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BioLiP
Download all results in tab-seperated text for 9 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		RNA
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    1 7oqb:W
    (9.0)    		 BS01 >7oqb:2 (identical to 7oqe:2)
    guguaguaucuguucuuuucaguguaacaacugaaaugaccucgaggcuc
auacacauuuuuuggcaggacgggaagaggagacgucgcgacccucgcag
agucguucuugacuuggucgcuugauguuucuucuucccguuc
.................<<<<<<......>>>>>><<<<<<<..>>>.>>
>>................<<<<<<<<<<.<<<<<<<<<<<<.<<.....<
<<<<<....>>>>>>>>>>>>..>>>>>>>>.>>>>>>>>>>.
    		 ? GO:0000398 ... Q08963 34349264
    2 7oqb:Y
    (9.0)    		 BS01 >7oqb:2 (identical to 7oqe:2)
    guguaguaucuguucuuuucaguguaacaacugaaaugaccucgaggcuc
auacacauuuuuuggcaggacgggaagaggagacgucgcgacccucgcag
agucguucuugacuuggucgcuugauguuucuucuucccguuc
.................<<<<<<......>>>>>><<<<<<<..>>>.>>
>>................<<<<<<<<<<.<<<<<<<<<<<<.<<.....<
<<<<<....>>>>>>>>>>>>..>>>>>>>>.>>>>>>>>>>.
    		 ? GO:0000398 ... P40567 34349264
    3 7oqb:p
    (9.0)    		 BS01 >7oqb:2 (identical to 7oqe:2)
    guguaguaucuguucuuuucaguguaacaacugaaaugaccucgaggcuc
auacacauuuuuuggcaggacgggaagaggagacgucgcgacccucgcag
agucguucuugacuuggucgcuugauguuucuucuucccguuc
.................<<<<<<......>>>>>><<<<<<<..>>>.>>
>>................<<<<<<<<<<.<<<<<<<<<<<<.<<.....<
<<<<<....>>>>>>>>>>>>..>>>>>>>>.>>>>>>>>>>.
    		 3.6.4.13 GO:0000243 ... P21372 34349264
    4 7oqb:s
    (9.0)    		 BS01 >7oqb:2 (identical to 7oqe:2)
    guguaguaucuguucuuuucaguguaacaacugaaaugaccucgaggcuc
auacacauuuuuuggcaggacgggaagaggagacgucgcgacccucgcag
agucguucuugacuuggucgcuugauguuucuucuucccguuc
.................<<<<<<......>>>>>><<<<<<<..>>>.>>
>>................<<<<<<<<<<.<<<<<<<<<<<<.<<.....<
<<<<<....>>>>>>>>>>>>..>>>>>>>>.>>>>>>>>>>.
    		 ? GO:0000243 ... P40018 34349264
    5 7oqb:t
    (9.0)    		 BS01 >7oqb:2 (identical to 7oqe:2)
    guguaguaucuguucuuuucaguguaacaacugaaaugaccucgaggcuc
auacacauuuuuuggcaggacgggaagaggagacgucgcgacccucgcag
agucguucuugacuuggucgcuugauguuucuucuucccguuc
.................<<<<<<......>>>>>><<<<<<<..>>>.>>
>>................<<<<<<<<<<.<<<<<<<<<<<<.<<.....<
<<<<<....>>>>>>>>>>>>..>>>>>>>>.>>>>>>>>>>.
    		 ? GO:0000243 ... Q02260 34349264
    6 7oqb:u
    (9.0)    		 BS01 >7oqb:2 (identical to 7oqe:2)
    guguaguaucuguucuuuucaguguaacaacugaaaugaccucgaggcuc
auacacauuuuuuggcaggacgggaagaggagacgucgcgacccucgcag
agucguucuugacuuggucgcuugauguuucuucuucccguuc
.................<<<<<<......>>>>>><<<<<<<..>>>.>>
>>................<<<<<<<<<<.<<<<<<<<<<<<.<<.....<
<<<<<....>>>>>>>>>>>>..>>>>>>>>.>>>>>>>>>>.
    		 ? GO:0000243 ... Q06217 34349264
    7 7oqb:v
    (9.0)    		 BS01 >7oqb:2 (identical to 7oqe:2)
    guguaguaucuguucuuuucaguguaacaacugaaaugaccucgaggcuc
auacacauuuuuuggcaggacgggaagaggagacgucgcgacccucgcag
agucguucuugacuuggucgcuugauguuucuucuucccguuc
.................<<<<<<......>>>>>><<<<<<<..>>>.>>
>>................<<<<<<<<<<.<<<<<<<<<<<<.<<.....<
<<<<<....>>>>>>>>>>>>..>>>>>>>>.>>>>>>>>>>.
    		 ? GO:0000243 ... P43321 34349264
    8 7oqb:w
    (9.0)    		 BS01 >7oqb:2 (identical to 7oqe:2)
    guguaguaucuguucuuuucaguguaacaacugaaaugaccucgaggcuc
auacacauuuuuuggcaggacgggaagaggagacgucgcgacccucgcag
agucguucuugacuuggucgcuugauguuucuucuucccguuc
.................<<<<<<......>>>>>><<<<<<<..>>>.>>
>>................<<<<<<<<<<.<<<<<<<<<<<<.<<.....<
<<<<<....>>>>>>>>>>>>..>>>>>>>>.>>>>>>>>>>.
    		 ? GO:0000243 ... Q12330 34349264
    9 7oqb:y
    (9.0)    		 BS01 >7oqb:2 (identical to 7oqe:2)
    guguaguaucuguucuuuucaguguaacaacugaaaugaccucgaggcuc
auacacauuuuuuggcaggacgggaagaggagacgucgcgacccucgcag
agucguucuugacuuggucgcuugauguuucuucuucccguuc
.................<<<<<<......>>>>>><<<<<<<..>>>.>>
>>................<<<<<<<<<<.<<<<<<<<<<<<.<<.....<
<<<<<....>>>>>>>>>>>>..>>>>>>>>.>>>>>>>>>>.
    		 ? GO:0000243 ... P40204 34349264
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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