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BioLiP
Download all results in tab-seperated text for 18 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7zqd:3 (2.97) BS01 CLA N/A GO:0009765 ... N/A 36229605
    2 7zqd:3 (2.97) BS02 CLA N/A GO:0009765 ... N/A 36229605
    3 7zqd:3 (2.97) BS03 CLA N/A GO:0009765 ... N/A 36229605
    4 7zqd:3 (2.97) BS04 CLA N/A GO:0009765 ... N/A 36229605
    5 7zqd:3 (2.97) BS05 CLA N/A GO:0009765 ... N/A 36229605
    6 7zqd:3 (2.97) BS06 CLA N/A GO:0009765 ... N/A 36229605
    7 7zqd:3 (2.97) BS07 CLA N/A GO:0009765 ... N/A 36229605
    8 7zqd:3 (2.97) BS08 CLA N/A GO:0009765 ... N/A 36229605
    9 7zqd:3 (2.97) BS09 CHL N/A GO:0009765 ... N/A 36229605
    10 7zqd:3 (2.97) BS10 CLA N/A GO:0009765 ... N/A 36229605
    11 7zqd:3 (2.97) BS11 CLA N/A GO:0009765 ... N/A 36229605
    12 7zqd:3 (2.97) BS12 CLA N/A GO:0009765 ... N/A 36229605
    13 7zqd:3 (2.97) BS13 CLA N/A GO:0009765 ... N/A 36229605
    14 7zqd:3 (2.97) BS14 CLA N/A GO:0009765 ... N/A 36229605
    15 7zqd:3 (2.97) BS15 CLA N/A GO:0009765 ... N/A 36229605
    16 7zqd:3 (2.97) BS16 CLA N/A GO:0009765 ... N/A 36229605
    17 7zqd:3 (2.97) BS17 CHL N/A GO:0009765 ... N/A 36229605
    18 7zqd:5 (2.97) BS01 CLA ? GO:0009416 ... Q75VY8 36229605
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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