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BioLiP
Download all results in tab-seperated text for 1 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		RNA
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    1 5kps:12
    (3.9)    		 BS02 >5kps:32 (identical to 8a3l:V, 5afi:v, 5e7k:2K, 5e7k:2L, 2fmt:C, 2fmt:D, 8ifb:6, 8ifc:6, 3j9y:v, 3j9z:S6, 3ja1:S2, 3jcj:v, 3jcn:v, 5kpv:32, 5kpw:32, 5kpx:32, 5l3p:x, 7lh5:CV, 5lza:v, 5lzb:v, 5lzc:v, 5lzd:v, 5lze:v, 5lzf:v, 5me0:X, 5me1:X, 7nbu:V, 6o7k:v, 6o9k:y, 8phj:8, 7pjs:v, 7pjt:v, 7pju:v, 7pjv:v, 7pjx:v, 7pjy:v, 7pjz:v, 3qsy:D, 4v4j:z, 4v6n:BD, 4v6o:AD, 4v6p:AD, 4v6q:AD, 4v6r:AD, 4v6s:BC, 4v6v:A3, 4v7m:AX, 5wdt:v, 5wdt:w, 5we4:v, 5we4:w, 5we6:v, 5we6:w, 5wf0:v, 5wf0:w, 5wfk:v, 5wfk:w, 5wfs:v, 5wfs:w, 7y7c:Z, 7y7d:Z, 7y7e:Z, 7y7f:Z, 7y7g:Z, 7y7h:Z, 5zeb:v, 5zep:w, 6ztj:AW, 6ztl:AW, 6ztm:AW, 6ztn:AW, 6zto:AW, 6ztp:AW, 6zu1:AW)
    cgcgggguggagcagccugguagcucgucgggcucauaacccgaagaucg
ucgguucaaauccggcccccgcaacca
.<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<
<<<<.......>>>>>>>>>>>.....
    		 ? GO:0000028 ... P02359 27434674
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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