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BioLiP
Download all results in tab-seperated text for 11 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		RNA
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    1 8r0a:21
    (5.8)    		 BS01 >8r0a:2 (identical to 8r08:2)
    cgcuucucggcaaguguaguaucuguucuuaucaguuuaauaucugaugg
auuuuuggagcaucgaccugguauugcaguaccuccaggaacggugc
..............................<<<<<.<....>.>>>>>..
.........<<<<<<.<<<<<.............>>>>>..>>>>>>
    		 ? GO:0000243 ... P62314 38778104
    2 8r0a:22
    (5.8)    		 BS01 >8r0a:2 (identical to 8r08:2)
    cgcuucucggcaaguguaguaucuguucuuaucaguuuaauaucugaugg
auuuuuggagcaucgaccugguauugcaguaccuccaggaacggugc
..............................<<<<<.<....>.>>>>>..
.........<<<<<<.<<<<<.............>>>>>..>>>>>>
    		 ? GO:0000245 ... P62316 38778104
    3 8r0a:23
    (5.8)    		 BS01 >8r0a:2 (identical to 8r08:2)
    cgcuucucggcaaguguaguaucuguucuuaucaguuuaauaucugaugg
auuuuuggagcaucgaccugguauugcaguaccuccaggaacggugc
..............................<<<<<.<....>.>>>>>..
.........<<<<<<.<<<<<.............>>>>>..>>>>>>
    		 ? GO:0000243 ... P62318 38778104
    4 8r0a:2B
    (5.8)    		 BS01 >8r0a:2 (identical to 8r08:2)
    cgcuucucggcaaguguaguaucuguucuuaucaguuuaauaucugaugg
auuuuuggagcaucgaccugguauugcaguaccuccaggaacggugc
..............................<<<<<.<....>.>>>>>..
.........<<<<<<.<<<<<.............>>>>>..>>>>>>
    		 ? GO:0000398 ... P08579 38778104
    5 8r0a:2e
    (5.8)    		 BS01 >8r0a:2 (identical to 8r08:2)
    cgcuucucggcaaguguaguaucuguucuuaucaguuuaauaucugaugg
auuuuuggagcaucgaccugguauugcaguaccuccaggaacggugc
..............................<<<<<.<....>.>>>>>..
.........<<<<<<.<<<<<.............>>>>>..>>>>>>
    		 ? GO:0000245 ... P62304 38778104
    6 8r0a:2f
    (5.8)    		 BS01 >8r0a:2 (identical to 8r08:2)
    cgcuucucggcaaguguaguaucuguucuuaucaguuuaauaucugaugg
auuuuuggagcaucgaccugguauugcaguaccuccaggaacggugc
..............................<<<<<.<....>.>>>>>..
.........<<<<<<.<<<<<.............>>>>>..>>>>>>
    		 ? GO:0000387 ... P62306 38778104
    7 8r0a:2g
    (5.8)    		 BS01 >8r0a:2 (identical to 8r08:2)
    cgcuucucggcaaguguaguaucuguucuuaucaguuuaauaucugaugg
auuuuuggagcaucgaccugguauugcaguaccuccaggaacggugc
..............................<<<<<.<....>.>>>>>..
.........<<<<<<.<<<<<.............>>>>>..>>>>>>
    		 ? GO:0000245 ... P62308 38778104
    8 8r0a:8
    (5.8)    		 BS01 >8r0a:2 (identical to 8r08:2)
    cgcuucucggcaaguguaguaucuguucuuaucaguuuaauaucugaugg
auuuuuggagcaucgaccugguauugcaguaccuccaggaacggugc
..............................<<<<<.<....>.>>>>>..
.........<<<<<<.<<<<<.............>>>>>..>>>>>>
    		 ? GO:0000245 ... Q15428 38778104
    9 8r0a:B1
    (5.8)    		 BS02 >8r0a:2 (identical to 8r08:2)
    cgcuucucggcaaguguaguaucuguucuuaucaguuuaauaucugaugg
auuuuuggagcaucgaccugguauugcaguaccuccaggaacggugc
..............................<<<<<.<....>.>>>>>..
.........<<<<<<.<<<<<.............>>>>>..>>>>>>
    		 ? GO:0000245 ... O75533 38778104
    10 8r0a:B2
    (5.8)    		 BS01 >8r0a:2 (identical to 8r08:2)
    cgcuucucggcaaguguaguaucuguucuuaucaguuuaauaucugaugg
auuuuuggagcaucgaccugguauugcaguaccuccaggaacggugc
..............................<<<<<.<....>.>>>>>..
.........<<<<<<.<<<<<.............>>>>>..>>>>>>
    		 ? GO:0000398 ... Q13435 38778104
    11 8r0a:B6
    (5.8)    		 BS01 >8r0a:2 (identical to 8r08:2)
    cgcuucucggcaaguguaguaucuguucuuaucaguuuaauaucugaugg
auuuuuggagcaucgaccugguauugcaguaccuccaggaacggugc
..............................<<<<<.<....>.>>>>>..
.........<<<<<<.<<<<<.............>>>>>..>>>>>>
    		 ? GO:0000398 ... Q9Y3B4 38778104
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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