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BioLiP
Download all results in tab-seperated text for 1 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		RNA
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    1 7ss9:N
    (3.9)    		 BS02 >7ss9:6 (identical to 8a3l:W, 6b4v:D, 6b4v:IA, 6b4v:HB, 6b4v:MC, 9bdl:ETRN, 9bdl:PTRN, 9bdn:ETRN, 9bdn:PTRN, 9bdp:ETRN, 9bdp:PTRN, 8bf7:4, 8bge:4, 8bgh:4, 8bhj:4, 8bhl:4, 8bhn:4, 8bhp:4, 8bil:4, 8bim:4, 6boh:D, 6boh:IA, 6boh:IB, 6boh:NC, 6bok:D, 6bok:IA, 6bok:GB, 6bok:LC, 6bu8:X, 6bu8:W, 6buw:QV, 6buw:XV, 6bz6:QV, 6bz6:XV, 6bz7:QV, 6bz7:XV, 6bz8:QV, 6bz8:QW, 6bz8:XV, 6bz8:XW, 6c4i:x, 6c4i:y, 8cvj:1x, 8cvj:2x, 8cvk:1x, 8cvk:2x, 8cvl:1x, 8cvl:2x, 5czp:QV, 5czp:XV, 5d8b:XC, 5d8b:BD, 5d8b:ED, 5d8b:FD, 5dfe:QV, 5dfe:XV, 6dnc:D, 6dnc:LA, 5el4:2K, 8g29:1x, 8g29:2x, 8g2a:1x, 8g2a:2x, 8g2c:1x, 8g2c:2x, 6gsj:2K, 6gsj:2L, 6gsk:2K, 6gsk:2L, 6gwt:x, 6gxm:x, 6gxn:x, 6i7o:mb, 5imq:4, 5imr:4, 3j0p:W, 3j0q:W, 5j30:QV, 5j30:XV, 5j3c:QV, 5j3c:XV, 5j4d:D, 5j4d:IA, 5j4d:IB, 5j4d:NC, 3j5s:E, 3j77:PT, 3j78:ET, 5j8b:x, 3jce:8, 7jss:5, 7jsw:5, 7jsz:5, 7jt1:5, 7jt2:5, 7k50:5, 7k50:6, 7k53:5, 7k53:6, 7k54:6, 7k55:6, 7kgb:y, 5kps:31, 5kpv:31, 5kpw:31, 5kpx:31, 4l47:QV, 4l47:XV, 4l71:QV, 4l71:XV, 4lel:QV, 4lel:XV, 4lfz:QV, 4lfz:XV, 5lmq:Z, 5lmr:Z, 5lms:Z, 5lmt:Z, 5lmu:Z, 5lmv:Z, 4lnt:QV, 4lnt:XV, 4lsk:QV, 4lsk:XV, 4lt8:QV, 4lt8:XV, 7lv0:6, 7msc:y, 7msm:y, 7msz:y, 7mt2:y, 7mt7:x, 7mt7:y, 6ndk:QV, 6ndk:XV, 7nrd:Sm, 6of6:QV, 6of6:XV, 6ofx:5, 6oj2:QV, 6oj2:XV, 6ope:QV, 6ope:XV, 6ord:QV, 6ord:XV, 6otr:QV, 6otr:QW, 6otr:XV, 6otr:XW, 6oxa:QV, 6oxa:QW, 6oxa:XV, 6oxa:XW, 6oxi:QV, 6oxi:XV, 8p2f:D, 8p2g:D, 8p2h:D, 4p6f:QV, 4p6f:XV, 4p70:QV, 4p70:XV, 6q95:7, 6qnq:3K, 6qnq:2L, 6qnq:3L, 7sa4:5, 7sa4:6, 7ssl:6, 7ssn:6, 7sso:6, 7ssw:6, 7st2:6, 7st6:7, 7st6:6, 7st7:6, 6sv4:mb, 6sv4:mc, 8t5d:5, 8t5h:5, 7too:APTN, 7top:APTN, 7toq:PTRN, 7tor:ETRN, 4tua:QV, 4tua:XV, 4tub:QV, 4tub:XV, 4tuc:QV, 4tuc:XV, 4tud:QV, 4tud:XV, 4tue:QV, 4tue:XV, 7u2h:1x, 7u2h:2x, 7u2i:1x, 7u2i:2x, 7u2j:1x, 7u2j:2x, 5u4i:x, 5u4i:y, 5u9f:X, 5u9f:W, 5u9g:X, 5u9g:W, 5uyk:X, 5uyk:W, 5uyl:X, 5uyl:W, 5uym:X, 5uym:W, 5uyn:X, 5uyn:W, 5uyp:X, 5uyp:W, 5uyq:X, 5uyq:W, 4v5a:AW, 4v5a:CW, 4v5f:AV, 4v5f:AW, 4v5f:CV, 4v5f:CW, 4v5k:AV, 4v5k:AW, 4v5k:CV, 4v5k:CW, 4v5m:AV, 4v5n:AV, 4v63:AZ, 4v63:AY, 4v63:CZ, 4v63:CY, 4v67:AZ, 4v67:AY, 4v67:CZ, 4v67:CY, 4v68:AV, 4v69:AV, 4v6a:AW, 4v6a:CW, 4v6t:AX, 4v6y:A3, 4v6z:A3, 4v70:A3, 4v71:A3, 4v72:A3, 4v73:A3, 4v74:A3, 4v75:A3, 4v76:A3, 4v7j:Av, 4v7j:Aw, 4v7j:Bv, 4v7j:Bw, 4v7k:Av, 4v7k:Aw, 4v7k:Bv, 4v7k:Bw, 4v7l:AX, 4v7l:CX, 4v7m:CX, 4v7p:AW, 4v7p:DW, 4v8j:AV, 4v8j:CV, 4v8o:AV, 4v8q:BV, 4v8q:BW, 4v8u:AW, 4v8u:CW, 4v8x:AV, 4v8x:AW, 4v8x:CV, 4v8x:CW, 4v95:AV, 4v95:CV, 4v97:AV, 4v97:CV, 4v9i:AV, 4v9i:CV, 4v9n:AW, 4v9n:CW, 4v9q:BV, 4v9q:BW, 4v9q:DV, 4v9q:DW, 8vs9:ETRN, 8vtu:1x, 8vtu:2x, 8vtv:1x, 8vtv:2x, 8vtx:1x, 8vtx:2x, 1vvj:QV, 1vvj:XV, 4w4g:QV, 4w4g:QW, 4w4g:XV, 4w4g:XW, 6wd0:5, 6wd0:6, 6wd1:5, 6wd2:5, 6wd2:6, 6wd3:5, 6wd3:6, 6wd4:5, 6wd4:6, 6wd5:5, 6wd5:6, 6wd6:5, 6wd6:6, 6wd7:5, 6wd7:6, 6wd8:5, 6wd8:6, 6wd9:5, 6wd9:6, 6wda:5, 6wda:6, 6wdb:5, 6wdb:6, 6wdc:5, 6wdc:6, 6wdd:5, 6wdd:6, 6wde:5, 6wde:6, 6wdf:5, 6wdg:5, 6wdh:5, 6wdh:6, 6wdi:5, 6wdi:6, 6wdj:5, 6wdj:6, 6wdk:5, 6wdk:6, 6wdl:5, 6wdl:6, 6wdm:5, 6wdm:6, 6wnw:5, 4wt8:C4, 6yef:x, 4ypb:QV, 4ypb:QW, 4ypb:XV, 4ypb:XW, 4yzv:QV, 4yzv:XV, 4zsn:QV, 4zsn:XV, 7zux:7)
    cgcgggguggagcagccugguagcucgucgggcucauaacccgaaggucg
ucgguucaaauccggcccccgcaacca
.<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<
<<<<.......>>>>>>>>>>>.....
    		 ? GO:0000049 ... P0A7X3 34903725
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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