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BioLiP
Download all results in tab-seperated text for 10 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		RNA
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    1 7q0f:8
    (2.64)    		 BS02 >7q0f:4 (identical to 8c3a:AU, 8cq7:AU, 8cre:AU, 8oeq:AU, 7pzy:4, 7q08:4, 7q0p:4, 7q0r:4, 8q5i:4)
    aaacuuucaacaacggaucucuugguucucgcaucgaugaagaacgcagc
gaaaugcgauacguaauaugaauugcagauauucgugaaucaucgaaucu
uugaacgcacauugcgcccucugguauuccggagggcaugccuguuugag
cgucguuu
.........................................<<<<<<.((
.....>>>.....<.<<<<.....))............>>.>>..>...>
>>....<<.....>><<<<<<<<<....>>>>>>>>>.............
........
    		 ? GO:0000027 ... A0A1D8PPS1 35613268
    2 7q0f:9
    (2.64)    		 BS02 >7q0f:4 (identical to 8c3a:AU, 8cq7:AU, 8cre:AU, 8oeq:AU, 7pzy:4, 7q08:4, 7q0p:4, 7q0r:4, 8q5i:4)
    aaacuuucaacaacggaucucuugguucucgcaucgaugaagaacgcagc
gaaaugcgauacguaauaugaauugcagauauucgugaaucaucgaaucu
uugaacgcacauugcgcccucugguauuccggagggcaugccuguuugag
cgucguuu
.........................................<<<<<<.((
.....>>>.....<.<<<<.....))............>>.>>..>...>
>>....<<.....>><<<<<<<<<....>>>>>>>>>.............
........
    		 ? GO:0002181 ... A0A1D8PCQ5 35613268
    3 7q0f:AI
    (2.64)    		 BS02 >7q0f:4 (identical to 8c3a:AU, 8cq7:AU, 8cre:AU, 8oeq:AU, 7pzy:4, 7q08:4, 7q0p:4, 7q0r:4, 8q5i:4)
    aaacuuucaacaacggaucucuugguucucgcaucgaugaagaacgcagc
gaaaugcgauacguaauaugaauugcagauauucgugaaucaucgaaucu
uugaacgcacauugcgcccucugguauuccggagggcaugccuguuugag
cgucguuu
.........................................<<<<<<.((
.....>>>.....<.<<<<.....))............>>.>>..>...>
>>....<<.....>><<<<<<<<<....>>>>>>>>>.............
........
    		 ? GO:0000463 ... A0A1D8PK30 35613268
    4 7q0f:AK
    (2.64)    		 BS02 >7q0f:4 (identical to 8c3a:AU, 8cq7:AU, 8cre:AU, 8oeq:AU, 7pzy:4, 7q08:4, 7q0p:4, 7q0r:4, 8q5i:4)
    aaacuuucaacaacggaucucuugguucucgcaucgaugaagaacgcagc
gaaaugcgauacguaauaugaauugcagauauucgugaaucaucgaaucu
uugaacgcacauugcgcccucugguauuccggagggcaugccuguuugag
cgucguuu
.........................................<<<<<<.((
.....>>>.....<.<<<<.....))............>>.>>..>...>
>>....<<.....>><<<<<<<<<....>>>>>>>>>.............
........
    		 ? GO:0003723 ... A0A1D8PF45 35613268
    5 7q0f:AM
    (2.64)    		 BS02 >7q0f:4 (identical to 8c3a:AU, 8cq7:AU, 8cre:AU, 8oeq:AU, 7pzy:4, 7q08:4, 7q0p:4, 7q0r:4, 8q5i:4)
    aaacuuucaacaacggaucucuugguucucgcaucgaugaagaacgcagc
gaaaugcgauacguaauaugaauugcagauauucgugaaucaucgaaucu
uugaacgcacauugcgcccucugguauuccggagggcaugccuguuugag
cgucguuu
.........................................<<<<<<.((
.....>>>.....<.<<<<.....))............>>.>>..>...>
>>....<<.....>><<<<<<<<<....>>>>>>>>>.............
........
    		 ? GO:0003735 ... A0A1D8PDT4 35613268
    6 7q0f:l
    (2.64)    		 BS02 >7q0f:4 (identical to 8c3a:AU, 8cq7:AU, 8cre:AU, 8oeq:AU, 7pzy:4, 7q08:4, 7q0p:4, 7q0r:4, 8q5i:4)
    aaacuuucaacaacggaucucuugguucucgcaucgaugaagaacgcagc
gaaaugcgauacguaauaugaauugcagauauucgugaaucaucgaaucu
uugaacgcacauugcgcccucugguauuccggagggcaugccuguuugag
cgucguuu
.........................................<<<<<<.((
.....>>>.....<.<<<<.....))............>>.>>..>...>
>>....<<.....>><<<<<<<<<....>>>>>>>>>.............
........
    		 ? GO:0003723 ... A0A1D8PFV1 35613268
    7 7q0f:p
    (2.64)    		 BS02 >7q0f:4 (identical to 8c3a:AU, 8cq7:AU, 8cre:AU, 8oeq:AU, 7pzy:4, 7q08:4, 7q0p:4, 7q0r:4, 8q5i:4)
    aaacuuucaacaacggaucucuugguucucgcaucgaugaagaacgcagc
gaaaugcgauacguaauaugaauugcagauauucgugaaucaucgaaucu
uugaacgcacauugcgcccucugguauuccggagggcaugccuguuugag
cgucguuu
.........................................<<<<<<.((
.....>>>.....<.<<<<.....))............>>.>>..>...>
>>....<<.....>><<<<<<<<<....>>>>>>>>>.............
........
    		 ? GO:0000470 ... Q5ANA1 35613268
    8 7q0f:t
    (2.64)    		 BS02 >7q0f:4 (identical to 8c3a:AU, 8cq7:AU, 8cre:AU, 8oeq:AU, 7pzy:4, 7q08:4, 7q0p:4, 7q0r:4, 8q5i:4)
    aaacuuucaacaacggaucucuugguucucgcaucgaugaagaacgcagc
gaaaugcgauacguaauaugaauugcagauauucgugaaucaucgaaucu
uugaacgcacauugcgcccucugguauuccggagggcaugccuguuugag
cgucguuu
.........................................<<<<<<.((
.....>>>.....<.<<<<.....))............>>.>>..>...>
>>....<<.....>><<<<<<<<<....>>>>>>>>>.............
........
    		 ? GO:0003723 ... O59931 35613268
    9 7q0f:v
    (2.64)    		 BS02 >7q0f:4 (identical to 8c3a:AU, 8cq7:AU, 8cre:AU, 8oeq:AU, 7pzy:4, 7q08:4, 7q0p:4, 7q0r:4, 8q5i:4)
    aaacuuucaacaacggaucucuugguucucgcaucgaugaagaacgcagc
gaaaugcgauacguaauaugaauugcagauauucgugaaucaucgaaucu
uugaacgcacauugcgcccucugguauuccggagggcaugccuguuugag
cgucguuu
.........................................<<<<<<.((
.....>>>.....<.<<<<.....))............>>.>>..>...>
>>....<<.....>><<<<<<<<<....>>>>>>>>>.............
........
    		 ? GO:0002181 ... Q5A6R1 35613268
    10 7q0f:x
    (2.64)    		 BS02 >7q0f:4 (identical to 8c3a:AU, 8cq7:AU, 8cre:AU, 8oeq:AU, 7pzy:4, 7q08:4, 7q0p:4, 7q0r:4, 8q5i:4)
    aaacuuucaacaacggaucucuugguucucgcaucgaugaagaacgcagc
gaaaugcgauacguaauaugaauugcagauauucgugaaucaucgaaucu
uugaacgcacauugcgcccucugguauuccggagggcaugccuguuugag
cgucguuu
.........................................<<<<<<.((
.....>>>.....<.<<<<.....))............>>.>>..>...>
>>....<<.....>><<<<<<<<<....>>>>>>>>>.............
........
    		 ? GO:0002181 ... Q59TE0 35613268
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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