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BioLiP
Download all results in tab-seperated text for 13 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		RNA
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    1 5mq0:A
    (4.17)    		 BS05 >5mq0:5 (identical to 5gam:U, 5gan:U, 5lj3:U, 5lj5:U, 5lqw:5, 5mps:5)
    cagcuuuacagaucaauggcggagggaggucaacaucaagaacugugggc
gccuauagaacuuauaacgaacaugguucuugccuuuuaccagaaccauc
cggguguugucuccauagaaacagguaaagcuguauuuuuu
<<<<<<<<<.......<.......<<<<<.<<<<<<<.....<<<<<<<.
.>>>>>>>..............<<<<<<<<...........>>>>>>>>.
..>>>>>>>>>>>>......>...>>>>>>>>>........
    		 ? GO:0000244 ... P33334 28076345
    2 5mq0:C
    (4.17)    		 BS01 >5mq0:5 (identical to 5gam:U, 5gan:U, 5lj3:U, 5lj5:U, 5lqw:5, 5mps:5)
    cagcuuuacagaucaauggcggagggaggucaacaucaagaacugugggc
gccuauagaacuuauaacgaacaugguucuugccuuuuaccagaaccauc
cggguguugucuccauagaaacagguaaagcuguauuuuuu
<<<<<<<<<.......<.......<<<<<.<<<<<<<.....<<<<<<<.
.>>>>>>>..............<<<<<<<<...........>>>>>>>>.
..>>>>>>>>>>>>......>...>>>>>>>>>........
    		 ? GO:0000244 ... P36048 28076345
    3 5mq0:J
    (4.17)    		 BS01 >5mq0:5 (identical to 5gam:U, 5gan:U, 5lj3:U, 5lj5:U, 5lqw:5, 5mps:5)
    cagcuuuacagaucaauggcggagggaggucaacaucaagaacugugggc
gccuauagaacuuauaacgaacaugguucuugccuuuuaccagaaccauc
cggguguugucuccauagaaacagguaaagcuguauuuuuu
<<<<<<<<<.......<.......<<<<<.<<<<<<<.....<<<<<<<.
.>>>>>>>..............<<<<<<<<...........>>>>>>>>.
..>>>>>>>>>>>>......>...>>>>>>>>>........
    		 ? GO:0000398 ... Q12417 28076345
    4 5mq0:K
    (4.17)    		 BS03 >5mq0:5 (identical to 5gam:U, 5gan:U, 5lj3:U, 5lj5:U, 5lqw:5, 5mps:5)
    cagcuuuacagaucaauggcggagggaggucaacaucaagaacugugggc
gccuauagaacuuauaacgaacaugguucuugccuuuuaccagaaccauc
cggguguugucuccauagaaacagguaaagcuguauuuuuu
<<<<<<<<<.......<.......<<<<<.<<<<<<<.....<<<<<<<.
.>>>>>>>..............<<<<<<<<...........>>>>>>>>.
..>>>>>>>>>>>>......>...>>>>>>>>>........
    		 ? GO:0000350 ... P28004 28076345
    5 5mq0:L
    (4.17)    		 BS02 >5mq0:5 (identical to 5gam:U, 5gan:U, 5lj3:U, 5lj5:U, 5lqw:5, 5mps:5)
    cagcuuuacagaucaauggcggagggaggucaacaucaagaacugugggc
gccuauagaacuuauaacgaacaugguucuugccuuuuaccagaaccauc
cggguguugucuccauagaaacagguaaagcuguauuuuuu
<<<<<<<<<.......<.......<<<<<.<<<<<<<.....<<<<<<<.
.>>>>>>>..............<<<<<<<<...........>>>>>>>>.
..>>>>>>>>>>>>......>...>>>>>>>>>........
    		 ? GO:0000282 ... P25337 28076345
    6 5mq0:P
    (4.17)    		 BS03 >5mq0:5 (identical to 5gam:U, 5gan:U, 5lj3:U, 5lj5:U, 5lqw:5, 5mps:5)
    cagcuuuacagaucaauggcggagggaggucaacaucaagaacugugggc
gccuauagaacuuauaacgaacaugguucuugccuuuuaccagaaccauc
cggguguugucuccauagaaacagguaaagcuguauuuuuu
<<<<<<<<<.......<.......<<<<<.<<<<<<<.....<<<<<<<.
.>>>>>>>..............<<<<<<<<...........>>>>>>>>.
..>>>>>>>>>>>>......>...>>>>>>>>>........
    		 ? GO:0000398 ... Q03772 28076345
    7 5mq0:b
    (4.17)    		 BS01 >5mq0:5 (identical to 5gam:U, 5gan:U, 5lj3:U, 5lj5:U, 5lqw:5, 5mps:5)
    cagcuuuacagaucaauggcggagggaggucaacaucaagaacugugggc
gccuauagaacuuauaacgaacaugguucuugccuuuuaccagaaccauc
cggguguugucuccauagaaacagguaaagcuguauuuuuu
<<<<<<<<<.......<.......<<<<<.<<<<<<<.....<<<<<<<.
.>>>>>>>..............<<<<<<<<...........>>>>>>>>.
..>>>>>>>>>>>>......>...>>>>>>>>>........
    		 ? GO:0000243 ... P40018 28076345
    8 5mq0:d
    (4.17)    		 BS01 >5mq0:5 (identical to 5gam:U, 5gan:U, 5lj3:U, 5lj5:U, 5lqw:5, 5mps:5)
    cagcuuuacagaucaauggcggagggaggucaacaucaagaacugugggc
gccuauagaacuuauaacgaacaugguucuugccuuuuaccagaaccauc
cggguguugucuccauagaaacagguaaagcuguauuuuuu
<<<<<<<<<.......<.......<<<<<.<<<<<<<.....<<<<<<<.
.>>>>>>>..............<<<<<<<<...........>>>>>>>>.
..>>>>>>>>>>>>......>...>>>>>>>>>........
    		 ? GO:0000243 ... P43321 28076345
    9 5mq0:e
    (4.17)    		 BS01 >5mq0:5 (identical to 5gam:U, 5gan:U, 5lj3:U, 5lj5:U, 5lqw:5, 5mps:5)
    cagcuuuacagaucaauggcggagggaggucaacaucaagaacugugggc
gccuauagaacuuauaacgaacaugguucuugccuuuuaccagaaccauc
cggguguugucuccauagaaacagguaaagcuguauuuuuu
<<<<<<<<<.......<.......<<<<<.<<<<<<<.....<<<<<<<.
.>>>>>>>..............<<<<<<<<...........>>>>>>>>.
..>>>>>>>>>>>>......>...>>>>>>>>>........
    		 ? GO:0000243 ... Q12330 28076345
    10 5mq0:f
    (4.17)    		 BS01 >5mq0:5 (identical to 5gam:U, 5gan:U, 5lj3:U, 5lj5:U, 5lqw:5, 5mps:5)
    cagcuuuacagaucaauggcggagggaggucaacaucaagaacugugggc
gccuauagaacuuauaacgaacaugguucuugccuuuuaccagaaccauc
cggguguugucuccauagaaacagguaaagcuguauuuuuu
<<<<<<<<<.......<.......<<<<<.<<<<<<<.....<<<<<<<.
.>>>>>>>..............<<<<<<<<...........>>>>>>>>.
..>>>>>>>>>>>>......>...>>>>>>>>>........
    		 ? GO:0000243 ... P54999 28076345
    11 5mq0:g
    (4.17)    		 BS01 >5mq0:5 (identical to 5gam:U, 5gan:U, 5lj3:U, 5lj5:U, 5lqw:5, 5mps:5)
    cagcuuuacagaucaauggcggagggaggucaacaucaagaacugugggc
gccuauagaacuuauaacgaacaugguucuugccuuuuaccagaaccauc
cggguguugucuccauagaaacagguaaagcuguauuuuuu
<<<<<<<<<.......<.......<<<<<.<<<<<<<.....<<<<<<<.
.>>>>>>>..............<<<<<<<<...........>>>>>>>>.
..>>>>>>>>>>>>......>...>>>>>>>>>........
    		 ? GO:0000243 ... P40204 28076345
    12 5mq0:h
    (4.17)    		 BS01 >5mq0:5 (identical to 5gam:U, 5gan:U, 5lj3:U, 5lj5:U, 5lqw:5, 5mps:5)
    cagcuuuacagaucaauggcggagggaggucaacaucaagaacugugggc
gccuauagaacuuauaacgaacaugguucuugccuuuuaccagaaccauc
cggguguugucuccauagaaacagguaaagcuguauuuuuu
<<<<<<<<<.......<.......<<<<<.<<<<<<<.....<<<<<<<.
.>>>>>>>..............<<<<<<<<...........>>>>>>>>.
..>>>>>>>>>>>>......>...>>>>>>>>>........
    		 ? GO:0000243 ... Q02260 28076345
    13 5mq0:j
    (4.17)    		 BS01 >5mq0:5 (identical to 5gam:U, 5gan:U, 5lj3:U, 5lj5:U, 5lqw:5, 5mps:5)
    cagcuuuacagaucaauggcggagggaggucaacaucaagaacugugggc
gccuauagaacuuauaacgaacaugguucuugccuuuuaccagaaccauc
cggguguugucuccauagaaacagguaaagcuguauuuuuu
<<<<<<<<<.......<.......<<<<<.<<<<<<<.....<<<<<<<.
.>>>>>>>..............<<<<<<<<...........>>>>>>>>.
..>>>>>>>>>>>>......>...>>>>>>>>>........
    		 ? GO:0000243 ... Q06217 28076345
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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