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BioLiP
Download all results in tab-seperated text for 1 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		RNA
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    1 7pam:v
    (6.8)    		 BS02 >7pam:8 (identical to 7p6z:7, 7pah:7, 7pah:8, 7pai:7, 7paj:6, 7paj:7, 7paj:8, 7pak:6, 7pak:7, 7pal:6, 7pal:7, 7pan:7, 7pan:8, 7pao:8, 7paq:7, 7paq:8, 7par:7, 7par:8, 7ph9:7, 7pha:6, 7pha:7, 7phb:6, 7phb:7, 7phc:8, 7pi8:7, 7pi9:6, 7pi9:7, 7pia:7, 7pia:8, 7pib:7, 7pib:8, 7pic:8, 7pio:7, 7pip:6, 7pip:7, 7piq:7, 7pir:8, 7pis:6, 7pis:8, 7pit:7, 7pit:8)
    ggucuuguagcucagucgguagagcaacggucugaagaaccgugugucgg
caguucgauucugcccgagaccacca
<<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<
<<<.......>>>>>>>>>>>>....
    		 ? GO:0003735 ... P75171 36171285
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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