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BioLiP
Download all results in tab-seperated text for 2 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		RNA
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    1 3jce:M
    (3.2)    		 BS03 >3jce:6 (identical to 5aa0:BC, 7abz:7, 7ac7:7, 5aj0:Bv, 5aj0:Bw, 8akn:X, 7azo:ASIA, 7azo:PSIA, 7azo:ESIA, 7azo:ASIB, 7azo:PSIB, 7azo:ESIB, 7azs:ASIA, 7azs:PSIA, 7azs:ESIA, 7azs:ASIB, 7azs:PSIB, 7azs:ESIB, 6bu8:Y, 6c5l:AV, 6c5l:CV, 8cd1:Dt, 8fzd:x, 8fze:x, 8fzg:x, 8fzh:x, 8g5z:At, 8g60:At, 8g61:At, 8g6j:At, 8hky:AATN, 8hky:AETN, 8hkz:AETN, 8hl1:APTN, 8hl1:AETN, 8hl2:APTN, 8hl2:AETN, 8hl3:APTN, 8hl4:APTN, 8hl5:AATN, 8hl5:APTN, 8ifb:5, 8ifc:5, 5imq:5, 5imr:5, 5iqr:4, 3j0l:W, 3j0o:W, 3jcd:8, 3jcd:9, 3jce:9, 5kpv:30, 5kpw:30, 5kpx:30, 7lh5:AW, 7lh5:CW, 7mdz:2, 5mmm:z, 7n1p:Dt, 7n31:Dt, 5ndj:W1, 5ndj:X1, 5ndj:V1, 5ndj:W4, 5ndj:X4, 5ndj:V4, 5ndk:W1, 5ndk:X1, 5ndk:V1, 5ndk:W4, 5ndk:X4, 5ndk:V4, 5o61:BW, 6o9j:v, 6olg:Bv, 6olz:Bv, 5ot7:2, 4p6f:QW, 4p6f:XW, 6qnr:1K, 6qnr:2K, 6qnr:3K, 6qnr:1L, 6qnr:2L, 6qnr:3L, 7qvp:B4, 5tcu:D, 7ug7:Pt, 4ujc:AA, 4ujd:BA, 4uje:AV, 4uje:AW, 5uq7:z, 5uq8:z, 5uyk:Y, 5uyl:Y, 5uym:Y, 4v4i:z, 4v4y:AC, 4v4y:AD, 4v51:AW, 4v51:CW, 4v5c:AW, 4v5c:CW, 4v5d:AW, 4v5d:CW, 4v5e:AV, 4v5e:AW, 4v5e:CV, 4v5e:CW, 4v5g:AV, 4v5g:AW, 4v5g:CV, 4v5g:CW, 4v5l:AV, 4v5l:AW, 4v5p:AV, 4v5p:AW, 4v5p:CV, 4v5p:CW, 4v5q:AV, 4v5q:AW, 4v5q:CV, 4v5q:CW, 4v5r:AV, 4v5r:AW, 4v5r:CV, 4v5r:CW, 4v5s:AV, 4v5s:AW, 4v5s:CV, 4v5s:CW, 4v68:AW, 4v69:AW, 4v6f:BD, 4v6f:BB, 4v6f:BC, 4v6f:CD, 4v6f:CB, 4v6f:CC, 4v6k:BB, 4v6l:AB, 4v6l:AE, 4v7c:AV, 4v8j:AW, 4v8j:CW, 4v8u:AV, 4v8u:CV, 4v97:AW, 4v97:CW, 4v9c:AV, 4v9c:CV, 4v9d:AV, 4v9d:BV, 4v9i:AW, 4v9i:CW, 6vwn:5, 4w2e:w, 5wdt:y, 6wd2:7, 6wd3:7, 6wd4:7, 6wd5:7, 6wd6:7, 6wd8:7, 6wd9:7, 6wda:7, 6wdd:7, 6wde:7, 6wdj:7, 6wdl:7, 6wdm:7, 5we4:y, 5we6:y, 5wf0:y, 5wfk:y, 5wfs:y, 4woi:AX, 4woi:DW, 4wqf:BW, 4wqf:DW, 4wqr:1K, 4wqr:3K, 4wqr:1L, 4wqr:3L, 4wqu:BW, 4wro:3K, 4wsd:1K, 4wsd:3L, 4wt1:1K, 4wt1:3K, 4wt1:1L, 4wt1:3L, 4wt8:C3, 4wt8:D3, 4wzo:3K, 4wzo:3L, 6y0g:B4, 6y2l:B4, 6y4b:F, 6ztj:AX, 6ztm:AX, 6ztn:AX, 6ztn:AZ)
    gcccggauagcucagucgguagagcaggggauugaaaauccccguguccu
ugguucgauuccgaguccgggcacca
<<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<
<<<.......>>>>>>>>>>>>....
    		 ? GO:0000027 ... P0ADY7 26809121
    2 3jce:x
    (3.2)    		 BS02 >3jce:6 (identical to 5aa0:BC, 7abz:7, 7ac7:7, 5aj0:Bv, 5aj0:Bw, 8akn:X, 7azo:ASIA, 7azo:PSIA, 7azo:ESIA, 7azo:ASIB, 7azo:PSIB, 7azo:ESIB, 7azs:ASIA, 7azs:PSIA, 7azs:ESIA, 7azs:ASIB, 7azs:PSIB, 7azs:ESIB, 6bu8:Y, 6c5l:AV, 6c5l:CV, 8cd1:Dt, 8fzd:x, 8fze:x, 8fzg:x, 8fzh:x, 8g5z:At, 8g60:At, 8g61:At, 8g6j:At, 8hky:AATN, 8hky:AETN, 8hkz:AETN, 8hl1:APTN, 8hl1:AETN, 8hl2:APTN, 8hl2:AETN, 8hl3:APTN, 8hl4:APTN, 8hl5:AATN, 8hl5:APTN, 8ifb:5, 8ifc:5, 5imq:5, 5imr:5, 5iqr:4, 3j0l:W, 3j0o:W, 3jcd:8, 3jcd:9, 3jce:9, 5kpv:30, 5kpw:30, 5kpx:30, 7lh5:AW, 7lh5:CW, 7mdz:2, 5mmm:z, 7n1p:Dt, 7n31:Dt, 5ndj:W1, 5ndj:X1, 5ndj:V1, 5ndj:W4, 5ndj:X4, 5ndj:V4, 5ndk:W1, 5ndk:X1, 5ndk:V1, 5ndk:W4, 5ndk:X4, 5ndk:V4, 5o61:BW, 6o9j:v, 6olg:Bv, 6olz:Bv, 5ot7:2, 4p6f:QW, 4p6f:XW, 6qnr:1K, 6qnr:2K, 6qnr:3K, 6qnr:1L, 6qnr:2L, 6qnr:3L, 7qvp:B4, 5tcu:D, 7ug7:Pt, 4ujc:AA, 4ujd:BA, 4uje:AV, 4uje:AW, 5uq7:z, 5uq8:z, 5uyk:Y, 5uyl:Y, 5uym:Y, 4v4i:z, 4v4y:AC, 4v4y:AD, 4v51:AW, 4v51:CW, 4v5c:AW, 4v5c:CW, 4v5d:AW, 4v5d:CW, 4v5e:AV, 4v5e:AW, 4v5e:CV, 4v5e:CW, 4v5g:AV, 4v5g:AW, 4v5g:CV, 4v5g:CW, 4v5l:AV, 4v5l:AW, 4v5p:AV, 4v5p:AW, 4v5p:CV, 4v5p:CW, 4v5q:AV, 4v5q:AW, 4v5q:CV, 4v5q:CW, 4v5r:AV, 4v5r:AW, 4v5r:CV, 4v5r:CW, 4v5s:AV, 4v5s:AW, 4v5s:CV, 4v5s:CW, 4v68:AW, 4v69:AW, 4v6f:BD, 4v6f:BB, 4v6f:BC, 4v6f:CD, 4v6f:CB, 4v6f:CC, 4v6k:BB, 4v6l:AB, 4v6l:AE, 4v7c:AV, 4v8j:AW, 4v8j:CW, 4v8u:AV, 4v8u:CV, 4v97:AW, 4v97:CW, 4v9c:AV, 4v9c:CV, 4v9d:AV, 4v9d:BV, 4v9i:AW, 4v9i:CW, 6vwn:5, 4w2e:w, 5wdt:y, 6wd2:7, 6wd3:7, 6wd4:7, 6wd5:7, 6wd6:7, 6wd8:7, 6wd9:7, 6wda:7, 6wdd:7, 6wde:7, 6wdj:7, 6wdl:7, 6wdm:7, 5we4:y, 5we6:y, 5wf0:y, 5wfk:y, 5wfs:y, 4woi:AX, 4woi:DW, 4wqf:BW, 4wqf:DW, 4wqr:1K, 4wqr:3K, 4wqr:1L, 4wqr:3L, 4wqu:BW, 4wro:3K, 4wsd:1K, 4wsd:3L, 4wt1:1K, 4wt1:3K, 4wt1:1L, 4wt1:3L, 4wt8:C3, 4wt8:D3, 4wzo:3K, 4wzo:3L, 6y0g:B4, 6y2l:B4, 6y4b:F, 6ztj:AX, 6ztm:AX, 6ztn:AX, 6ztn:AZ)
    gcccggauagcucagucgguagagcaggggauugaaaauccccguguccu
ugguucgauuccgaguccgggcacca
<<<<<<<..<<<<........>>>>.<<<<<<.....>>>>>>.....<<
<<<.......>>>>>>>>>>>>....
    		 3.6.5.n1 GO:0003746 ... P60785 26809121
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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