BioLiP

Download all results in tab-seperated text for 14 receptor-ligand interactions, whose format is explained at readme.txt.

Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.

Click Site # to view the binding site structure. Hover over Site # to view the binding residues.

The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.

Hover over EC number to view the full name of enzymatic activity.

Hover over GO terms to view all GO terms.

Hover over UniProt to view the protein name.

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ugcgaaagcaguugaagacaaguggcuugucguucguuaauggccucguc
cagcgaaggauuugguggauuacuagcuaauagcaaucuaggaaacucaa
agagugcuaugguauggugacggagugcgcugugaacagagagcauuucc
ggcagcagagauuucagcugu
<<<....>>>...<<<<<<<<<<.>>>>>>>.>>>...............
.........................<<<...>>>................
....................<<<<.<<<.<<......>>...>>>..>>>
><<<<<.<<<..>>>.>>>>>
ugcgaaagcaguugaagacaaguggcuugucguucguuaauggccucguc
cagcgaaggauuugguggauuacuagcuaauagcaaucuaggaaacucaa
agagugcuaugguauggugacggagugcgcugugaacagagagcauuucc
ggcagcagagauuucagcugu
<<<....>>>...<<<<<<<<<<.>>>>>>>.>>>...............
.........................<<<...>>>................
....................<<<<.<<<.<<......>>...>>>..>>>
><<<<<.<<<..>>>.>>>>>
ugcgaaagcaguugaagacaaguggcuugucguucguuaauggccucguc
cagcgaaggauuugguggauuacuagcuaauagcaaucuaggaaacucaa
agagugcuaugguauggugacggagugcgcugugaacagagagcauuucc
ggcagcagagauuucagcugu
<<<....>>>...<<<<<<<<<<.>>>>>>>.>>>...............
.........................<<<...>>>................
....................<<<<.<<<.<<......>>...>>>..>>>
><<<<<.<<<..>>>.>>>>>
ugcgaaagcaguugaagacaaguggcuugucguucguuaauggccucguc
cagcgaaggauuugguggauuacuagcuaauagcaaucuaggaaacucaa
agagugcuaugguauggugacggagugcgcugugaacagagagcauuucc
ggcagcagagauuucagcugu
<<<....>>>...<<<<<<<<<<.>>>>>>>.>>>...............
.........................<<<...>>>................
....................<<<<.<<<.<<......>>...>>>..>>>
><<<<<.<<<..>>>.>>>>>
ugcgaaagcaguugaagacaaguggcuugucguucguuaauggccucguc
cagcgaaggauuugguggauuacuagcuaauagcaaucuaggaaacucaa
agagugcuaugguauggugacggagugcgcugugaacagagagcauuucc
ggcagcagagauuucagcugu
<<<....>>>...<<<<<<<<<<.>>>>>>>.>>>...............
.........................<<<...>>>................
....................<<<<.<<<.<<......>>...>>>..>>>
><<<<<.<<<..>>>.>>>>>
ugcgaaagcaguugaagacaaguggcuugucguucguuaauggccucguc
cagcgaaggauuugguggauuacuagcuaauagcaaucuaggaaacucaa
agagugcuaugguauggugacggagugcgcugugaacagagagcauuucc
ggcagcagagauuucagcugu
<<<....>>>...<<<<<<<<<<.>>>>>>>.>>>...............
.........................<<<...>>>................
....................<<<<.<<<.<<......>>...>>>..>>>
><<<<<.<<<..>>>.>>>>>
ugcgaaagcaguugaagacaaguggcuugucguucguuaauggccucguc
cagcgaaggauuugguggauuacuagcuaauagcaaucuaggaaacucaa
agagugcuaugguauggugacggagugcgcugugaacagagagcauuucc
ggcagcagagauuucagcugu
<<<....>>>...<<<<<<<<<<.>>>>>>>.>>>...............
.........................<<<...>>>................
....................<<<<.<<<.<<......>>...>>>..>>>
><<<<<.<<<..>>>.>>>>>
ugcgaaagcaguugaagacaaguggcuugucguucguuaauggccucguc
cagcgaaggauuugguggauuacuagcuaauagcaaucuaggaaacucaa
agagugcuaugguauggugacggagugcgcugugaacagagagcauuucc
ggcagcagagauuucagcugu
<<<....>>>...<<<<<<<<<<.>>>>>>>.>>>...............
.........................<<<...>>>................
....................<<<<.<<<.<<......>>...>>>..>>>
><<<<<.<<<..>>>.>>>>>
ugcgaaagcaguugaagacaaguggcuugucguucguuaauggccucguc
cagcgaaggauuugguggauuacuagcuaauagcaaucuaggaaacucaa
agagugcuaugguauggugacggagugcgcugugaacagagagcauuucc
ggcagcagagauuucagcugu
<<<....>>>...<<<<<<<<<<.>>>>>>>.>>>...............
.........................<<<...>>>................
....................<<<<.<<<.<<......>>...>>>..>>>
><<<<<.<<<..>>>.>>>>>
ugcgaaagcaguugaagacaaguggcuugucguucguuaauggccucguc
cagcgaaggauuugguggauuacuagcuaauagcaaucuaggaaacucaa
agagugcuaugguauggugacggagugcgcugugaacagagagcauuucc
ggcagcagagauuucagcugu
<<<....>>>...<<<<<<<<<<.>>>>>>>.>>>...............
.........................<<<...>>>................
....................<<<<.<<<.<<......>>...>>>..>>>
><<<<<.<<<..>>>.>>>>>
ugcgaaagcaguugaagacaaguggcuugucguucguuaauggccucguc
cagcgaaggauuugguggauuacuagcuaauagcaaucuaggaaacucaa
agagugcuaugguauggugacggagugcgcugugaacagagagcauuucc
ggcagcagagauuucagcugu
<<<....>>>...<<<<<<<<<<.>>>>>>>.>>>...............
.........................<<<...>>>................
....................<<<<.<<<.<<......>>...>>>..>>>
><<<<<.<<<..>>>.>>>>>
ugcgaaagcaguugaagacaaguggcuugucguucguuaauggccucguc
cagcgaaggauuugguggauuacuagcuaauagcaaucuaggaaacucaa
agagugcuaugguauggugacggagugcgcugugaacagagagcauuucc
ggcagcagagauuucagcugu
<<<....>>>...<<<<<<<<<<.>>>>>>>.>>>...............
.........................<<<...>>>................
....................<<<<.<<<.<<......>>...>>>..>>>
><<<<<.<<<..>>>.>>>>>
ugcgaaagcaguugaagacaaguggcuugucguucguuaauggccucguc
cagcgaaggauuugguggauuacuagcuaauagcaaucuaggaaacucaa
agagugcuaugguauggugacggagugcgcugugaacagagagcauuucc
ggcagcagagauuucagcugu
<<<....>>>...<<<<<<<<<<.>>>>>>>.>>>...............
.........................<<<...>>>................
....................<<<<.<<<.<<......>>...>>>..>>>
><<<<<.<<<..>>>.>>>>>
ugcgaaagcaguugaagacaaguggcuugucguucguuaauggccucguc
cagcgaaggauuugguggauuacuagcuaauagcaaucuaggaaacucaa
agagugcuaugguauggugacggagugcgcugugaacagagagcauuucc
ggcagcagagauuucagcugu
<<<....>>>...<<<<<<<<<<.>>>>>>>.>>>...............
.........................<<<...>>>................
....................<<<<.<<<.<<......>>...>>>..>>>
><<<<<.<<<..>>>.>>>>>

#	PDB (resolution)	Site #	RNA sequence	EC number	GO terms	UniProt	PubMed
1	6lqv:3D (4.8)	BS02	>6lqv:5A ugcgaaagcaguugaagacaaguggcuugucguucguuaauggccucguc cagcgaaggauuugguggauuacuagcuaauagcaaucuaggaaacucaa agagugcuaugguauggugacggagugcgcugugaacagagagcauuucc ggcagcagagauuucagcugu <<<....>>>...<<<<<<<<<<.>>>>>>>.>>>............... .........................<<<...>>>................ ....................<<<<.<<<.<<......>>...>>>..>>> ><<<<<.<<<..>>>.>>>>>	?	GO:0000154 ...	Q12460	32943522
2	6lqv:3E (4.8)	BS02	>6lqv:5A ugcgaaagcaguugaagacaaguggcuugucguucguuaauggccucguc cagcgaaggauuugguggauuacuagcuaauagcaaucuaggaaacucaa agagugcuaugguauggugacggagugcgcugugaacagagagcauuucc ggcagcagagauuucagcugu <<<....>>>...<<<<<<<<<<.>>>>>>>.>>>............... .........................<<<...>>>................ ....................<<<<.<<<.<<......>>...>>>..>>> ><<<<<.<<<..>>>.>>>>>	?	GO:0000447 ...	Q12499	32943522
3	6lqv:5C (4.8)	BS02	>6lqv:5A ugcgaaagcaguugaagacaaguggcuugucguucguuaauggccucguc cagcgaaggauuugguggauuacuagcuaauagcaaucuaggaaacucaa agagugcuaugguauggugacggagugcgcugugaacagagagcauuucc ggcagcagagauuucagcugu <<<....>>>...<<<<<<<<<<.>>>>>>>.>>>............... .........................<<<...>>>................ ....................<<<<.<<<.<<......>>...>>>..>>> ><<<<<.<<<..>>>.>>>>>	?	GO:0000447 ...	P40055	32943522
4	6lqv:5I (4.8)	BS02	>6lqv:5A ugcgaaagcaguugaagacaaguggcuugucguucguuaauggccucguc cagcgaaggauuugguggauuacuagcuaauagcaaucuaggaaacucaa agagugcuaugguauggugacggagugcgcugugaacagagagcauuucc ggcagcagagauuucagcugu <<<....>>>...<<<<<<<<<<.>>>>>>>.>>>............... .........................<<<...>>>................ ....................<<<<.<<<.<<......>>...>>>..>>> ><<<<<.<<<..>>>.>>>>>	?	GO:0000462 ...	P33750	32943522
5	6lqv:A4 (4.8)	BS01	>6lqv:5A ugcgaaagcaguugaagacaaguggcuugucguucguuaauggccucguc cagcgaaggauuugguggauuacuagcuaauagcaaucuaggaaacucaa agagugcuaugguauggugacggagugcgcugugaacagagagcauuucc ggcagcagagauuucagcugu <<<....>>>...<<<<<<<<<<.>>>>>>>.>>>............... .........................<<<...>>>................ ....................<<<<.<<<.<<......>>...>>>..>>> ><<<<<.<<<..>>>.>>>>>	?	GO:0000462 ...	Q06679	32943522
6	6lqv:A9 (4.8)	BS01	>6lqv:5A ugcgaaagcaguugaagacaaguggcuugucguucguuaauggccucguc cagcgaaggauuugguggauuacuagcuaauagcaaucuaggaaacucaa agagugcuaugguauggugacggagugcgcugugaacagagagcauuucc ggcagcagagauuucagcugu <<<....>>>...<<<<<<<<<<.>>>>>>>.>>>............... .........................<<<...>>>................ ....................<<<<.<<<.<<......>>...>>>..>>> ><<<<<.<<<..>>>.>>>>>	?	GO:0000049 ...	P38882	32943522
7	6lqv:AE (4.8)	BS02	>6lqv:5A ugcgaaagcaguugaagacaaguggcuugucguucguuaauggccucguc cagcgaaggauuugguggauuacuagcuaauagcaaucuaggaaacucaa agagugcuaugguauggugacggagugcgcugugaacagagagcauuucc ggcagcagagauuucagcugu <<<....>>>...<<<<<<<<<<.>>>>>>>.>>>............... .........................<<<...>>>................ ....................<<<<.<<<.<<......>>...>>>..>>> ><<<<<.<<<..>>>.>>>>>	?	GO:0000447 ...	P42945	32943522
8	6lqv:AF (4.8)	BS01	>6lqv:5A ugcgaaagcaguugaagacaaguggcuugucguucguuaauggccucguc cagcgaaggauuugguggauuacuagcuaauagcaaucuaggaaacucaa agagugcuaugguauggugacggagugcgcugugaacagagagcauuucc ggcagcagagauuucagcugu <<<....>>>...<<<<<<<<<<.>>>>>>>.>>>............... .........................<<<...>>>................ ....................<<<<.<<<.<<......>>...>>>..>>> ><<<<<.<<<..>>>.>>>>>	?	GO:0000462 ...	Q04305	32943522
9	6lqv:AG (4.8)	BS02	>6lqv:5A ugcgaaagcaguugaagacaaguggcuugucguucguuaauggccucguc cagcgaaggauuugguggauuacuagcuaauagcaaucuaggaaacucaa agagugcuaugguauggugacggagugcgcugugaacagagagcauuucc ggcagcagagauuucagcugu <<<....>>>...<<<<<<<<<<.>>>>>>>.>>>............... .........................<<<...>>>................ ....................<<<<.<<<.<<......>>...>>>..>>> ><<<<<.<<<..>>>.>>>>>	?	GO:0000462 ...	Q02931	32943522
10	6lqv:B1 (4.8)	BS02	>6lqv:5A ugcgaaagcaguugaagacaaguggcuugucguucguuaauggccucguc cagcgaaggauuugguggauuacuagcuaauagcaaucuaggaaacucaa agagugcuaugguauggugacggagugcgcugugaacagagagcauuucc ggcagcagagauuucagcugu <<<....>>>...<<<<<<<<<<.>>>>>>>.>>>............... .........................<<<...>>>................ ....................<<<<.<<<.<<......>>...>>>..>>> ><<<<<.<<<..>>>.>>>>>	?	GO:0000028 ...	P25635	32943522
11	6lqv:B6 (4.8)	BS01	>6lqv:5A ugcgaaagcaguugaagacaaguggcuugucguucguuaauggccucguc cagcgaaggauuugguggauuacuagcuaauagcaaucuaggaaacucaa agagugcuaugguauggugacggagugcgcugugaacagagagcauuucc ggcagcagagauuucagcugu <<<....>>>...<<<<<<<<<<.>>>>>>>.>>>............... .........................<<<...>>>................ ....................<<<<.<<<.<<......>>...>>>..>>> ><<<<<.<<<..>>>.>>>>>	?	GO:0000447 ...	Q02354	32943522
12	6lqv:B8 (4.8)	BS02	>6lqv:5A ugcgaaagcaguugaagacaaguggcuugucguucguuaauggccucguc cagcgaaggauuugguggauuacuagcuaauagcaaucuaggaaacucaa agagugcuaugguauggugacggagugcgcugugaacagagagcauuucc ggcagcagagauuucagcugu <<<....>>>...<<<<<<<<<<.>>>>>>>.>>>............... .........................<<<...>>>................ ....................<<<<.<<<.<<......>>...>>>..>>> ><<<<<.<<<..>>>.>>>>>	?	GO:0000292 ...	P40362	32943522
13	6lqv:BE (4.8)	BS02	>6lqv:5A ugcgaaagcaguugaagacaaguggcuugucguucguuaauggccucguc cagcgaaggauuugguggauuacuagcuaauagcaaucuaggaaacucaa agagugcuaugguauggugacggagugcgcugugaacagagagcauuucc ggcagcagagauuucagcugu <<<....>>>...<<<<<<<<<<.>>>>>>>.>>>............... .........................<<<...>>>................ ....................<<<<.<<<.<<......>>...>>>..>>> ><<<<<.<<<..>>>.>>>>>	?	GO:0003674 ...	Q06078	32943522
14	6lqv:RQ (4.8)	BS01	>6lqv:5A ugcgaaagcaguugaagacaaguggcuugucguucguuaauggccucguc cagcgaaggauuugguggauuacuagcuaauagcaaucuaggaaacucaa agagugcuaugguauggugacggagugcgcugugaacagagagcauuucc ggcagcagagauuucagcugu <<<....>>>...<<<<<<<<<<.>>>>>>>.>>>............... .........................<<<...>>>................ ....................<<<<.<<<.<<......>>...>>>..>>> ><<<<<.<<<..>>>.>>>>>	?	GO:0000447 ...	Q04500	32943522