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BioLiP
Download all results in tab-seperated text for 11 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		RNA
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    1 7ohs:C
    (4.38)    		 BS02 >7ohs:2
    aaacuuucaacaacggaucucuugguucucgcaucgaugaagaacgcagc
gaaaugcgauacguaaugugaauugcagaauuccgugaaucaucgaaucu
uugaacgcacgccccuugcagggggcaugccuguuugagcgucauuu
.........................................<<<<<<.<<
.....>>>.....(.<<<(.....>>............).>>>..)...>
>>........<<<<<<....>>>>>>.....................
    		 ? GO:0002181 ... P10664 34813592
    2 7ohs:G
    (4.38)    		 BS02 >7ohs:2
    aaacuuucaacaacggaucucuugguucucgcaucgaugaagaacgcagc
gaaaugcgauacguaaugugaauugcagaauuccgugaaucaucgaaucu
uugaacgcacgccccuugcagggggcaugccuguuugagcgucauuu
.........................................<<<<<<.<<
.....>>>.....(.<<<(.....>>............).>>>..)...>
>>........<<<<<<....>>>>>>.....................
    		 ? GO:0000470 ... P17076 34813592
    3 7ohs:L
    (4.38)    		 BS02 >7ohs:2
    aaacuuucaacaacggaucucuugguucucgcaucgaugaagaacgcagc
gaaaugcgauacguaaugugaauugcagaauuccgugaaucaucgaaucu
uugaacgcacgccccuugcagggggcaugccuguuugagcgucauuu
.........................................<<<<<<.<<
.....>>>.....(.<<<(.....>>............).>>>..)...>
>>........<<<<<<....>>>>>>.....................
    		 ? GO:0002181 ... Q12690 34813592
    4 7ohs:N
    (4.38)    		 BS02 >7ohs:2
    aaacuuucaacaacggaucucuugguucucgcaucgaugaagaacgcagc
gaaaugcgauacguaaugugaauugcagaauuccgugaaucaucgaaucu
uugaacgcacgccccuugcagggggcaugccuguuugagcgucauuu
.........................................<<<<<<.<<
.....>>>.....(.<<<(.....>>............).>>>..)...>
>>........<<<<<<....>>>>>>.....................
    		 ? GO:0002181 ... P05748 34813592
    5 7ohs:P
    (4.38)    		 BS02 >7ohs:2
    aaacuuucaacaacggaucucuugguucucgcaucgaugaagaacgcagc
gaaaugcgauacguaaugugaauugcagaauuccgugaaucaucgaaucu
uugaacgcacgccccuugcagggggcaugccuguuugagcgucauuu
.........................................<<<<<<.<<
.....>>>.....(.<<<(.....>>............).>>>..)...>
>>........<<<<<<....>>>>>>.....................
    		 ? GO:0000448 ... P05740 34813592
    6 7ohs:Y
    (4.38)    		 BS02 >7ohs:2
    aaacuuucaacaacggaucucuugguucucgcaucgaugaagaacgcagc
gaaaugcgauacguaaugugaauugcagaauuccgugaaucaucgaaucu
uugaacgcacgccccuugcagggggcaugccuguuugagcgucauuu
.........................................<<<<<<.<<
.....>>>.....(.<<<(.....>>............).>>>..)...>
>>........<<<<<<....>>>>>>.....................
    		 ? GO:0002181 ... P05743 34813592
    7 7ohs:h
    (4.38)    		 BS02 >7ohs:2
    aaacuuucaacaacggaucucuugguucucgcaucgaugaagaacgcagc
gaaaugcgauacguaaugugaauugcagaauuccgugaaucaucgaaucu
uugaacgcacgccccuugcagggggcaugccuguuugagcgucauuu
.........................................<<<<<<.<<
.....>>>.....(.<<<(.....>>............).>>>..)...>
>>........<<<<<<....>>>>>>.....................
    		 ? GO:0000463 ... P0CX84 34813592
    8 7ohs:j
    (4.38)    		 BS02 >7ohs:2
    aaacuuucaacaacggaucucuugguucucgcaucgaugaagaacgcagc
gaaaugcgauacguaaugugaauugcagaauuccgugaaucaucgaaucu
uugaacgcacgccccuugcagggggcaugccuguuugagcgucauuu
.........................................<<<<<<.<<
.....>>>.....(.<<<(.....>>............).>>>..)...>
>>........<<<<<<....>>>>>>.....................
    		 ? GO:0000448 ... P49166 34813592
    9 7ohs:n
    (4.38)    		 BS02 >7ohs:2
    aaacuuucaacaacggaucucuugguucucgcaucgaugaagaacgcagc
gaaaugcgauacguaaugugaauugcagaauuccgugaaucaucgaaucu
uugaacgcacgccccuugcagggggcaugccuguuugagcgucauuu
.........................................<<<<<<.<<
.....>>>.....(.<<<(.....>>............).>>>..)...>
>>........<<<<<<....>>>>>>.....................
    		 ? GO:0000462 ... P53261 34813592
    10 7ohs:t
    (4.38)    		 BS01 >7ohs:2
    aaacuuucaacaacggaucucuugguucucgcaucgaugaagaacgcagc
gaaaugcgauacguaaugugaauugcagaauuccgugaaucaucgaaucu
uugaacgcacgccccuugcagggggcaugccuguuugagcgucauuu
.........................................<<<<<<.<<
.....>>>.....(.<<<(.....>>............).>>>..)...>
>>........<<<<<<....>>>>>>.....................
    		 ? GO:0000463 ... P40693 34813592
    11 7ohs:v
    (4.38)    		 BS02 >7ohs:2
    aaacuuucaacaacggaucucuugguucucgcaucgaugaagaacgcagc
gaaaugcgauacguaaugugaauugcagaauuccgugaaucaucgaaucu
uugaacgcacgccccuugcagggggcaugccuguuugagcgucauuu
.........................................<<<<<<.<<
.....>>>.....(.<<<(.....>>............).>>>..)...>
>>........<<<<<<....>>>>>>.....................
    		 ? GO:0003674 ... P40007 34813592
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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