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BioLiP
Download all results in tab-seperated text for 19 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (resolution)
    Site
    #
    RNA
    sequence
    EC
    number
    GO
    terms
    UniProt PubMed Binding
    affinity
    1 6lqs:3C
    (3.8)
    BS01 >6lqs:3A
    gucgacguacuucauaggaucauuucuauaggaaucgucacucuuugacu
    cuucaaaagagccacugaauccaacuugguugaugagucccauaaccuuu
    guaccccagagugagaaauagcuuggccgaaucgguucggccacuauauu
    gccguugcauuuuauggcgcgaugaucuugacccauccuaucuucgaaga
    uagggggguggguacaaauggcagucugacaagu
    ..................................................
    .......................<<<<<.................<<<<<
    <<..<<....<............<<<<<<<<<..>>>>>>>>>.......
    <<<............>>>........>...<<<..<<<<<<<<<..>>>>
    >>>>>.>>>.>>.>>>>>.>>........>>>>>
    2.1.1.- GO:0000451 ... P15646 32943522
    2 6lqs:3D
    (3.8)
    BS01 >6lqs:3A
    gucgacguacuucauaggaucauuucuauaggaaucgucacucuuugacu
    cuucaaaagagccacugaauccaacuugguugaugagucccauaaccuuu
    guaccccagagugagaaauagcuuggccgaaucgguucggccacuauauu
    gccguugcauuuuauggcgcgaugaucuugacccauccuaucuucgaaga
    uagggggguggguacaaauggcagucugacaagu
    ..................................................
    .......................<<<<<.................<<<<<
    <<..<<....<............<<<<<<<<<..>>>>>>>>>.......
    <<<............>>>........>...<<<..<<<<<<<<<..>>>>
    >>>>>.>>>.>>.>>>>>.>>........>>>>>
    ? GO:0000154 ... Q12460 32943522
    3 6lqs:3E
    (3.8)
    BS01 >6lqs:3A
    gucgacguacuucauaggaucauuucuauaggaaucgucacucuuugacu
    cuucaaaagagccacugaauccaacuugguugaugagucccauaaccuuu
    guaccccagagugagaaauagcuuggccgaaucgguucggccacuauauu
    gccguugcauuuuauggcgcgaugaucuugacccauccuaucuucgaaga
    uagggggguggguacaaauggcagucugacaagu
    ..................................................
    .......................<<<<<.................<<<<<
    <<..<<....<............<<<<<<<<<..>>>>>>>>>.......
    <<<............>>>........>...<<<..<<<<<<<<<..>>>>
    >>>>>.>>>.>>.>>>>>.>>........>>>>>
    ? GO:0000447 ... Q12499 32943522
    4 6lqs:3F
    (3.8)
    BS01 >6lqs:3A
    gucgacguacuucauaggaucauuucuauaggaaucgucacucuuugacu
    cuucaaaagagccacugaauccaacuugguugaugagucccauaaccuuu
    guaccccagagugagaaauagcuuggccgaaucgguucggccacuauauu
    gccguugcauuuuauggcgcgaugaucuugacccauccuaucuucgaaga
    uagggggguggguacaaauggcagucugacaagu
    ..................................................
    .......................<<<<<.................<<<<<
    <<..<<....<............<<<<<<<<<..>>>>>>>>>.......
    <<<............>>>........>...<<<..<<<<<<<<<..>>>>
    >>>>>.>>>.>>.>>>>>.>>........>>>>>
    ? GO:0000447 ... Q06506 32943522
    5 6lqs:3G
    (3.8)
    BS01 >6lqs:3A
    gucgacguacuucauaggaucauuucuauaggaaucgucacucuuugacu
    cuucaaaagagccacugaauccaacuugguugaugagucccauaaccuuu
    guaccccagagugagaaauagcuuggccgaaucgguucggccacuauauu
    gccguugcauuuuauggcgcgaugaucuugacccauccuaucuucgaaga
    uagggggguggguacaaauggcagucugacaagu
    ..................................................
    .......................<<<<<.................<<<<<
    <<..<<....<............<<<<<<<<<..>>>>>>>>>.......
    <<<............>>>........>...<<<..<<<<<<<<<..>>>>
    >>>>>.>>>.>>.>>>>>.>>........>>>>>
    ? GO:0000245 ... P39990 32943522
    6 6lqs:3H
    (3.8)
    BS01 >6lqs:3A
    gucgacguacuucauaggaucauuucuauaggaaucgucacucuuugacu
    cuucaaaagagccacugaauccaacuugguugaugagucccauaaccuuu
    guaccccagagugagaaauagcuuggccgaaucgguucggccacuauauu
    gccguugcauuuuauggcgcgaugaucuugacccauccuaucuucgaaga
    uagggggguggguacaaauggcagucugacaagu
    ..................................................
    .......................<<<<<.................<<<<<
    <<..<<....<............<<<<<<<<<..>>>>>>>>>.......
    <<<............>>>........>...<<<..<<<<<<<<<..>>>>
    >>>>>.>>>.>>.>>>>>.>>........>>>>>
    ? GO:0000245 ... P39990 32943522
    7 6lqs:5C
    (3.8)
    BS01 >6lqs:3A
    gucgacguacuucauaggaucauuucuauaggaaucgucacucuuugacu
    cuucaaaagagccacugaauccaacuugguugaugagucccauaaccuuu
    guaccccagagugagaaauagcuuggccgaaucgguucggccacuauauu
    gccguugcauuuuauggcgcgaugaucuugacccauccuaucuucgaaga
    uagggggguggguacaaauggcagucugacaagu
    ..................................................
    .......................<<<<<.................<<<<<
    <<..<<....<............<<<<<<<<<..>>>>>>>>>.......
    <<<............>>>........>...<<<..<<<<<<<<<..>>>>
    >>>>>.>>>.>>.>>>>>.>>........>>>>>
    ? GO:0000447 ... P40055 32943522
    8 6lqs:5D
    (3.8)
    BS01 >6lqs:3A
    gucgacguacuucauaggaucauuucuauaggaaucgucacucuuugacu
    cuucaaaagagccacugaauccaacuugguugaugagucccauaaccuuu
    guaccccagagugagaaauagcuuggccgaaucgguucggccacuauauu
    gccguugcauuuuauggcgcgaugaucuugacccauccuaucuucgaaga
    uagggggguggguacaaauggcagucugacaagu
    ..................................................
    .......................<<<<<.................<<<<<
    <<..<<....<............<<<<<<<<<..>>>>>>>>>.......
    <<<............>>>........>...<<<..<<<<<<<<<..>>>>
    >>>>>.>>>.>>.>>>>>.>>........>>>>>
    ? GO:0000447 ... P34247 32943522
    9 6lqs:5F
    (3.8)
    BS01 >6lqs:3A
    gucgacguacuucauaggaucauuucuauaggaaucgucacucuuugacu
    cuucaaaagagccacugaauccaacuugguugaugagucccauaaccuuu
    guaccccagagugagaaauagcuuggccgaaucgguucggccacuauauu
    gccguugcauuuuauggcgcgaugaucuugacccauccuaucuucgaaga
    uagggggguggguacaaauggcagucugacaagu
    ..................................................
    .......................<<<<<.................<<<<<
    <<..<<....<............<<<<<<<<<..>>>>>>>>>.......
    <<<............>>>........>...<<<..<<<<<<<<<..>>>>
    >>>>>.>>>.>>.>>>>>.>>........>>>>>
    ? GO:0003723 ... P32899 32943522
    10 6lqs:5H
    (3.8)
    BS01 >6lqs:3A
    gucgacguacuucauaggaucauuucuauaggaaucgucacucuuugacu
    cuucaaaagagccacugaauccaacuugguugaugagucccauaaccuuu
    guaccccagagugagaaauagcuuggccgaaucgguucggccacuauauu
    gccguugcauuuuauggcgcgaugaucuugacccauccuaucuucgaaga
    uagggggguggguacaaauggcagucugacaagu
    ..................................................
    .......................<<<<<.................<<<<<
    <<..<<....<............<<<<<<<<<..>>>>>>>>>.......
    <<<............>>>........>...<<<..<<<<<<<<<..>>>>
    >>>>>.>>>.>>.>>>>>.>>........>>>>>
    ? GO:0000447 ... Q12136 32943522
    11 6lqs:5I
    (3.8)
    BS01 >6lqs:3A
    gucgacguacuucauaggaucauuucuauaggaaucgucacucuuugacu
    cuucaaaagagccacugaauccaacuugguugaugagucccauaaccuuu
    guaccccagagugagaaauagcuuggccgaaucgguucggccacuauauu
    gccguugcauuuuauggcgcgaugaucuugacccauccuaucuucgaaga
    uagggggguggguacaaauggcagucugacaagu
    ..................................................
    .......................<<<<<.................<<<<<
    <<..<<....<............<<<<<<<<<..>>>>>>>>>.......
    <<<............>>>........>...<<<..<<<<<<<<<..>>>>
    >>>>>.>>>.>>.>>>>>.>>........>>>>>
    ? GO:0000462 ... P33750 32943522
    12 6lqs:5J
    (3.8)
    BS01 >6lqs:3A
    gucgacguacuucauaggaucauuucuauaggaaucgucacucuuugacu
    cuucaaaagagccacugaauccaacuugguugaugagucccauaaccuuu
    guaccccagagugagaaauagcuuggccgaaucgguucggccacuauauu
    gccguugcauuuuauggcgcgaugaucuugacccauccuaucuucgaaga
    uagggggguggguacaaauggcagucugacaagu
    ..................................................
    .......................<<<<<.................<<<<<
    <<..<<....<............<<<<<<<<<..>>>>>>>>>.......
    <<<............>>>........>...<<<..<<<<<<<<<..>>>>
    >>>>>.>>>.>>.>>>>>.>>........>>>>>
    ? GO:0000447 ... Q12035 32943522
    13 6lqs:AE
    (3.8)
    BS01 >6lqs:3A
    gucgacguacuucauaggaucauuucuauaggaaucgucacucuuugacu
    cuucaaaagagccacugaauccaacuugguugaugagucccauaaccuuu
    guaccccagagugagaaauagcuuggccgaaucgguucggccacuauauu
    gccguugcauuuuauggcgcgaugaucuugacccauccuaucuucgaaga
    uagggggguggguacaaauggcagucugacaagu
    ..................................................
    .......................<<<<<.................<<<<<
    <<..<<....<............<<<<<<<<<..>>>>>>>>>.......
    <<<............>>>........>...<<<..<<<<<<<<<..>>>>
    >>>>>.>>>.>>.>>>>>.>>........>>>>>
    ? GO:0000447 ... P42945 32943522
    14 6lqs:AG
    (3.8)
    BS01 >6lqs:3A
    gucgacguacuucauaggaucauuucuauaggaaucgucacucuuugacu
    cuucaaaagagccacugaauccaacuugguugaugagucccauaaccuuu
    guaccccagagugagaaauagcuuggccgaaucgguucggccacuauauu
    gccguugcauuuuauggcgcgaugaucuugacccauccuaucuucgaaga
    uagggggguggguacaaauggcagucugacaagu
    ..................................................
    .......................<<<<<.................<<<<<
    <<..<<....<............<<<<<<<<<..>>>>>>>>>.......
    <<<............>>>........>...<<<..<<<<<<<<<..>>>>
    >>>>>.>>>.>>.>>>>>.>>........>>>>>
    ? GO:0000462 ... Q02931 32943522
    15 6lqs:B1
    (3.8)
    BS01 >6lqs:3A
    gucgacguacuucauaggaucauuucuauaggaaucgucacucuuugacu
    cuucaaaagagccacugaauccaacuugguugaugagucccauaaccuuu
    guaccccagagugagaaauagcuuggccgaaucgguucggccacuauauu
    gccguugcauuuuauggcgcgaugaucuugacccauccuaucuucgaaga
    uagggggguggguacaaauggcagucugacaagu
    ..................................................
    .......................<<<<<.................<<<<<
    <<..<<....<............<<<<<<<<<..>>>>>>>>>.......
    <<<............>>>........>...<<<..<<<<<<<<<..>>>>
    >>>>>.>>>.>>.>>>>>.>>........>>>>>
    ? GO:0000028 ... P25635 32943522
    16 6lqs:BE
    (3.8)
    BS01 >6lqs:3A
    gucgacguacuucauaggaucauuucuauaggaaucgucacucuuugacu
    cuucaaaagagccacugaauccaacuugguugaugagucccauaaccuuu
    guaccccagagugagaaauagcuuggccgaaucgguucggccacuauauu
    gccguugcauuuuauggcgcgaugaucuugacccauccuaucuucgaaga
    uagggggguggguacaaauggcagucugacaagu
    ..................................................
    .......................<<<<<.................<<<<<
    <<..<<....<............<<<<<<<<<..>>>>>>>>>.......
    <<<............>>>........>...<<<..<<<<<<<<<..>>>>
    >>>>>.>>>.>>.>>>>>.>>........>>>>>
    ? GO:0003674 ... Q06078 32943522
    17 6lqs:RJ
    (3.8)
    BS01 >6lqs:3A
    gucgacguacuucauaggaucauuucuauaggaaucgucacucuuugacu
    cuucaaaagagccacugaauccaacuugguugaugagucccauaaccuuu
    guaccccagagugagaaauagcuuggccgaaucgguucggccacuauauu
    gccguugcauuuuauggcgcgaugaucuugacccauccuaucuucgaaga
    uagggggguggguacaaauggcagucugacaagu
    ..................................................
    .......................<<<<<.................<<<<<
    <<..<<....<............<<<<<<<<<..>>>>>>>>>.......
    <<<............>>>........>...<<<..<<<<<<<<<..>>>>
    >>>>>.>>>.>>.>>>>>.>>........>>>>>
    ? GO:0000462 ... Q08965 32943522
    18 6lqs:RN
    (3.8)
    BS01 >6lqs:3A
    gucgacguacuucauaggaucauuucuauaggaaucgucacucuuugacu
    cuucaaaagagccacugaauccaacuugguugaugagucccauaaccuuu
    guaccccagagugagaaauagcuuggccgaaucgguucggccacuauauu
    gccguugcauuuuauggcgcgaugaucuugacccauccuaucuucgaaga
    uagggggguggguacaaauggcagucugacaagu
    ..................................................
    .......................<<<<<.................<<<<<
    <<..<<....<............<<<<<<<<<..>>>>>>>>>.......
    <<<............>>>........>...<<<..<<<<<<<<<..>>>>
    >>>>>.>>>.>>.>>>>>.>>........>>>>>
    ? GO:0000028 ... Q99207 32943522
    19 6lqs:RW
    (3.8)
    BS01 >6lqs:3A
    gucgacguacuucauaggaucauuucuauaggaaucgucacucuuugacu
    cuucaaaagagccacugaauccaacuugguugaugagucccauaaccuuu
    guaccccagagugagaaauagcuuggccgaaucgguucggccacuauauu
    gccguugcauuuuauggcgcgaugaucuugacccauccuaucuucgaaga
    uagggggguggguacaaauggcagucugacaagu
    ..................................................
    .......................<<<<<.................<<<<<
    <<..<<....<............<<<<<<<<<..>>>>>>>>>.......
    <<<............>>>........>...<<<..<<<<<<<<<..>>>>
    >>>>>.>>>.>>.>>>>>.>>........>>>>>
    ? GO:0003674 ... P40470 32943522

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218