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BioLiP
Download all results in tab-seperated text for 3 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		Peptide
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    1 7miz:B4
    (3.4)    		 BS01 >7miz:5 (identical to 7miz:0, 7miz:1, 7miz:2, 7miz:3, 7miz:4, 7miz:6, 7miz:7, 7miz:8, 7miz:9, 7miz:10, 7miz:11, 7miz:12, 7miz:13, 7miz:14, 7miz:15, 7miz:16, 7miz:17, 7miz:18, 7miz:19, 7miz:20, 7miz:21, 7tnq:0, 7tnq:1, 7tnq:10, 7tnq:11, 7tnq:12, 7tnq:13, 7tnq:14, 7tnq:15, 7tnq:16, 7tnq:17, 7tnq:18, 7tnq:19, 7tnq:2, 7tnq:20, 7tnq:21, 7tnq:3, 7tnq:4, 7tnq:5, 7tnq:6, 7tnq:7, 7tnq:8, 7tnq:9, 7tns:0, 7tns:1, 7tns:10, 7tns:11, 7tns:12, 7tns:13, 7tns:14, 7tns:15, 7tns:16, 7tns:17, 7tns:18, 7tns:19, 7tns:2, 7tns:20, 7tns:21, 7tns:3, 7tns:4, 7tns:5, 7tns:6, 7tns:7, 7tns:8, 7tns:9)
    PTLPFNAQSCYRSEYVAKPLPP
    		 3.6.5.- GO:0000226 ... P10873 34031406
    2 7miz:B5
    (3.4)    		 BS01 >7miz:5 (identical to 7miz:0, 7miz:1, 7miz:2, 7miz:3, 7miz:4, 7miz:6, 7miz:7, 7miz:8, 7miz:9, 7miz:10, 7miz:11, 7miz:12, 7miz:13, 7miz:14, 7miz:15, 7miz:16, 7miz:17, 7miz:18, 7miz:19, 7miz:20, 7miz:21, 7tnq:0, 7tnq:1, 7tnq:10, 7tnq:11, 7tnq:12, 7tnq:13, 7tnq:14, 7tnq:15, 7tnq:16, 7tnq:17, 7tnq:18, 7tnq:19, 7tnq:2, 7tnq:20, 7tnq:21, 7tnq:3, 7tnq:4, 7tnq:5, 7tnq:6, 7tnq:7, 7tnq:8, 7tnq:9, 7tns:0, 7tns:1, 7tns:10, 7tns:11, 7tns:12, 7tns:13, 7tns:14, 7tns:15, 7tns:16, 7tns:17, 7tns:18, 7tns:19, 7tns:2, 7tns:20, 7tns:21, 7tns:3, 7tns:4, 7tns:5, 7tns:6, 7tns:7, 7tns:8, 7tns:9)
    PTLPFNAQSCYRSEYVAKPLPP
    		 ? GO:0000226 ... I7BFC9 34031406
    3 7miz:h
    (3.4)    		 BS01 >7miz:5 (identical to 7miz:0, 7miz:1, 7miz:2, 7miz:3, 7miz:4, 7miz:6, 7miz:7, 7miz:8, 7miz:9, 7miz:10, 7miz:11, 7miz:12, 7miz:13, 7miz:14, 7miz:15, 7miz:16, 7miz:17, 7miz:18, 7miz:19, 7miz:20, 7miz:21, 7tnq:0, 7tnq:1, 7tnq:10, 7tnq:11, 7tnq:12, 7tnq:13, 7tnq:14, 7tnq:15, 7tnq:16, 7tnq:17, 7tnq:18, 7tnq:19, 7tnq:2, 7tnq:20, 7tnq:21, 7tnq:3, 7tnq:4, 7tnq:5, 7tnq:6, 7tnq:7, 7tnq:8, 7tnq:9, 7tns:0, 7tns:1, 7tns:10, 7tns:11, 7tns:12, 7tns:13, 7tns:14, 7tns:15, 7tns:16, 7tns:17, 7tns:18, 7tns:19, 7tns:2, 7tns:20, 7tns:21, 7tns:3, 7tns:4, 7tns:5, 7tns:6, 7tns:7, 7tns:8, 7tns:9)
    PTLPFNAQSCYRSEYVAKPLPP
    		 ? GO:0004791 ... Q8MPF4 34031406
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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