw:8, 5lzx:8, 5lzy:8, 5lzz:8, 7mdz:8, 6mtb:8, 6mtc:8, 6mtd:8, 6mte:8, 7nwg:81, 7nwh:8, 6p5i:8, 6p5j:8, 6p5k:8, 6p5n:8, 6r5q:8, 6r6g:8, 6r7q:8, 6t59:84, 7tor:A58S, 7uck:8) cgacucuuagcgguggaucacucggcucgugcgucgaugaagaacgcagc uagcugcgagaauuaaugugaauugcagguugaucaucgacacuucgaac gcacuugcggccccggguuccucccggggcuacgccugucugagcgucgc u .........................................<<<<<<<<< ....>>>>.....<.<<<......>>........>>>..>...>>>.... <<<..>>><<<<<<<<<....>.>>>>>>>>................... .	N/A	GO:0042254 ...	N/A	31768042
3	6sgc:L2 (2.8)	BS02	>6sgc:84 (identical to 8b5l:8, 8b6c:8, 9bdl:A58S, 9bdn:A58S, 9bdp:A58S, 8bhf:C2, 8bpo:C1, 6d90:8, 6d9j:8, 6hcf:82, 6hcj:81, 6hcm:82, 6hcq:81, 5lzs:8, 5lzt:8, 5lzu:8, 5lzv:8, 5lzw:8, 5lzx:8, 5lzy:8, 5lzz:8, 7mdz:8, 6mtb:8, 6mtc:8, 6mtd:8, 6mte:8, 7nwg:81, 7nwh:8, 6p5i:8, 6p5j:8, 6p5k:8, 6p5n:8, 6r5q:8, 6r6g:8, 6r7q:8, 6t59:84, 7tor:A58S, 7uck:8) cgacucuuagcgguggaucacucggcucgugcgucgaugaagaacgcagc uagcugcgagaauuaaugugaauugcagguugaucaucgacacuucgaac gcacuugcggccccggguuccucccggggcuacgccugucugagcgucgc u .........................................<<<<<<<<< ....>>>>.....<.<<<......>>........>>>..>...>>>.... <<<..>>><<<<<<<<<....>.>>>>>>>>................... .	N/A	GO:0003735 ...	N/A	31768042
4	6sgc:N2 (2.8)	BS02	>6sgc:84 (identical to 8b5l:8, 8b6c:8, 9bdl:A58S, 9bdn:A58S, 9bdp:A58S, 8bhf:C2, 8bpo:C1, 6d90:8, 6d9j:8, 6hcf:82, 6hcj:81, 6hcm:82, 6hcq:81, 5lzs:8, 5lzt:8, 5lzu:8, 5lzv:8, 5lzw:8, 5lzx:8, 5lzy:8, 5lzz:8, 7mdz:8, 6mtb:8, 6mtc:8, 6mtd:8, 6mte:8, 7nwg:81, 7nwh:8, 6p5i:8, 6p5j:8, 6p5k:8, 6p5n:8, 6r5q:8, 6r6g:8, 6r7q:8, 6t59:84, 7tor:A58S, 7uck:8) cgacucuuagcgguggaucacucggcucgugcgucgaugaagaacgcagc uagcugcgagaauuaaugugaauugcagguugaucaucgacacuucgaac gcacuugcggccccggguuccucccggggcuacgccugucugagcgucgc u .........................................<<<<<<<<< ....>>>>.....<.<<<......>>........>>>..>...>>>.... <<<..>>><<<<<<<<<....>.>>>>>>>>................... .	?	GO:0002181 ...	G1T0C1	31768042
5	6sgc:P2 (2.8)	BS02	>6sgc:84 (identical to 8b5l:8, 8b6c:8, 9bdl:A58S, 9bdn:A58S, 9bdp:A58S, 8bhf:C2, 8bpo:C1, 6d90:8, 6d9j:8, 6hcf:82, 6hcj:81, 6hcm:82, 6hcq:81, 5lzs:8, 5lzt:8, 5lzu:8, 5lzv:8, 5lzw:8, 5lzx:8, 5lzy:8, 5lzz:8, 7mdz:8, 6mtb:8, 6mtc:8, 6mtd:8, 6mte:8, 7nwg:81, 7nwh:8, 6p5i:8, 6p5j:8, 6p5k:8, 6p5n:8, 6r5q:8, 6r6g:8, 6r7q:8, 6t59:84, 7tor:A58S, 7uck:8) cgacucuuagcgguggaucacucggcucgugcgucgaugaagaacgcagc uagcugcgagaauuaaugugaauugcagguugaucaucgacacuucgaac gcacuugcggccccggguuccucccggggcuacgccugucugagcgucgc u .........................................<<<<<<<<< ....>>>>.....<.<<<......>>........>>>..>...>>>.... <<<..>>><<<<<<<<<....>.>>>>>>>>................... .	?	GO:0002181 ...	G1SCJ6	31768042
6	6sgc:X2 (2.8)	BS02	>6sgc:84 (identical to 8b5l:8, 8b6c:8, 9bdl:A58S, 9bdn:A58S, 9bdp:A58S, 8bhf:C2, 8bpo:C1, 6d90:8, 6d9j:8, 6hcf:82, 6hcj:81, 6hcm:82, 6hcq:81, 5lzs:8, 5lzt:8, 5lzu:8, 5lzv:8, 5lzw:8, 5lzx:8, 5lzy:8, 5lzz:8, 7mdz:8, 6mtb:8, 6mtc:8, 6mtd:8, 6mte:8, 7nwg:81, 7nwh:8, 6p5i:8, 6p5j:8, 6p5k:8, 6p5n:8, 6r5q:8, 6r6g:8, 6r7q:8, 6t59:84, 7tor:A58S, 7uck:8) cgacucuuagcgguggaucacucggcucgugcgucgaugaagaacgcagc uagcugcgagaauuaaugugaauugcagguugaucaucgacacuucgaac gcacuugcggccccggguuccucccggggcuacgccugucugagcgucgc u .........................................<<<<<<<<< ....>>>>.....<.<<<......>>........>>>..>...>>>.... <<<..>>><<<<<<<<<....>.>>>>>>>>................... .	?	GO:0000027 ...	G1SE76	31768042
7	6sgc:Y2 (2.8)	BS02	>6sgc:84 (identical to 8b5l:8, 8b6c:8, 9bdl:A58S, 9bdn:A58S, 9bdp:A58S, 8bhf:C2, 8bpo:C1, 6d90:8, 6d9j:8, 6hcf:82, 6hcj:81, 6hcm:82, 6hcq:81, 5lzs:8, 5lzt:8, 5lzu:8, 5lzv:8, 5lzw:8, 5lzx:8, 5lzy:8, 5lzz:8, 7mdz:8, 6mtb:8, 6mtc:8, 6mtd:8, 6mte:8, 7nwg:81, 7nwh:8, 6p5i:8, 6p5j:8, 6p5k:8, 6p5n:8, 6r5q:8, 6r6g:8, 6r7q:8, 6t59:84, 7tor:A58S, 7uck:8) cgacucuuagcgguggaucacucggcucgugcgucgaugaagaacgcagc uagcugcgagaauuaaugugaauugcagguugaucaucgacacuucgaac gcacuugcggccccggguuccucccggggcuacgccugucugagcgucgc u .........................................<<<<<<<<< ....>>>>.....<.<<<......>>........>>>..>...>>>.... <<<..>>><<<<<<<<<....>.>>>>>>>>................... .	?	GO:0002181 ...	G1SQH0	31768042
8	6sgc:h2 (2.8)	BS02	>6sgc:84 (identical to 8b5l:8, 8b6c:8, 9bdl:A58S, 9bdn:A58S, 9bdp:A58S, 8bhf:C2, 8bpo:C1, 6d90:8, 6d9j:8, 6hcf:82, 6hcj:81, 6hcm:82, 6hcq:81, 5lzs:8, 5lzt:8, 5lzu:8, 5lzv:8, 5lzw:8, 5lzx:8, 5lzy:8, 5lzz:8, 7mdz:8, 6mtb:8, 6mtc:8, 6mtd:8, 6mte:8, 7nwg:81, 7nwh:8, 6p5i:8, 6p5j:8, 6p5k:8, 6p5n:8, 6r5q:8, 6r6g:8, 6r7q:8, 6t59:84, 7tor:A58S, 7uck:8) cgacucuuagcgguggaucacucggcucgugcgucgaugaagaacgcagc uagcugcgagaauuaaugugaauugcagguugaucaucgacacuucgaac gcacuugcggccccggguuccucccggggcuacgccugucugagcgucgc u .........................................<<<<<<<<< ....>>>>.....<.<<<......>>........>>>..>...>>>.... <<<..>>><<<<<<<<<....>.>>>>>>>>................... .	?	GO:0000463 ...	G1SIT5	31768042
9	6sgc:j2 (2.8)	BS02	>6sgc:84 (identical to 8b5l:8, 8b6c:8, 9bdl:A58S, 9bdn:A58S, 9bdp:A58S, 8bhf:C2, 8bpo:C1, 6d90:8, 6d9j:8, 6hcf:82, 6hcj:81, 6hcm:82, 6hcq:81, 5lzs:8, 5lzt:8, 5lzu:8, 5lzv:8, 5lzw:8, 5lzx:8, 5lzy:8, 5lzz:8, 7mdz:8, 6mtb:8, 6mtc:8, 6mtd:8, 6mte:8, 7nwg:81, 7nwh:8, 6p5i:8, 6p5j:8, 6p5k:8, 6p5n:8, 6r5q:8, 6r6g:8, 6r7q:8, 6t59:84, 7tor:A58S, 7uck:8) cgacucuuagcgguggaucacucggcucgugcgucgaugaagaacgcagc uagcugcgagaauuaaugugaauugcagguugaucaucgacacuucgaac gcacuugcggccccggguuccucccggggcuacgccugucugagcgucgc u .........................................<<<<<<<<< ....>>>>.....<.<<<......>>........>>>..>...>>>.... <<<..>>><<<<<<<<<....>.>>>>>>>>................... .	?	GO:0003723 ...	U3KPD5	31768042
10	6sgc:l2 (2.8)	BS02	>6sgc:84 (identical to 8b5l:8, 8b6c:8, 9bdl:A58S, 9bdn:A58S, 9bdp:A58S, 8bhf:C2, 8bpo:C1, 6d90:8, 6d9j:8, 6hcf:82, 6hcj:81, 6hcm:82, 6hcq:81, 5lzs:8, 5lzt:8, 5lzu:8, 5lzv:8, 5lzw:8, 5lzx:8, 5lzy:8, 5lzz:8, 7mdz:8, 6mtb:8, 6mtc:8, 6mtd:8, 6mte:8, 7nwg:81, 7nwh:8, 6p5i:8, 6p5j:8, 6p5k:8, 6p5n:8, 6r5q:8, 6r6g:8, 6r7q:8, 6t59:84, 7tor:A58S, 7uck:8) cgacucuuagcgguggaucacucggcucgugcgucgaugaagaacgcagc uagcugcgagaauuaaugugaauugcagguugaucaucgacacuucgaac gcacuugcggccccggguuccucccggggcuacgccugucugagcgucgc u .........................................<<<<<<<<< ....>>>>.....<.<<<......>>........>>>..>...>>>.... <<<..>>><<<<<<<<<....>.>>>>>>>>................... .	?	GO:0003735 ...	G1TTN1	31768042