BioLiP

Download all results in tab-seperated text for 9 receptor-ligand interactions, whose format is explained at readme.txt.

Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.

Click Site # to view the binding site structure. Hover over Site # to view the binding residues.

The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.

Hover over EC number to view the full name of enzymatic activity.

Hover over GO terms to view all GO terms.

Hover over UniProt to view the protein name.

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ggggcugauucuggauucgacgggauuugcgaaacccaaggugcaugccg
aggggcgguuggccucguaaaaagccgcaaaaaauagucgcaaacgacga
aaacuacgcuuuagcagcuuaauaaccugcuuagagcccucucucccuag
ccuccgcucuuaggacggggaucaagagaggucaaacccaaaagagaucg
cguggaagcccugccugggguugaagcguuaaaacuuaaucaggcuaguu
uguuaguggcguguccguccgcagcuggcaagcgaauguaaagacugacu
aagcauguaguaccgaggauguaggaauuucggacgcggguucaacuccc
gccagcuccacca
<<<<<<<..............<<<.<<<.......<<..<<...<<...(
.....<<<<......).......>>>>.......................
.......<<<...<<.............>>..>..>>.<<<<<<<<<<..
.<<....(...>>...>>>>....>>>>>>..............).....
<<.....<<<...((...>>>.....>>..............))......
<<...........((.............>>................))..
....>>......>>..>>.....>>.>>>>......<<<<.......>>>
>.>>>>>>>....
ggggcugauucuggauucgacgggauuugcgaaacccaaggugcaugccg
aggggcgguuggccucguaaaaagccgcaaaaaauagucgcaaacgacga
aaacuacgcuuuagcagcuuaauaaccugcuuagagcccucucucccuag
ccuccgcucuuaggacggggaucaagagaggucaaacccaaaagagaucg
cguggaagcccugccugggguugaagcguuaaaacuuaaucaggcuaguu
uguuaguggcguguccguccgcagcuggcaagcgaauguaaagacugacu
aagcauguaguaccgaggauguaggaauuucggacgcggguucaacuccc
gccagcuccacca
<<<<<<<..............<<<.<<<.......<<..<<...<<...(
.....<<<<......).......>>>>.......................
.......<<<...<<.............>>..>..>>.<<<<<<<<<<..
.<<....(...>>...>>>>....>>>>>>..............).....
<<.....<<<...((...>>>.....>>..............))......
<<...........((.............>>................))..
....>>......>>..>>.....>>.>>>>......<<<<.......>>>
>.>>>>>>>....
ggggcugauucuggauucgacgggauuugcgaaacccaaggugcaugccg
aggggcgguuggccucguaaaaagccgcaaaaaauagucgcaaacgacga
aaacuacgcuuuagcagcuuaauaaccugcuuagagcccucucucccuag
ccuccgcucuuaggacggggaucaagagaggucaaacccaaaagagaucg
cguggaagcccugccugggguugaagcguuaaaacuuaaucaggcuaguu
uguuaguggcguguccguccgcagcuggcaagcgaauguaaagacugacu
aagcauguaguaccgaggauguaggaauuucggacgcggguucaacuccc
gccagcuccacca
<<<<<<<..............<<<.<<<.......<<..<<...<<...(
.....<<<<......).......>>>>.......................
.......<<<...<<.............>>..>..>>.<<<<<<<<<<..
.<<....(...>>...>>>>....>>>>>>..............).....
<<.....<<<...((...>>>.....>>..............))......
<<...........((.............>>................))..
....>>......>>..>>.....>>.>>>>......<<<<.......>>>
>.>>>>>>>....
ggggcugauucuggauucgacgggauuugcgaaacccaaggugcaugccg
aggggcgguuggccucguaaaaagccgcaaaaaauagucgcaaacgacga
aaacuacgcuuuagcagcuuaauaaccugcuuagagcccucucucccuag
ccuccgcucuuaggacggggaucaagagaggucaaacccaaaagagaucg
cguggaagcccugccugggguugaagcguuaaaacuuaaucaggcuaguu
uguuaguggcguguccguccgcagcuggcaagcgaauguaaagacugacu
aagcauguaguaccgaggauguaggaauuucggacgcggguucaacuccc
gccagcuccacca
<<<<<<<..............<<<.<<<.......<<..<<...<<...(
.....<<<<......).......>>>>.......................
.......<<<...<<.............>>..>..>>.<<<<<<<<<<..
.<<....(...>>...>>>>....>>>>>>..............).....
<<.....<<<...((...>>>.....>>..............))......
<<...........((.............>>................))..
....>>......>>..>>.....>>.>>>>......<<<<.......>>>
>.>>>>>>>....
ggggcugauucuggauucgacgggauuugcgaaacccaaggugcaugccg
aggggcgguuggccucguaaaaagccgcaaaaaauagucgcaaacgacga
aaacuacgcuuuagcagcuuaauaaccugcuuagagcccucucucccuag
ccuccgcucuuaggacggggaucaagagaggucaaacccaaaagagaucg
cguggaagcccugccugggguugaagcguuaaaacuuaaucaggcuaguu
uguuaguggcguguccguccgcagcuggcaagcgaauguaaagacugacu
aagcauguaguaccgaggauguaggaauuucggacgcggguucaacuccc
gccagcuccacca
<<<<<<<..............<<<.<<<.......<<..<<...<<...(
.....<<<<......).......>>>>.......................
.......<<<...<<.............>>..>..>>.<<<<<<<<<<..
.<<....(...>>...>>>>....>>>>>>..............).....
<<.....<<<...((...>>>.....>>..............))......
<<...........((.............>>................))..
....>>......>>..>>.....>>.>>>>......<<<<.......>>>
>.>>>>>>>....
ggggcugauucuggauucgacgggauuugcgaaacccaaggugcaugccg
aggggcgguuggccucguaaaaagccgcaaaaaauagucgcaaacgacga
aaacuacgcuuuagcagcuuaauaaccugcuuagagcccucucucccuag
ccuccgcucuuaggacggggaucaagagaggucaaacccaaaagagaucg
cguggaagcccugccugggguugaagcguuaaaacuuaaucaggcuaguu
uguuaguggcguguccguccgcagcuggcaagcgaauguaaagacugacu
aagcauguaguaccgaggauguaggaauuucggacgcggguucaacuccc
gccagcuccacca
<<<<<<<..............<<<.<<<.......<<..<<...<<...(
.....<<<<......).......>>>>.......................
.......<<<...<<.............>>..>..>>.<<<<<<<<<<..
.<<....(...>>...>>>>....>>>>>>..............).....
<<.....<<<...((...>>>.....>>..............))......
<<...........((.............>>................))..
....>>......>>..>>.....>>.>>>>......<<<<.......>>>
>.>>>>>>>....
ggggcugauucuggauucgacgggauuugcgaaacccaaggugcaugccg
aggggcgguuggccucguaaaaagccgcaaaaaauagucgcaaacgacga
aaacuacgcuuuagcagcuuaauaaccugcuuagagcccucucucccuag
ccuccgcucuuaggacggggaucaagagaggucaaacccaaaagagaucg
cguggaagcccugccugggguugaagcguuaaaacuuaaucaggcuaguu
uguuaguggcguguccguccgcagcuggcaagcgaauguaaagacugacu
aagcauguaguaccgaggauguaggaauuucggacgcggguucaacuccc
gccagcuccacca
<<<<<<<..............<<<.<<<.......<<..<<...<<...(
.....<<<<......).......>>>>.......................
.......<<<...<<.............>>..>..>>.<<<<<<<<<<..
.<<....(...>>...>>>>....>>>>>>..............).....
<<.....<<<...((...>>>.....>>..............))......
<<...........((.............>>................))..
....>>......>>..>>.....>>.>>>>......<<<<.......>>>
>.>>>>>>>....
ggggcugauucuggauucgacgggauuugcgaaacccaaggugcaugccg
aggggcgguuggccucguaaaaagccgcaaaaaauagucgcaaacgacga
aaacuacgcuuuagcagcuuaauaaccugcuuagagcccucucucccuag
ccuccgcucuuaggacggggaucaagagaggucaaacccaaaagagaucg
cguggaagcccugccugggguugaagcguuaaaacuuaaucaggcuaguu
uguuaguggcguguccguccgcagcuggcaagcgaauguaaagacugacu
aagcauguaguaccgaggauguaggaauuucggacgcggguucaacuccc
gccagcuccacca
<<<<<<<..............<<<.<<<.......<<..<<...<<...(
.....<<<<......).......>>>>.......................
.......<<<...<<.............>>..>..>>.<<<<<<<<<<..
.<<....(...>>...>>>>....>>>>>>..............).....
<<.....<<<...((...>>>.....>>..............))......
<<...........((.............>>................))..
....>>......>>..>>.....>>.>>>>......<<<<.......>>>
>.>>>>>>>....
ggggcugauucuggauucgacgggauuugcgaaacccaaggugcaugccg
aggggcgguuggccucguaaaaagccgcaaaaaauagucgcaaacgacga
aaacuacgcuuuagcagcuuaauaaccugcuuagagcccucucucccuag
ccuccgcucuuaggacggggaucaagagaggucaaacccaaaagagaucg
cguggaagcccugccugggguugaagcguuaaaacuuaaucaggcuaguu
uguuaguggcguguccguccgcagcuggcaagcgaauguaaagacugacu
aagcauguaguaccgaggauguaggaauuucggacgcggguucaacuccc
gccagcuccacca
<<<<<<<..............<<<.<<<.......<<..<<...<<...(
.....<<<<......).......>>>>.......................
.......<<<...<<.............>>..>..>>.<<<<<<<<<<..
.<<....(...>>...>>>>....>>>>>>..............).....
<<.....<<<...((...>>>.....>>..............))......
<<...........((.............>>................))..
....>>......>>..>>.....>>.>>>>......<<<<.......>>>
>.>>>>>>>....

#	PDB (resolution)	Site #	RNA sequence	EC number	GO terms	UniProt	PubMed
1	7acj:5 (3.2)	BS03	>7acj:4 (identical to 7abz:4, 7ac7:4, 7acr:4, 6q98:4, 6q9a:4, 8vs9:TMRN, 8vsa:TMRN) ggggcugauucuggauucgacgggauuugcgaaacccaaggugcaugccg aggggcgguuggccucguaaaaagccgcaaaaaauagucgcaaacgacga aaacuacgcuuuagcagcuuaauaaccugcuuagagcccucucucccuag ccuccgcucuuaggacggggaucaagagaggucaaacccaaaagagaucg cguggaagcccugccugggguugaagcguuaaaacuuaaucaggcuaguu uguuaguggcguguccguccgcagcuggcaagcgaauguaaagacugacu aagcauguaguaccgaggauguaggaauuucggacgcggguucaacuccc gccagcuccacca <<<<<<<..............<<<.<<<.......<<..<<...<<...( .....<<<<......).......>>>>....................... .......<<<...<<.............>>..>..>>.<<<<<<<<<<.. .<<....(...>>...>>>>....>>>>>>..............)..... <<.....<<<...((...>>>.....>>..............))...... <<...........((.............>>................)).. ....>>......>>..>>.....>>.>>>>......<<<<.......>>> >.>>>>>>>....	?	GO:0003723 ...	P0A832	34389707
2	7acj:E (3.2)	BS03	>7acj:4 (identical to 7abz:4, 7ac7:4, 7acr:4, 6q98:4, 6q9a:4, 8vs9:TMRN, 8vsa:TMRN) ggggcugauucuggauucgacgggauuugcgaaacccaaggugcaugccg aggggcgguuggccucguaaaaagccgcaaaaaauagucgcaaacgacga aaacuacgcuuuagcagcuuaauaaccugcuuagagcccucucucccuag ccuccgcucuuaggacggggaucaagagaggucaaacccaaaagagaucg cguggaagcccugccugggguugaagcguuaaaacuuaaucaggcuaguu uguuaguggcguguccguccgcagcuggcaagcgaauguaaagacugacu aagcauguaguaccgaggauguaggaauuucggacgcggguucaacuccc gccagcuccacca <<<<<<<..............<<<.<<<.......<<..<<...<<...( .....<<<<......).......>>>>....................... .......<<<...<<.............>>..>..>>.<<<<<<<<<<.. .<<....(...>>...>>>>....>>>>>>..............)..... <<.....<<<...((...>>>.....>>..............))...... <<...........((.............>>................)).. ....>>......>>..>>.....>>.>>>>......<<<<.......>>> >.>>>>>>>....	?	GO:0000027 ...	P62399	34389707
3	7acj:a (3.2)	BS03	>7acj:4 (identical to 7abz:4, 7ac7:4, 7acr:4, 6q98:4, 6q9a:4, 8vs9:TMRN, 8vsa:TMRN) ggggcugauucuggauucgacgggauuugcgaaacccaaggugcaugccg aggggcgguuggccucguaaaaagccgcaaaaaauagucgcaaacgacga aaacuacgcuuuagcagcuuaauaaccugcuuagagcccucucucccuag ccuccgcucuuaggacggggaucaagagaggucaaacccaaaagagaucg cguggaagcccugccugggguugaagcguuaaaacuuaaucaggcuaguu uguuaguggcguguccguccgcagcuggcaagcgaauguaaagacugacu aagcauguaguaccgaggauguaggaauuucggacgcggguucaacuccc gccagcuccacca <<<<<<<..............<<<.<<<.......<<..<<...<<...( .....<<<<......).......>>>>....................... .......<<<...<<.............>>..>..>>.<<<<<<<<<<.. .<<....(...>>...>>>>....>>>>>>..............)..... <<.....<<<...((...>>>.....>>..............))...... <<...........((.............>>................)).. ....>>......>>..>>.....>>.>>>>......<<<<.......>>> >.>>>>>>>....	?	GO:0002181 ...	P0A7M9	34389707
4	7acj:g (3.2)	BS02	>7acj:4 (identical to 7abz:4, 7ac7:4, 7acr:4, 6q98:4, 6q9a:4, 8vs9:TMRN, 8vsa:TMRN) ggggcugauucuggauucgacgggauuugcgaaacccaaggugcaugccg aggggcgguuggccucguaaaaagccgcaaaaaauagucgcaaacgacga aaacuacgcuuuagcagcuuaauaaccugcuuagagcccucucucccuag ccuccgcucuuaggacggggaucaagagaggucaaacccaaaagagaucg cguggaagcccugccugggguugaagcguuaaaacuuaaucaggcuaguu uguuaguggcguguccguccgcagcuggcaagcgaauguaaagacugacu aagcauguaguaccgaggauguaggaauuucggacgcggguucaacuccc gccagcuccacca <<<<<<<..............<<<.<<<.......<<..<<...<<...( .....<<<<......).......>>>>....................... .......<<<...<<.............>>..>..>>.<<<<<<<<<<.. .<<....(...>>...>>>>....>>>>>>..............)..... <<.....<<<...((...>>>.....>>..............))...... <<...........((.............>>................)).. ....>>......>>..>>.....>>.>>>>......<<<<.......>>> >.>>>>>>>....	?	GO:0000028 ...	P0A7V0	34389707
5	7acj:h (3.2)	BS02	>7acj:4 (identical to 7abz:4, 7ac7:4, 7acr:4, 6q98:4, 6q9a:4, 8vs9:TMRN, 8vsa:TMRN) ggggcugauucuggauucgacgggauuugcgaaacccaaggugcaugccg aggggcgguuggccucguaaaaagccgcaaaaaauagucgcaaacgacga aaacuacgcuuuagcagcuuaauaaccugcuuagagcccucucucccuag ccuccgcucuuaggacggggaucaagagaggucaaacccaaaagagaucg cguggaagcccugccugggguugaagcguuaaaacuuaaucaggcuaguu uguuaguggcguguccguccgcagcuggcaagcgaauguaaagacugacu aagcauguaguaccgaggauguaggaauuucggacgcggguucaacuccc gccagcuccacca <<<<<<<..............<<<.<<<.......<<..<<...<<...( .....<<<<......).......>>>>....................... .......<<<...<<.............>>..>..>>.<<<<<<<<<<.. .<<....(...>>...>>>>....>>>>>>..............)..... <<.....<<<...((...>>>.....>>..............))...... <<...........((.............>>................)).. ....>>......>>..>>.....>>.>>>>......<<<<.......>>> >.>>>>>>>....	?	GO:0000028 ...	P0A7V3	34389707
6	7acj:i (3.2)	BS02	>7acj:4 (identical to 7abz:4, 7ac7:4, 7acr:4, 6q98:4, 6q9a:4, 8vs9:TMRN, 8vsa:TMRN) ggggcugauucuggauucgacgggauuugcgaaacccaaggugcaugccg aggggcgguuggccucguaaaaagccgcaaaaaauagucgcaaacgacga aaacuacgcuuuagcagcuuaauaaccugcuuagagcccucucucccuag ccuccgcucuuaggacggggaucaagagaggucaaacccaaaagagaucg cguggaagcccugccugggguugaagcguuaaaacuuaaucaggcuaguu uguuaguggcguguccguccgcagcuggcaagcgaauguaaagacugacu aagcauguaguaccgaggauguaggaauuucggacgcggguucaacuccc gccagcuccacca <<<<<<<..............<<<.<<<.......<<..<<...<<...( .....<<<<......).......>>>>....................... .......<<<...<<.............>>..>..>>.<<<<<<<<<<.. .<<....(...>>...>>>>....>>>>>>..............)..... <<.....<<<...((...>>>.....>>..............))...... <<...........((.............>>................)).. ....>>......>>..>>.....>>.>>>>......<<<<.......>>> >.>>>>>>>....	?	GO:0000028 ...	P0A7V8	34389707
7	7acj:j (3.2)	BS02	>7acj:4 (identical to 7abz:4, 7ac7:4, 7acr:4, 6q98:4, 6q9a:4, 8vs9:TMRN, 8vsa:TMRN) ggggcugauucuggauucgacgggauuugcgaaacccaaggugcaugccg aggggcgguuggccucguaaaaagccgcaaaaaauagucgcaaacgacga aaacuacgcuuuagcagcuuaauaaccugcuuagagcccucucucccuag ccuccgcucuuaggacggggaucaagagaggucaaacccaaaagagaucg cguggaagcccugccugggguugaagcguuaaaacuuaaucaggcuaguu uguuaguggcguguccguccgcagcuggcaagcgaauguaaagacugacu aagcauguaguaccgaggauguaggaauuucggacgcggguucaacuccc gccagcuccacca <<<<<<<..............<<<.<<<.......<<..<<...<<...( .....<<<<......).......>>>>....................... .......<<<...<<.............>>..>..>>.<<<<<<<<<<.. .<<....(...>>...>>>>....>>>>>>..............)..... <<.....<<<...((...>>>.....>>..............))...... <<...........((.............>>................)).. ....>>......>>..>>.....>>.>>>>......<<<<.......>>> >.>>>>>>>....	?	GO:0000028 ...	P0A7W1	34389707
8	7acj:r (3.2)	BS02	>7acj:4 (identical to 7abz:4, 7ac7:4, 7acr:4, 6q98:4, 6q9a:4, 8vs9:TMRN, 8vsa:TMRN) ggggcugauucuggauucgacgggauuugcgaaacccaaggugcaugccg aggggcgguuggccucguaaaaagccgcaaaaaauagucgcaaacgacga aaacuacgcuuuagcagcuuaauaaccugcuuagagcccucucucccuag ccuccgcucuuaggacggggaucaagagaggucaaacccaaaagagaucg cguggaagcccugccugggguugaagcguuaaaacuuaaucaggcuaguu uguuaguggcguguccguccgcagcuggcaagcgaauguaaagacugacu aagcauguaguaccgaggauguaggaauuucggacgcggguucaacuccc gccagcuccacca <<<<<<<..............<<<.<<<.......<<..<<...<<...( .....<<<<......).......>>>>....................... .......<<<...<<.............>>..>..>>.<<<<<<<<<<.. .<<....(...>>...>>>>....>>>>>>..............)..... <<.....<<<...((...>>>.....>>..............))...... <<...........((.............>>................)).. ....>>......>>..>>.....>>.>>>>......<<<<.......>>> >.>>>>>>>....	?	GO:0000049 ...	P0A7S9	34389707
9	7acj:x (3.2)	BS02	>7acj:4 (identical to 7abz:4, 7ac7:4, 7acr:4, 6q98:4, 6q9a:4, 8vs9:TMRN, 8vsa:TMRN) ggggcugauucuggauucgacgggauuugcgaaacccaaggugcaugccg aggggcgguuggccucguaaaaagccgcaaaaaauagucgcaaacgacga aaacuacgcuuuagcagcuuaauaaccugcuuagagcccucucucccuag ccuccgcucuuaggacggggaucaagagaggucaaacccaaaagagaucg cguggaagcccugccugggguugaagcguuaaaacuuaaucaggcuaguu uguuaguggcguguccguccgcagcuggcaagcgaauguaaagacugacu aagcauguaguaccgaggauguaggaauuucggacgcggguucaacuccc gccagcuccacca <<<<<<<..............<<<.<<<.......<<..<<...<<...( .....<<<<......).......>>>>....................... .......<<<...<<.............>>..>..>>.<<<<<<<<<<.. .<<....(...>>...>>>>....>>>>>>..............)..... <<.....<<<...((...>>>.....>>..............))...... <<...........((.............>>................)).. ....>>......>>..>>.....>>.>>>>......<<<<.......>>> >.>>>>>>>....	?	GO:0000028 ...	P0A7U3	34389707