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BioLiP
Download all results in tab-seperated text for 6 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		RNA
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    1 7mdz:D
    (3.2)    		 BS02 >7mdz:7 (identical to 5aj0:A4, 8bhf:B2, 4d5y:4, 4d67:4, 6d90:7, 6d9j:7, 6gz3:A4, 6gz4:A4, 6gz5:A4, 5lzs:7, 6ole:E, 6olf:E, 6olg:A4, 6oli:E, 6olz:A4, 6om0:E, 6om7:E, 7oyd:K, 6p5i:7, 6p5j:7, 6p5k:7, 6p5n:7, 8qfd:7, 7qgg:E, 6sgc:74, 6swa:s, 4ujc:A4, 4ujd:A4, 4uje:A4, 6w6l:E)
    gucuacggccauaccacccugaacgcgcccgaucucgucugaucucggaa
gcuaagcagggucgggccugguuaguacuuggaugggagaccgccuggga
auaccgggugcuguaggcu
<<<<<<<<<....<<<<<<<<.....<<<<<<............>>>>..
>>....>>>>>>.>><<<<<<<.....<<.<<..<<....>>.>>.>>..
..>>>>>>>>>>>>>>>>.
    		 ? GO:0000027 ... P19949 34403584
    2 7mdz:F
    (3.2)    		 BS02 >7mdz:7 (identical to 5aj0:A4, 8bhf:B2, 4d5y:4, 4d67:4, 6d90:7, 6d9j:7, 6gz3:A4, 6gz4:A4, 6gz5:A4, 5lzs:7, 6ole:E, 6olf:E, 6olg:A4, 6oli:E, 6olz:A4, 6om0:E, 6om7:E, 7oyd:K, 6p5i:7, 6p5j:7, 6p5k:7, 6p5n:7, 8qfd:7, 7qgg:E, 6sgc:74, 6swa:s, 4ujc:A4, 4ujd:A4, 4uje:A4, 6w6l:E)
    gucuacggccauaccacccugaacgcgcccgaucucgucugaucucggaa
gcuaagcagggucgggccugguuaguacuuggaugggagaccgccuggga
auaccgggugcuguaggcu
<<<<<<<<<....<<<<<<<<.....<<<<<<............>>>>..
>>....>>>>>>.>><<<<<<<.....<<.<<..<<....>>.>>.>>..
..>>>>>>>>>>>>>>>>.
    		 ? GO:0000463 ... G1TUB1 34403584
    3 7mdz:I
    (3.2)    		 BS02 >7mdz:7 (identical to 5aj0:A4, 8bhf:B2, 4d5y:4, 4d67:4, 6d90:7, 6d9j:7, 6gz3:A4, 6gz4:A4, 6gz5:A4, 5lzs:7, 6ole:E, 6olf:E, 6olg:A4, 6oli:E, 6olz:A4, 6om0:E, 6om7:E, 7oyd:K, 6p5i:7, 6p5j:7, 6p5k:7, 6p5n:7, 8qfd:7, 7qgg:E, 6sgc:74, 6swa:s, 4ujc:A4, 4ujd:A4, 4uje:A4, 6w6l:E)
    gucuacggccauaccacccugaacgcgcccgaucucgucugaucucggaa
gcuaagcagggucgggccugguuaguacuuggaugggagaccgccuggga
auaccgggugcuguaggcu
<<<<<<<<<....<<<<<<<<.....<<<<<<............>>>>..
>>....>>>>>>.>><<<<<<<.....<<.<<..<<....>>.>>.>>..
..>>>>>>>>>>>>>>>>.
    		 ? GO:0000027 ... B7NZQ2 34403584
    4 7mdz:J
    (3.2)    		 BS02 >7mdz:7 (identical to 5aj0:A4, 8bhf:B2, 4d5y:4, 4d67:4, 6d90:7, 6d9j:7, 6gz3:A4, 6gz4:A4, 6gz5:A4, 5lzs:7, 6ole:E, 6olf:E, 6olg:A4, 6oli:E, 6olz:A4, 6om0:E, 6om7:E, 7oyd:K, 6p5i:7, 6p5j:7, 6p5k:7, 6p5n:7, 8qfd:7, 7qgg:E, 6sgc:74, 6swa:s, 4ujc:A4, 4ujd:A4, 4uje:A4, 6w6l:E)
    gucuacggccauaccacccugaacgcgcccgaucucgucugaucucggaa
gcuaagcagggucgggccugguuaguacuuggaugggagaccgccuggga
auaccgggugcuguaggcu
<<<<<<<<<....<<<<<<<<.....<<<<<<............>>>>..
>>....>>>>>>.>><<<<<<<.....<<.<<..<<....>>.>>.>>..
..>>>>>>>>>>>>>>>>.
    		 ? GO:0003723 ... G1TUB8 34403584
    5 7mdz:S
    (3.2)    		 BS02 >7mdz:7 (identical to 5aj0:A4, 8bhf:B2, 4d5y:4, 4d67:4, 6d90:7, 6d9j:7, 6gz3:A4, 6gz4:A4, 6gz5:A4, 5lzs:7, 6ole:E, 6olf:E, 6olg:A4, 6oli:E, 6olz:A4, 6om0:E, 6om7:E, 7oyd:K, 6p5i:7, 6p5j:7, 6p5k:7, 6p5n:7, 8qfd:7, 7qgg:E, 6sgc:74, 6swa:s, 4ujc:A4, 4ujd:A4, 4uje:A4, 6w6l:E)
    gucuacggccauaccacccugaacgcgcccgaucucgucugaucucggaa
gcuaagcagggucgggccugguuaguacuuggaugggagaccgccuggga
auaccgggugcuguaggcu
<<<<<<<<<....<<<<<<<<.....<<<<<<............>>>>..
>>....>>>>>>.>><<<<<<<.....<<.<<..<<....>>.>>.>>..
..>>>>>>>>>>>>>>>>.
    		 ? GO:0003735 ... G1TTY7 34403584
    6 7mdz:T
    (3.2)    		 BS02 >7mdz:7 (identical to 5aj0:A4, 8bhf:B2, 4d5y:4, 4d67:4, 6d90:7, 6d9j:7, 6gz3:A4, 6gz4:A4, 6gz5:A4, 5lzs:7, 6ole:E, 6olf:E, 6olg:A4, 6oli:E, 6olz:A4, 6om0:E, 6om7:E, 7oyd:K, 6p5i:7, 6p5j:7, 6p5k:7, 6p5n:7, 8qfd:7, 7qgg:E, 6sgc:74, 6swa:s, 4ujc:A4, 4ujd:A4, 4uje:A4, 6w6l:E)
    gucuacggccauaccacccugaacgcgcccgaucucgucugaucucggaa
gcuaagcagggucgggccugguuaguacuuggaugggagaccgccuggga
auaccgggugcuguaggcu
<<<<<<<<<....<<<<<<<<.....<<<<<<............>>>>..
>>....>>>>>>.>><<<<<<<.....<<.<<..<<....>>.>>.>>..
..>>>>>>>>>>>>>>>>.
    		 ? GO:0003735 ... G1SHQ2 34403584
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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