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BioLiP
Download all results in tab-seperated text for 12 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		RNA
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    1 8rm5:21
    (6.9)    		 BS01 >8rm5:2 (identical to 8r09:2, 8r0b:2)
    cgcuucucggccaaguguaguaucuguucuuaucaguuuaauaucugaug
gauuuuuggagcaucgaccugguauugcaguaccuccaggaacggugc
................................<<<<........>>>>..
..........<<<<<<.<<<<<.............>>>>>..>>>>>>
    		 ? GO:0000243 ... P62314 38778104
    2 8rm5:22
    (6.9)    		 BS01 >8rm5:2 (identical to 8r09:2, 8r0b:2)
    cgcuucucggccaaguguaguaucuguucuuaucaguuuaauaucugaug
gauuuuuggagcaucgaccugguauugcaguaccuccaggaacggugc
................................<<<<........>>>>..
..........<<<<<<.<<<<<.............>>>>>..>>>>>>
    		 ? GO:0000245 ... P62316 38778104
    3 8rm5:23
    (6.9)    		 BS01 >8rm5:2 (identical to 8r09:2, 8r0b:2)
    cgcuucucggccaaguguaguaucuguucuuaucaguuuaauaucugaug
gauuuuuggagcaucgaccugguauugcaguaccuccaggaacggugc
................................<<<<........>>>>..
..........<<<<<<.<<<<<.............>>>>>..>>>>>>
    		 ? GO:0000243 ... P62318 38778104
    4 8rm5:2B
    (6.9)    		 BS01 >8rm5:2 (identical to 8r09:2, 8r0b:2)
    cgcuucucggccaaguguaguaucuguucuuaucaguuuaauaucugaug
gauuuuuggagcaucgaccugguauugcaguaccuccaggaacggugc
................................<<<<........>>>>..
..........<<<<<<.<<<<<.............>>>>>..>>>>>>
    		 ? GO:0000398 ... P08579 38778104
    5 8rm5:2b
    (6.9)    		 BS01 >8rm5:2 (identical to 8r09:2, 8r0b:2)
    cgcuucucggccaaguguaguaucuguucuuaucaguuuaauaucugaug
gauuuuuggagcaucgaccugguauugcaguaccuccaggaacggugc
................................<<<<........>>>>..
..........<<<<<<.<<<<<.............>>>>>..>>>>>>
    		 ? GO:0000387 ... P14678 38778104
    6 8rm5:2e
    (6.9)    		 BS01 >8rm5:2 (identical to 8r09:2, 8r0b:2)
    cgcuucucggccaaguguaguaucuguucuuaucaguuuaauaucugaug
gauuuuuggagcaucgaccugguauugcaguaccuccaggaacggugc
................................<<<<........>>>>..
..........<<<<<<.<<<<<.............>>>>>..>>>>>>
    		 ? GO:0000245 ... P62304 38778104
    7 8rm5:2f
    (6.9)    		 BS01 >8rm5:2 (identical to 8r09:2, 8r0b:2)
    cgcuucucggccaaguguaguaucuguucuuaucaguuuaauaucugaug
gauuuuuggagcaucgaccugguauugcaguaccuccaggaacggugc
................................<<<<........>>>>..
..........<<<<<<.<<<<<.............>>>>>..>>>>>>
    		 ? GO:0000387 ... P62306 38778104
    8 8rm5:2g
    (6.9)    		 BS01 >8rm5:2 (identical to 8r09:2, 8r0b:2)
    cgcuucucggccaaguguaguaucuguucuuaucaguuuaauaucugaug
gauuuuuggagcaucgaccugguauugcaguaccuccaggaacggugc
................................<<<<........>>>>..
..........<<<<<<.<<<<<.............>>>>>..>>>>>>
    		 ? GO:0000245 ... P62308 38778104
    9 8rm5:8
    (6.9)    		 BS01 >8rm5:2 (identical to 8r09:2, 8r0b:2)
    cgcuucucggccaaguguaguaucuguucuuaucaguuuaauaucugaug
gauuuuuggagcaucgaccugguauugcaguaccuccaggaacggugc
................................<<<<........>>>>..
..........<<<<<<.<<<<<.............>>>>>..>>>>>>
    		 ? GO:0000245 ... Q15428 38778104
    10 8rm5:9
    (6.9)    		 BS01 >8rm5:2 (identical to 8r09:2, 8r0b:2)
    cgcuucucggccaaguguaguaucuguucuuaucaguuuaauaucugaug
gauuuuuggagcaucgaccugguauugcaguaccuccaggaacggugc
................................<<<<........>>>>..
..........<<<<<<.<<<<<.............>>>>>..>>>>>>
    		 ? GO:0000375 ... Q12874 38778104
    11 8rm5:B1
    (6.9)    		 BS02 >8rm5:2 (identical to 8r09:2, 8r0b:2)
    cgcuucucggccaaguguaguaucuguucuuaucaguuuaauaucugaug
gauuuuuggagcaucgaccugguauugcaguaccuccaggaacggugc
................................<<<<........>>>>..
..........<<<<<<.<<<<<.............>>>>>..>>>>>>
    		 ? GO:0000245 ... O75533 38778104
    12 8rm5:B6
    (6.9)    		 BS01 >8rm5:2 (identical to 8r09:2, 8r0b:2)
    cgcuucucggccaaguguaguaucuguucuuaucaguuuaauaucugaug
gauuuuuggagcaucgaccugguauugcaguaccuccaggaacggugc
................................<<<<........>>>>..
..........<<<<<<.<<<<<.............>>>>>..>>>>>>
    		 ? GO:0000398 ... Q9Y3B4 38778104
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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