BioLiP

Download all results in tab-seperated text for 10 receptor-ligand interactions, whose format is explained at readme.txt.

Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.

Click Site # to view the binding site structure. Hover over Site # to view the binding residues.

The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.

Hover over EC number to view the full name of enzymatic activity.

Hover over GO terms to view all GO terms.

Hover over UniProt to view the protein name.

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aacgugucgcgauggaugacuuggcuuccuauuucguugaagaacgcagu
aaagugcgauaagugguaucaauugcagaaucauucaauuaccgaaucuu
ugaacgcaaacggcgcaugggagaagcucgugucauccccgugcaugcca
uacucagugucga
.........................................<<<<<<.((
.....>>>.....<<<<<......)).............>>>>.>...>>
>....<<.....>><<<<<<<....<<....>>....>>>>>>>......
.............
aacgugucgcgauggaugacuuggcuuccuauuucguugaagaacgcagu
aaagugcgauaagugguaucaauugcagaaucauucaauuaccgaaucuu
ugaacgcaaacggcgcaugggagaagcucgugucauccccgugcaugcca
uacucagugucga
.........................................<<<<<<.((
.....>>>.....<<<<<......)).............>>>>.>...>>
>....<<.....>><<<<<<<....<<....>>....>>>>>>>......
.............
aacgugucgcgauggaugacuuggcuuccuauuucguugaagaacgcagu
aaagugcgauaagugguaucaauugcagaaucauucaauuaccgaaucuu
ugaacgcaaacggcgcaugggagaagcucgugucauccccgugcaugcca
uacucagugucga
.........................................<<<<<<.((
.....>>>.....<<<<<......)).............>>>>.>...>>
>....<<.....>><<<<<<<....<<....>>....>>>>>>>......
.............
aacgugucgcgauggaugacuuggcuuccuauuucguugaagaacgcagu
aaagugcgauaagugguaucaauugcagaaucauucaauuaccgaaucuu
ugaacgcaaacggcgcaugggagaagcucgugucauccccgugcaugcca
uacucagugucga
.........................................<<<<<<.((
.....>>>.....<<<<<......)).............>>>>.>...>>
>....<<.....>><<<<<<<....<<....>>....>>>>>>>......
.............
aacgugucgcgauggaugacuuggcuuccuauuucguugaagaacgcagu
aaagugcgauaagugguaucaauugcagaaucauucaauuaccgaaucuu
ugaacgcaaacggcgcaugggagaagcucgugucauccccgugcaugcca
uacucagugucga
.........................................<<<<<<.((
.....>>>.....<<<<<......)).............>>>>.>...>>
>....<<.....>><<<<<<<....<<....>>....>>>>>>>......
.............
aacgugucgcgauggaugacuuggcuuccuauuucguugaagaacgcagu
aaagugcgauaagugguaucaauugcagaaucauucaauuaccgaaucuu
ugaacgcaaacggcgcaugggagaagcucgugucauccccgugcaugcca
uacucagugucga
.........................................<<<<<<.((
.....>>>.....<<<<<......)).............>>>>.>...>>
>....<<.....>><<<<<<<....<<....>>....>>>>>>>......
.............
aacgugucgcgauggaugacuuggcuuccuauuucguugaagaacgcagu
aaagugcgauaagugguaucaauugcagaaucauucaauuaccgaaucuu
ugaacgcaaacggcgcaugggagaagcucgugucauccccgugcaugcca
uacucagugucga
.........................................<<<<<<.((
.....>>>.....<<<<<......)).............>>>>.>...>>
>....<<.....>><<<<<<<....<<....>>....>>>>>>>......
.............
aacgugucgcgauggaugacuuggcuuccuauuucguugaagaacgcagu
aaagugcgauaagugguaucaauugcagaaucauucaauuaccgaaucuu
ugaacgcaaacggcgcaugggagaagcucgugucauccccgugcaugcca
uacucagugucga
.........................................<<<<<<.((
.....>>>.....<<<<<......)).............>>>>.>...>>
>....<<.....>><<<<<<<....<<....>>....>>>>>>>......
.............
aacgugucgcgauggaugacuuggcuuccuauuucguugaagaacgcagu
aaagugcgauaagugguaucaauugcagaaucauucaauuaccgaaucuu
ugaacgcaaacggcgcaugggagaagcucgugucauccccgugcaugcca
uacucagugucga
.........................................<<<<<<.((
.....>>>.....<<<<<......)).............>>>>.>...>>
>....<<.....>><<<<<<<....<<....>>....>>>>>>>......
.............
aacgugucgcgauggaugacuuggcuuccuauuucguugaagaacgcagu
aaagugcgauaagugguaucaauugcagaaucauucaauuaccgaaucuu
ugaacgcaaacggcgcaugggagaagcucgugucauccccgugcaugcca
uacucagugucga
.........................................<<<<<<.((
.....>>>.....<<<<<......)).............>>>>.>...>>
>....<<.....>><<<<<<<....<<....>>....>>>>>>>......
.............

#	PDB (resolution)	Site #	RNA sequence	EC number	GO terms	UniProt	PubMed
1	6az3:C (2.5)	BS03	>6az3:7 aacgugucgcgauggaugacuuggcuuccuauuucguugaagaacgcagu aaagugcgauaagugguaucaauugcagaaucauucaauuaccgaaucuu ugaacgcaaacggcgcaugggagaagcucgugucauccccgugcaugcca uacucagugucga .........................................<<<<<<.(( .....>>>.....<<<<<......)).............>>>>.>...>> >....<<.....>><<<<<<<....<<....>>....>>>>>>>...... .............	?	GO:0003723 ...	A0A3S5H7L0	29150609
2	6az3:G (2.5)	BS03	>6az3:7 aacgugucgcgauggaugacuuggcuuccuauuucguugaagaacgcagu aaagugcgauaagugguaucaauugcagaaucauucaauuaccgaaucuu ugaacgcaaacggcgcaugggagaagcucgugucauccccgugcaugcca uacucagugucga .........................................<<<<<<.(( .....>>>.....<<<<<......)).............>>>>.>...>> >....<<.....>><<<<<<<....<<....>>....>>>>>>>...... .............	?	GO:0000470 ...	E9B949	29150609
3	6az3:I (2.5)	BS03	>6az3:7 aacgugucgcgauggaugacuuggcuuccuauuucguugaagaacgcagu aaagugcgauaagugguaucaauugcagaaucauucaauuaccgaaucuu ugaacgcaaacggcgcaugggagaagcucgugucauccccgugcaugcca uacucagugucga .........................................<<<<<<.(( .....>>>.....<<<<<......)).............>>>>.>...>> >....<<.....>><<<<<<<....<<....>>....>>>>>>>...... .............	N/A	GO:0003735 ...	N/A	29150609
4	6az3:M (2.5)	BS03	>6az3:7 aacgugucgcgauggaugacuuggcuuccuauuucguugaagaacgcagu aaagugcgauaagugguaucaauugcagaaucauucaauuaccgaaucuu ugaacgcaaacggcgcaugggagaagcucgugucauccccgugcaugcca uacucagugucga .........................................<<<<<<.(( .....>>>.....<<<<<......)).............>>>>.>...>> >....<<.....>><<<<<<<....<<....>>....>>>>>>>...... .............	?	GO:0002181 ...	E9BMB4	29150609
5	6az3:T (2.5)	BS05	>6az3:7 aacgugucgcgauggaugacuuggcuuccuauuucguugaagaacgcagu aaagugcgauaagugguaucaauugcagaaucauucaauuaccgaaucuu ugaacgcaaacggcgcaugggagaagcucgugucauccccgugcaugcca uacucagugucga .........................................<<<<<<.(( .....>>>.....<<<<<......)).............>>>>.>...>> >....<<.....>><<<<<<<....<<....>>....>>>>>>>...... .............	?	GO:0002181 ...	A0A3S7WY02	29150609
6	6az3:V (2.5)	BS03	>6az3:7 aacgugucgcgauggaugacuuggcuuccuauuucguugaagaacgcagu aaagugcgauaagugguaucaauugcagaaucauucaauuaccgaaucuu ugaacgcaaacggcgcaugggagaagcucgugucauccccgugcaugcca uacucagugucga .........................................<<<<<<.(( .....>>>.....<<<<<......)).............>>>>.>...>> >....<<.....>><<<<<<<....<<....>>....>>>>>>>...... .............	?	GO:0003735 ...	E9B8R9	29150609
7	6az3:W (2.5)	BS02	>6az3:7 aacgugucgcgauggaugacuuggcuuccuauuucguugaagaacgcagu aaagugcgauaagugguaucaauugcagaaucauucaauuaccgaaucuu ugaacgcaaacggcgcaugggagaagcucgugucauccccgugcaugcca uacucagugucga .........................................<<<<<<.(( .....>>>.....<<<<<......)).............>>>>.>...>> >....<<.....>><<<<<<<....<<....>>....>>>>>>>...... .............	N/A	GO:0003723 ...	N/A	29150609
8	6az3:a (2.5)	BS02	>6az3:7 aacgugucgcgauggaugacuuggcuuccuauuucguugaagaacgcagu aaagugcgauaagugguaucaauugcagaaucauucaauuaccgaaucuu ugaacgcaaacggcgcaugggagaagcucgugucauccccgugcaugcca uacucagugucga .........................................<<<<<<.(( .....>>>.....<<<<<......)).............>>>>.>...>> >....<<.....>><<<<<<<....<<....>>....>>>>>>>...... .............	?	GO:0000463 ...	E9BIP6	29150609
9	6az3:j (2.5)	BS03	>6az3:7 aacgugucgcgauggaugacuuggcuuccuauuucguugaagaacgcagu aaagugcgauaagugguaucaauugcagaaucauucaauuaccgaaucuu ugaacgcaaacggcgcaugggagaagcucgugucauccccgugcaugcca uacucagugucga .........................................<<<<<<.(( .....>>>.....<<<<<......)).............>>>>.>...>> >....<<.....>><<<<<<<....<<....>>....>>>>>>>...... .............	?	GO:0003723 ...	P62885	29150609
10	6az3:l (2.5)	BS03	>6az3:7 aacgugucgcgauggaugacuuggcuuccuauuucguugaagaacgcagu aaagugcgauaagugguaucaauugcagaaucauucaauuaccgaaucuu ugaacgcaaacggcgcaugggagaagcucgugucauccccgugcaugcca uacucagugucga .........................................<<<<<<.(( .....>>>.....<<<<<......)).............>>>>.>...>> >....<<.....>><<<<<<<....<<....>>....>>>>>>>...... .............	?	GO:0003735 ...	E9BCX6	29150609