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BioLiP
Download all results in tab-seperated text for 14 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		RNA
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    1 8c6j:A
    (2.8)    		 BS01 >8c6j:2
    aucgcuucucggccuuuuggcuaagaucaaguguaguaucuguucuuauc
aguuuaauauauauuaaauggauuuuuggagcagggagauggaguccacu
ccacgcaucgaccugguauugcaguaccuccaggaacggugc
..................................................
...<<<<<<..>>>>>>.................<<<<.<<<<.>>>>>>
>>..<<<<<<.<<<<<.............>>>>>..>>>>>>
    		 ? GO:0000244 ... Q6P2Q9 36867703
    2 8c6j:D
    (2.8)    		 BS01 >8c6j:2
    aucgcuucucggccuuuuggcuaagaucaaguguaguaucuguucuuauc
aguuuaauauauauuaaauggauuuuuggagcagggagauggaguccacu
ccacgcaucgaccugguauugcaguaccuccaggaacggugc
..................................................
...<<<<<<..>>>>>>.................<<<<.<<<<.>>>>>>
>>..<<<<<<.<<<<<.............>>>>>..>>>>>>
    		 ? GO:0003014 ... Q9H875 36867703
    3 8c6j:K
    (2.8)    		 BS01 >8c6j:2
    aucgcuucucggccuuuuggcuaagaucaaguguaguaucuguucuuauc
aguuuaauauauauuaaauggauuuuuggagcagggagauggaguccacu
ccacgcaucgaccugguauugcaguaccuccaggaacggugc
..................................................
...<<<<<<..>>>>>>.................<<<<.<<<<.>>>>>>
>>..<<<<<<.<<<<<.............>>>>>..>>>>>>
    		 ? GO:0000122 ... Q13573 36867703
    4 8c6j:O
    (2.8)    		 BS01 >8c6j:2
    aucgcuucucggccuuuuggcuaagaucaaguguaguaucuguucuuauc
aguuuaauauauauuaaauggauuuuuggagcagggagauggaguccacu
ccacgcaucgaccugguauugcaguaccuccaggaacggugc
..................................................
...<<<<<<..>>>>>>.................<<<<.<<<<.>>>>>>
>>..<<<<<<.<<<<<.............>>>>>..>>>>>>
    		 ? GO:0000077 ... Q99459 36867703
    5 8c6j:P
    (2.8)    		 BS01 >8c6j:2
    aucgcuucucggccuuuuggcuaagaucaaguguaguaucuguucuuauc
aguuuaauauauauuaaauggauuuuuggagcagggagauggaguccacu
ccacgcaucgaccugguauugcaguaccuccaggaacggugc
..................................................
...<<<<<<..>>>>>>.................<<<<.<<<<.>>>>>>
>>..<<<<<<.<<<<<.............>>>>>..>>>>>>
    		 ? GO:0000398 ... Q9P013 36867703
    6 8c6j:Y
    (2.8)    		 BS01 >8c6j:2
    aucgcuucucggccuuuuggcuaagaucaaguguaguaucuguucuuauc
aguuuaauauauauuaaauggauuuuuggagcagggagauggaguccacu
ccacgcaucgaccugguauugcaguaccuccaggaacggugc
..................................................
...<<<<<<..>>>>>>.................<<<<.<<<<.>>>>>>
>>..<<<<<<.<<<<<.............>>>>>..>>>>>>
    		 ? GO:0000398 ... P08579 36867703
    7 8c6j:l
    (2.8)    		 BS01 >8c6j:2
    aucgcuucucggccuuuuggcuaagaucaaguguaguaucuguucuuauc
aguuuaauauauauuaaauggauuuuuggagcagggagauggaguccacu
ccacgcaucgaccugguauugcaguaccuccaggaacggugc
..................................................
...<<<<<<..>>>>>>.................<<<<.<<<<.>>>>>>
>>..<<<<<<.<<<<<.............>>>>>..>>>>>>
    		 ? GO:0000243 ... P62314 36867703
    8 8c6j:m
    (2.8)    		 BS01 >8c6j:2
    aucgcuucucggccuuuuggcuaagaucaaguguaguaucuguucuuauc
aguuuaauauauauuaaauggauuuuuggagcagggagauggaguccacu
ccacgcaucgaccugguauugcaguaccuccaggaacggugc
..................................................
...<<<<<<..>>>>>>.................<<<<.<<<<.>>>>>>
>>..<<<<<<.<<<<<.............>>>>>..>>>>>>
    		 ? GO:0000245 ... P62316 36867703
    9 8c6j:n
    (2.8)    		 BS01 >8c6j:2
    aucgcuucucggccuuuuggcuaagaucaaguguaguaucuguucuuauc
aguuuaauauauauuaaauggauuuuuggagcagggagauggaguccacu
ccacgcaucgaccugguauugcaguaccuccaggaacggugc
..................................................
...<<<<<<..>>>>>>.................<<<<.<<<<.>>>>>>
>>..<<<<<<.<<<<<.............>>>>>..>>>>>>
    		 ? GO:0000243 ... P62318 36867703
    10 8c6j:o
    (2.8)    		 BS01 >8c6j:2
    aucgcuucucggccuuuuggcuaagaucaaguguaguaucuguucuuauc
aguuuaauauauauuaaauggauuuuuggagcagggagauggaguccacu
ccacgcaucgaccugguauugcaguaccuccaggaacggugc
..................................................
...<<<<<<..>>>>>>.................<<<<.<<<<.>>>>>>
>>..<<<<<<.<<<<<.............>>>>>..>>>>>>
    		 ? GO:0000398 ... O60508 36867703
    11 8c6j:p
    (2.8)    		 BS01 >8c6j:2
    aucgcuucucggccuuuuggcuaagaucaaguguaguaucuguucuuauc
aguuuaauauauauuaaauggauuuuuggagcagggagauggaguccacu
ccacgcaucgaccugguauugcaguaccuccaggaacggugc
..................................................
...<<<<<<..>>>>>>.................<<<<.<<<<.>>>>>>
>>..<<<<<<.<<<<<.............>>>>>..>>>>>>
    		 ? GO:0000245 ... P62304 36867703
    12 8c6j:q
    (2.8)    		 BS01 >8c6j:2
    aucgcuucucggccuuuuggcuaagaucaaguguaguaucuguucuuauc
aguuuaauauauauuaaauggauuuuuggagcagggagauggaguccacu
ccacgcaucgaccugguauugcaguaccuccaggaacggugc
..................................................
...<<<<<<..>>>>>>.................<<<<.<<<<.>>>>>>
>>..<<<<<<.<<<<<.............>>>>>..>>>>>>
    		 ? GO:0000387 ... P62306 36867703
    13 8c6j:r
    (2.8)    		 BS01 >8c6j:2
    aucgcuucucggccuuuuggcuaagaucaaguguaguaucuguucuuauc
aguuuaauauauauuaaauggauuuuuggagcagggagauggaguccacu
ccacgcaucgaccugguauugcaguaccuccaggaacggugc
..................................................
...<<<<<<..>>>>>>.................<<<<.<<<<.>>>>>>
>>..<<<<<<.<<<<<.............>>>>>..>>>>>>
    		 ? GO:0000245 ... P62308 36867703
    14 8c6j:y
    (2.8)    		 BS01 >8c6j:2
    aucgcuucucggccuuuuggcuaagaucaaguguaguaucuguucuuauc
aguuuaauauauauuaaauggauuuuuggagcagggagauggaguccacu
ccacgcaucgaccugguauugcaguaccuccaggaacggugc
..................................................
...<<<<<<..>>>>>>.................<<<<.<<<<.>>>>>>
>>..<<<<<<.<<<<<.............>>>>>..>>>>>>
    		 ? GO:0000398 ... O95926 36867703
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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