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BioLiP
Download all results in tab-seperated text for 64 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6vpv:0 (2.7) BS04 CLA ? GO:0009522 ... K9Z7Y0 34435952
    2 6vpv:0 (2.7) BS05 CLA ? GO:0009522 ... K9Z7Y0 34435952
    3 6vpv:1 (2.7) BS46 CLA 1.97.1.12 GO:0000287 ... K9Z0B2 34435952
    4 6vpv:1 (2.7) BS47 CLA 1.97.1.12 GO:0000287 ... K9Z0B2 34435952
    5 6vpv:1 (2.7) BS48 CLA 1.97.1.12 GO:0000287 ... K9Z0B2 34435952
    6 6vpv:1 (2.7) BS49 CLA 1.97.1.12 GO:0000287 ... K9Z0B2 34435952
    7 6vpv:2 (2.7) BS01 CL0 1.97.1.12 GO:0000287 ... K9Z2J7 34435952
    8 6vpv:2 (2.7) BS02 CLA 1.97.1.12 GO:0000287 ... K9Z2J7 34435952
    9 6vpv:2 (2.7) BS03 CLA 1.97.1.12 GO:0000287 ... K9Z2J7 34435952
    10 6vpv:2 (2.7) BS04 CLA 1.97.1.12 GO:0000287 ... K9Z2J7 34435952
    11 6vpv:2 (2.7) BS05 CLA 1.97.1.12 GO:0000287 ... K9Z2J7 34435952
    12 6vpv:2 (2.7) BS06 CLA 1.97.1.12 GO:0000287 ... K9Z2J7 34435952
    13 6vpv:2 (2.7) BS07 SF4 1.97.1.12 GO:0000287 ... K9Z2J7 34435952
    14 6vpv:2 (2.7) BS08 CLA 1.97.1.12 GO:0000287 ... K9Z2J7 34435952
    15 6vpv:2 (2.7) BS09 CLA 1.97.1.12 GO:0000287 ... K9Z2J7 34435952
    16 6vpv:2 (2.7) BS10 CLA 1.97.1.12 GO:0000287 ... K9Z2J7 34435952
    17 6vpv:2 (2.7) BS11 CLA 1.97.1.12 GO:0000287 ... K9Z2J7 34435952
    18 6vpv:2 (2.7) BS12 CLA 1.97.1.12 GO:0000287 ... K9Z2J7 34435952
    19 6vpv:2 (2.7) BS13 CLA 1.97.1.12 GO:0000287 ... K9Z2J7 34435952
    20 6vpv:2 (2.7) BS14 CLA 1.97.1.12 GO:0000287 ... K9Z2J7 34435952
    21 6vpv:2 (2.7) BS15 CLA 1.97.1.12 GO:0000287 ... K9Z2J7 34435952
    22 6vpv:2 (2.7) BS16 CLA 1.97.1.12 GO:0000287 ... K9Z2J7 34435952
    23 6vpv:2 (2.7) BS17 CLA 1.97.1.12 GO:0000287 ... K9Z2J7 34435952
    24 6vpv:2 (2.7) BS18 CLA 1.97.1.12 GO:0000287 ... K9Z2J7 34435952
    25 6vpv:2 (2.7) BS19 CLA 1.97.1.12 GO:0000287 ... K9Z2J7 34435952
    26 6vpv:2 (2.7) BS20 CLA 1.97.1.12 GO:0000287 ... K9Z2J7 34435952
    27 6vpv:2 (2.7) BS21 CLA 1.97.1.12 GO:0000287 ... K9Z2J7 34435952
    28 6vpv:2 (2.7) BS22 CLA 1.97.1.12 GO:0000287 ... K9Z2J7 34435952
    29 6vpv:2 (2.7) BS23 CLA 1.97.1.12 GO:0000287 ... K9Z2J7 34435952
    30 6vpv:2 (2.7) BS24 CLA 1.97.1.12 GO:0000287 ... K9Z2J7 34435952
    31 6vpv:2 (2.7) BS25 CLA 1.97.1.12 GO:0000287 ... K9Z2J7 34435952
    32 6vpv:2 (2.7) BS26 CLA 1.97.1.12 GO:0000287 ... K9Z2J7 34435952
    33 6vpv:2 (2.7) BS27 CLA 1.97.1.12 GO:0000287 ... K9Z2J7 34435952
    34 6vpv:2 (2.7) BS28 CLA 1.97.1.12 GO:0000287 ... K9Z2J7 34435952
    35 6vpv:2 (2.7) BS29 CLA 1.97.1.12 GO:0000287 ... K9Z2J7 34435952
    36 6vpv:2 (2.7) BS30 CLA 1.97.1.12 GO:0000287 ... K9Z2J7 34435952
    37 6vpv:2 (2.7) BS31 CLA 1.97.1.12 GO:0000287 ... K9Z2J7 34435952
    38 6vpv:2 (2.7) BS32 CLA 1.97.1.12 GO:0000287 ... K9Z2J7 34435952
    39 6vpv:2 (2.7) BS33 CLA 1.97.1.12 GO:0000287 ... K9Z2J7 34435952
    40 6vpv:2 (2.7) BS34 CLA 1.97.1.12 GO:0000287 ... K9Z2J7 34435952
    41 6vpv:2 (2.7) BS35 CLA 1.97.1.12 GO:0000287 ... K9Z2J7 34435952
    42 6vpv:2 (2.7) BS36 CLA 1.97.1.12 GO:0000287 ... K9Z2J7 34435952
    43 6vpv:2 (2.7) BS37 CLA 1.97.1.12 GO:0000287 ... K9Z2J7 34435952
    44 6vpv:2 (2.7) BS38 CLA 1.97.1.12 GO:0000287 ... K9Z2J7 34435952
    45 6vpv:2 (2.7) BS39 CLA 1.97.1.12 GO:0000287 ... K9Z2J7 34435952
    46 6vpv:2 (2.7) BS40 CLA 1.97.1.12 GO:0000287 ... K9Z2J7 34435952
    47 6vpv:2 (2.7) BS41 CLA 1.97.1.12 GO:0000287 ... K9Z2J7 34435952
    48 6vpv:2 (2.7) BS42 CLA 1.97.1.12 GO:0000287 ... K9Z2J7 34435952
    49 6vpv:2 (2.7) BS43 CLA 1.97.1.12 GO:0000287 ... K9Z2J7 34435952
    50 6vpv:2 (2.7) BS44 CLA 1.97.1.12 GO:0000287 ... K9Z2J7 34435952
    51 6vpv:2 (2.7) BS45 CLA 1.97.1.12 GO:0000287 ... K9Z2J7 34435952
    52 6vpv:2 (2.7) BS46 PQN 1.97.1.12 GO:0000287 ... K9Z2J7 34435952
    53 6vpv:2 (2.7) BS47 CLA 1.97.1.12 GO:0000287 ... K9Z2J7 34435952
    54 6vpv:2 (2.7) BS48 CLA 1.97.1.12 GO:0000287 ... K9Z2J7 34435952
    55 6vpv:2 (2.7) BS49 CLA 1.97.1.12 GO:0000287 ... K9Z2J7 34435952
    56 6vpv:2 (2.7) BS50 CLA 1.97.1.12 GO:0000287 ... K9Z2J7 34435952
    57 6vpv:2 (2.7) BS51 CLA 1.97.1.12 GO:0000287 ... K9Z2J7 34435952
    58 6vpv:2 (2.7) BS52 CLA 1.97.1.12 GO:0000287 ... K9Z2J7 34435952
    59 6vpv:6 (2.7) BS02 CLA ? GO:0009522 ... K9YZN5 34435952
    60 6vpv:6 (2.7) BS03 CLA ? GO:0009522 ... K9YZN5 34435952
    61 6vpv:7 (2.7) BS01 CLA ? GO:0009522 ... K9Z9J3 34435952
    62 6vpv:7 (2.7) BS02 CLA ? GO:0009522 ... K9Z9J3 34435952
    63 6vpv:8 (2.7) BS02 CLA ? GO:0009522 ... K9Z1F7 34435952
    64 6vpv:z (2.7) BS01 CLA ? GO:0009522 ... K9Z6P4 34435952
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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