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BioLiP
Download all results in tab-seperated text for 11 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		RNA
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    1 8h6l:4F
    (2.6)    		 BS02 >8h6l:5A (identical to 6ah0:B, 6ahd:B, 8h6k:5A, 8q7n:5, 8qo9:5, 8qpe:5, 8r0a:5)
    acucugguuucucuucagaucgcauaaaucuuucgccuuuuacuaaagau
uuccguggagaggaacaacucugagucuuaacccaauuuuuugaggccuu
gcuuuggcaaggcua
.<<<..<<<<<<<<<<<........<<<<<<<<...........>>>>>>
>>...>>>>>>>>>>>......>>>...................<<<<<<
<<....>>>>>>>>.
    		 ? GO:0000245 ... P83876 38658629
    2 8h6l:4G
    (2.6)    		 BS01 >8h6l:5A (identical to 6ah0:B, 6ahd:B, 8h6k:5A, 8q7n:5, 8qo9:5, 8qpe:5, 8r0a:5)
    acucugguuucucuucagaucgcauaaaucuuucgccuuuuacuaaagau
uuccguggagaggaacaacucugagucuuaacccaauuuuuugaggccuu
gcuuuggcaaggcua
.<<<..<<<<<<<<<<<........<<<<<<<<...........>>>>>>
>>...>>>>>>>>>>>......>>>...................<<<<<<
<<....>>>>>>>>.
    		 ? GO:0000244 ... O94906 38658629
    3 8h6l:5B
    (2.6)    		 BS02 >8h6l:5A (identical to 6ah0:B, 6ahd:B, 8h6k:5A, 8q7n:5, 8qo9:5, 8qpe:5, 8r0a:5)
    acucugguuucucuucagaucgcauaaaucuuucgccuuuuacuaaagau
uuccguggagaggaacaacucugagucuuaacccaauuuuuugaggccuu
gcuuuggcaaggcua
.<<<..<<<<<<<<<<<........<<<<<<<<...........>>>>>>
>>...>>>>>>>>>>>......>>>...................<<<<<<
<<....>>>>>>>>.
    		 ? GO:0000244 ... Q6P2Q9 38658629
    4 8h6l:5E
    (2.6)    		 BS01 >8h6l:5A (identical to 6ah0:B, 6ahd:B, 8h6k:5A, 8q7n:5, 8qo9:5, 8qpe:5, 8r0a:5)
    acucugguuucucuucagaucgcauaaaucuuucgccuuuuacuaaagau
uuccguggagaggaacaacucugagucuuaacccaauuuuuugaggccuu
gcuuuggcaaggcua
.<<<..<<<<<<<<<<<........<<<<<<<<...........>>>>>>
>>...>>>>>>>>>>>......>>>...................<<<<<<
<<....>>>>>>>>.
    		 ? GO:0000375 ... Q96DI7 38658629
    5 8h6l:5a
    (2.6)    		 BS01 >8h6l:5A (identical to 6ah0:B, 6ahd:B, 8h6k:5A, 8q7n:5, 8qo9:5, 8qpe:5, 8r0a:5)
    acucugguuucucuucagaucgcauaaaucuuucgccuuuuacuaaagau
uuccguggagaggaacaacucugagucuuaacccaauuuuuugaggccuu
gcuuuggcaaggcua
.<<<..<<<<<<<<<<<........<<<<<<<<...........>>>>>>
>>...>>>>>>>>>>>......>>>...................<<<<<<
<<....>>>>>>>>.
    		 ? GO:0000387 ... P14678 38658629
    6 8h6l:5b
    (2.6)    		 BS01 >8h6l:5A (identical to 6ah0:B, 6ahd:B, 8h6k:5A, 8q7n:5, 8qo9:5, 8qpe:5, 8r0a:5)
    acucugguuucucuucagaucgcauaaaucuuucgccuuuuacuaaagau
uuccguggagaggaacaacucugagucuuaacccaauuuuuugaggccuu
gcuuuggcaaggcua
.<<<..<<<<<<<<<<<........<<<<<<<<...........>>>>>>
>>...>>>>>>>>>>>......>>>...................<<<<<<
<<....>>>>>>>>.
    		 ? GO:0000243 ... P62314 38658629
    7 8h6l:5c
    (2.6)    		 BS01 >8h6l:5A (identical to 6ah0:B, 6ahd:B, 8h6k:5A, 8q7n:5, 8qo9:5, 8qpe:5, 8r0a:5)
    acucugguuucucuucagaucgcauaaaucuuucgccuuuuacuaaagau
uuccguggagaggaacaacucugagucuuaacccaauuuuuugaggccuu
gcuuuggcaaggcua
.<<<..<<<<<<<<<<<........<<<<<<<<...........>>>>>>
>>...>>>>>>>>>>>......>>>...................<<<<<<
<<....>>>>>>>>.
    		 ? GO:0000245 ... P62316 38658629
    8 8h6l:5d
    (2.6)    		 BS01 >8h6l:5A (identical to 6ah0:B, 6ahd:B, 8h6k:5A, 8q7n:5, 8qo9:5, 8qpe:5, 8r0a:5)
    acucugguuucucuucagaucgcauaaaucuuucgccuuuuacuaaagau
uuccguggagaggaacaacucugagucuuaacccaauuuuuugaggccuu
gcuuuggcaaggcua
.<<<..<<<<<<<<<<<........<<<<<<<<...........>>>>>>
>>...>>>>>>>>>>>......>>>...................<<<<<<
<<....>>>>>>>>.
    		 ? GO:0000387 ... P62306 38658629
    9 8h6l:5e
    (2.6)    		 BS01 >8h6l:5A (identical to 6ah0:B, 6ahd:B, 8h6k:5A, 8q7n:5, 8qo9:5, 8qpe:5, 8r0a:5)
    acucugguuucucuucagaucgcauaaaucuuucgccuuuuacuaaagau
uuccguggagaggaacaacucugagucuuaacccaauuuuuugaggccuu
gcuuuggcaaggcua
.<<<..<<<<<<<<<<<........<<<<<<<<...........>>>>>>
>>...>>>>>>>>>>>......>>>...................<<<<<<
<<....>>>>>>>>.
    		 ? GO:0000245 ... P62304 38658629
    10 8h6l:5f
    (2.6)    		 BS01 >8h6l:5A (identical to 6ah0:B, 6ahd:B, 8h6k:5A, 8q7n:5, 8qo9:5, 8qpe:5, 8r0a:5)
    acucugguuucucuucagaucgcauaaaucuuucgccuuuuacuaaagau
uuccguggagaggaacaacucugagucuuaacccaauuuuuugaggccuu
gcuuuggcaaggcua
.<<<..<<<<<<<<<<<........<<<<<<<<...........>>>>>>
>>...>>>>>>>>>>>......>>>...................<<<<<<
<<....>>>>>>>>.
    		 ? GO:0000245 ... P62308 38658629
    11 8h6l:5g
    (2.6)    		 BS01 >8h6l:5A (identical to 6ah0:B, 6ahd:B, 8h6k:5A, 8q7n:5, 8qo9:5, 8qpe:5, 8r0a:5)
    acucugguuucucuucagaucgcauaaaucuuucgccuuuuacuaaagau
uuccguggagaggaacaacucugagucuuaacccaauuuuuugaggccuu
gcuuuggcaaggcua
.<<<..<<<<<<<<<<<........<<<<<<<<...........>>>>>>
>>...>>>>>>>>>>>......>>>...................<<<<<<
<<....>>>>>>>>.
    		 ? GO:0000243 ... P62318 38658629
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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