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BioLiP
Download all results in tab-seperated text for 15 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		RNA
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    1 6lqr:3D
    (8.6)    		 BS02 >6lqr:5A (identical to 7d63:5A)
    ugcgaaagcaguugaagacaaguggcuugucguucguuaauggccucguc
cagcgaaggauuugguggauuacuagcuaauagcaaucuaggaaacucaa
agagugcuaugguauggugacggagugcgcuggucaagaguguaaaagcu
uuuugaacagagagcauuuccggcagcagagauuucagcugu
<<<....>>>...<<<<<<<<<<.>>>>>>>.>>>...............
.........................<<<...>>>................
....................<<<<.<<<.<<<.<<<<<<<<......>>>
>.>>>>.>>>...>>>..>>>><<<<<.<<<..>>>.>>>>>
    		 ? GO:0000154 ... Q12460 32943522
    2 6lqr:3E
    (8.6)    		 BS02 >6lqr:5A (identical to 7d63:5A)
    ugcgaaagcaguugaagacaaguggcuugucguucguuaauggccucguc
cagcgaaggauuugguggauuacuagcuaauagcaaucuaggaaacucaa
agagugcuaugguauggugacggagugcgcuggucaagaguguaaaagcu
uuuugaacagagagcauuuccggcagcagagauuucagcugu
<<<....>>>...<<<<<<<<<<.>>>>>>>.>>>...............
.........................<<<...>>>................
....................<<<<.<<<.<<<.<<<<<<<<......>>>
>.>>>>.>>>...>>>..>>>><<<<<.<<<..>>>.>>>>>
    		 ? GO:0000447 ... Q12499 32943522
    3 6lqr:5C
    (8.6)    		 BS02 >6lqr:5A (identical to 7d63:5A)
    ugcgaaagcaguugaagacaaguggcuugucguucguuaauggccucguc
cagcgaaggauuugguggauuacuagcuaauagcaaucuaggaaacucaa
agagugcuaugguauggugacggagugcgcuggucaagaguguaaaagcu
uuuugaacagagagcauuuccggcagcagagauuucagcugu
<<<....>>>...<<<<<<<<<<.>>>>>>>.>>>...............
.........................<<<...>>>................
....................<<<<.<<<.<<<.<<<<<<<<......>>>
>.>>>>.>>>...>>>..>>>><<<<<.<<<..>>>.>>>>>
    		 ? GO:0000447 ... P40055 32943522
    4 6lqr:5I
    (8.6)    		 BS02 >6lqr:5A (identical to 7d63:5A)
    ugcgaaagcaguugaagacaaguggcuugucguucguuaauggccucguc
cagcgaaggauuugguggauuacuagcuaauagcaaucuaggaaacucaa
agagugcuaugguauggugacggagugcgcuggucaagaguguaaaagcu
uuuugaacagagagcauuuccggcagcagagauuucagcugu
<<<....>>>...<<<<<<<<<<.>>>>>>>.>>>...............
.........................<<<...>>>................
....................<<<<.<<<.<<<.<<<<<<<<......>>>
>.>>>>.>>>...>>>..>>>><<<<<.<<<..>>>.>>>>>
    		 ? GO:0000462 ... P33750 32943522
    5 6lqr:A4
    (8.6)    		 BS01 >6lqr:5A (identical to 7d63:5A)
    ugcgaaagcaguugaagacaaguggcuugucguucguuaauggccucguc
cagcgaaggauuugguggauuacuagcuaauagcaaucuaggaaacucaa
agagugcuaugguauggugacggagugcgcuggucaagaguguaaaagcu
uuuugaacagagagcauuuccggcagcagagauuucagcugu
<<<....>>>...<<<<<<<<<<.>>>>>>>.>>>...............
.........................<<<...>>>................
....................<<<<.<<<.<<<.<<<<<<<<......>>>
>.>>>>.>>>...>>>..>>>><<<<<.<<<..>>>.>>>>>
    		 ? GO:0000462 ... Q06679 32943522
    6 6lqr:A9
    (8.6)    		 BS01 >6lqr:5A (identical to 7d63:5A)
    ugcgaaagcaguugaagacaaguggcuugucguucguuaauggccucguc
cagcgaaggauuugguggauuacuagcuaauagcaaucuaggaaacucaa
agagugcuaugguauggugacggagugcgcuggucaagaguguaaaagcu
uuuugaacagagagcauuuccggcagcagagauuucagcugu
<<<....>>>...<<<<<<<<<<.>>>>>>>.>>>...............
.........................<<<...>>>................
....................<<<<.<<<.<<<.<<<<<<<<......>>>
>.>>>>.>>>...>>>..>>>><<<<<.<<<..>>>.>>>>>
    		 ? GO:0000049 ... P38882 32943522
    7 6lqr:AE
    (8.6)    		 BS02 >6lqr:5A (identical to 7d63:5A)
    ugcgaaagcaguugaagacaaguggcuugucguucguuaauggccucguc
cagcgaaggauuugguggauuacuagcuaauagcaaucuaggaaacucaa
agagugcuaugguauggugacggagugcgcuggucaagaguguaaaagcu
uuuugaacagagagcauuuccggcagcagagauuucagcugu
<<<....>>>...<<<<<<<<<<.>>>>>>>.>>>...............
.........................<<<...>>>................
....................<<<<.<<<.<<<.<<<<<<<<......>>>
>.>>>>.>>>...>>>..>>>><<<<<.<<<..>>>.>>>>>
    		 ? GO:0000447 ... P42945 32943522
    8 6lqr:AF
    (8.6)    		 BS01 >6lqr:5A (identical to 7d63:5A)
    ugcgaaagcaguugaagacaaguggcuugucguucguuaauggccucguc
cagcgaaggauuugguggauuacuagcuaauagcaaucuaggaaacucaa
agagugcuaugguauggugacggagugcgcuggucaagaguguaaaagcu
uuuugaacagagagcauuuccggcagcagagauuucagcugu
<<<....>>>...<<<<<<<<<<.>>>>>>>.>>>...............
.........................<<<...>>>................
....................<<<<.<<<.<<<.<<<<<<<<......>>>
>.>>>>.>>>...>>>..>>>><<<<<.<<<..>>>.>>>>>
    		 ? GO:0000462 ... Q04305 32943522
    9 6lqr:AG
    (8.6)    		 BS02 >6lqr:5A (identical to 7d63:5A)
    ugcgaaagcaguugaagacaaguggcuugucguucguuaauggccucguc
cagcgaaggauuugguggauuacuagcuaauagcaaucuaggaaacucaa
agagugcuaugguauggugacggagugcgcuggucaagaguguaaaagcu
uuuugaacagagagcauuuccggcagcagagauuucagcugu
<<<....>>>...<<<<<<<<<<.>>>>>>>.>>>...............
.........................<<<...>>>................
....................<<<<.<<<.<<<.<<<<<<<<......>>>
>.>>>>.>>>...>>>..>>>><<<<<.<<<..>>>.>>>>>
    		 ? GO:0000462 ... Q02931 32943522
    10 6lqr:B1
    (8.6)    		 BS02 >6lqr:5A (identical to 7d63:5A)
    ugcgaaagcaguugaagacaaguggcuugucguucguuaauggccucguc
cagcgaaggauuugguggauuacuagcuaauagcaaucuaggaaacucaa
agagugcuaugguauggugacggagugcgcuggucaagaguguaaaagcu
uuuugaacagagagcauuuccggcagcagagauuucagcugu
<<<....>>>...<<<<<<<<<<.>>>>>>>.>>>...............
.........................<<<...>>>................
....................<<<<.<<<.<<<.<<<<<<<<......>>>
>.>>>>.>>>...>>>..>>>><<<<<.<<<..>>>.>>>>>
    		 ? GO:0000028 ... P25635 32943522
    11 6lqr:B6
    (8.6)    		 BS01 >6lqr:5A (identical to 7d63:5A)
    ugcgaaagcaguugaagacaaguggcuugucguucguuaauggccucguc
cagcgaaggauuugguggauuacuagcuaauagcaaucuaggaaacucaa
agagugcuaugguauggugacggagugcgcuggucaagaguguaaaagcu
uuuugaacagagagcauuuccggcagcagagauuucagcugu
<<<....>>>...<<<<<<<<<<.>>>>>>>.>>>...............
.........................<<<...>>>................
....................<<<<.<<<.<<<.<<<<<<<<......>>>
>.>>>>.>>>...>>>..>>>><<<<<.<<<..>>>.>>>>>
    		 ? GO:0000447 ... Q02354 32943522
    12 6lqr:B8
    (8.6)    		 BS02 >6lqr:5A (identical to 7d63:5A)
    ugcgaaagcaguugaagacaaguggcuugucguucguuaauggccucguc
cagcgaaggauuugguggauuacuagcuaauagcaaucuaggaaacucaa
agagugcuaugguauggugacggagugcgcuggucaagaguguaaaagcu
uuuugaacagagagcauuuccggcagcagagauuucagcugu
<<<....>>>...<<<<<<<<<<.>>>>>>>.>>>...............
.........................<<<...>>>................
....................<<<<.<<<.<<<.<<<<<<<<......>>>
>.>>>>.>>>...>>>..>>>><<<<<.<<<..>>>.>>>>>
    		 ? GO:0000292 ... P40362 32943522
    13 6lqr:BE
    (8.6)    		 BS02 >6lqr:5A (identical to 7d63:5A)
    ugcgaaagcaguugaagacaaguggcuugucguucguuaauggccucguc
cagcgaaggauuugguggauuacuagcuaauagcaaucuaggaaacucaa
agagugcuaugguauggugacggagugcgcuggucaagaguguaaaagcu
uuuugaacagagagcauuuccggcagcagagauuucagcugu
<<<....>>>...<<<<<<<<<<.>>>>>>>.>>>...............
.........................<<<...>>>................
....................<<<<.<<<.<<<.<<<<<<<<......>>>
>.>>>>.>>>...>>>..>>>><<<<<.<<<..>>>.>>>>>
    		 ? GO:0003674 ... Q06078 32943522
    14 6lqr:RP
    (8.6)    		 BS01 >6lqr:5A (identical to 7d63:5A)
    ugcgaaagcaguugaagacaaguggcuugucguucguuaauggccucguc
cagcgaaggauuugguggauuacuagcuaauagcaaucuaggaaacucaa
agagugcuaugguauggugacggagugcgcuggucaagaguguaaaagcu
uuuugaacagagagcauuuccggcagcagagauuucagcugu
<<<....>>>...<<<<<<<<<<.>>>>>>>.>>>...............
.........................<<<...>>>................
....................<<<<.<<<.<<<.<<<<<<<<......>>>
>.>>>>.>>>...>>>..>>>><<<<<.<<<..>>>.>>>>>
    		 ? GO:0000447 ... P35194 32943522
    15 6lqr:RQ
    (8.6)    		 BS01 >6lqr:5A (identical to 7d63:5A)
    ugcgaaagcaguugaagacaaguggcuugucguucguuaauggccucguc
cagcgaaggauuugguggauuacuagcuaauagcaaucuaggaaacucaa
agagugcuaugguauggugacggagugcgcuggucaagaguguaaaagcu
uuuugaacagagagcauuuccggcagcagagauuucagcugu
<<<....>>>...<<<<<<<<<<.>>>>>>>.>>>...............
.........................<<<...>>>................
....................<<<<.<<<.<<<.<<<<<<<<......>>>
>.>>>>.>>>...>>>..>>>><<<<<.<<<..>>>.>>>>>
    		 ? GO:0000447 ... Q04500 32943522
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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