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BioLiP
Download all results in tab-seperated text for 13 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		RNA
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    1 7abi:A
    (8.0)    		 BS02 >7abi:2
    cgcuucucggccuuuuggcuaagaucaaguguaguaucuguucuuaucag
uuuaauaucugauguccucgaggacaggauuuuuggagcagggagaugga
auaggagcuugcuccguccacuccacgcaucgaccugguauugcaguacc
uccaggaacggugc
..............................................<<<<
........>>>>.<<<<<..>>>>>................<<<<.<<<<
...<<<<....>>>>.>>>>>>>>..<<<<<<.<<<<<............
.>>>>>..>>>>>>
    		 ? GO:0000244 ... Q6P2Q9 33243851
    2 7abi:B
    (8.0)    		 BS01 >7abi:2
    cgcuucucggccuuuuggcuaagaucaaguguaguaucuguucuuaucag
uuuaauaucugauguccucgaggacaggauuuuuggagcagggagaugga
auaggagcuugcuccguccacuccacgcaucgaccugguauugcaguacc
uccaggaacggugc
..............................................<<<<
........>>>>.<<<<<..>>>>>................<<<<.<<<<
...<<<<....>>>>.>>>>>>>>..<<<<<<.<<<<<............
.>>>>>..>>>>>>
    		 ? GO:0000398 ... P08579 33243851
    3 7abi:F
    (8.0)    		 BS01 >7abi:2
    cgcuucucggccuuuuggcuaagaucaaguguaguaucuguucuuaucag
uuuaauaucugauguccucgaggacaggauuuuuggagcagggagaugga
auaggagcuugcuccguccacuccacgcaucgaccugguauugcaguacc
uccaggaacggugc
..............................................<<<<
........>>>>.<<<<<..>>>>>................<<<<.<<<<
...<<<<....>>>>.>>>>>>>>..<<<<<<.<<<<<............
.>>>>>..>>>>>>
    		 ? GO:0000245 ... Q15428 33243851
    4 7abi:L
    (8.0)    		 BS01 >7abi:2
    cgcuucucggccuuuuggcuaagaucaaguguaguaucuguucuuaucag
uuuaauaucugauguccucgaggacaggauuuuuggagcagggagaugga
auaggagcuugcuccguccacuccacgcaucgaccugguauugcaguacc
uccaggaacggugc
..............................................<<<<
........>>>>.<<<<<..>>>>>................<<<<.<<<<
...<<<<....>>>>.>>>>>>>>..<<<<<<.<<<<<............
.>>>>>..>>>>>>
    		 ? GO:0000077 ... Q99459 33243851
    5 7abi:T
    (8.0)    		 BS01 >7abi:2
    cgcuucucggccuuuuggcuaagaucaaguguaguaucuguucuuaucag
uuuaauaucugauguccucgaggacaggauuuuuggagcagggagaugga
auaggagcuugcuccguccacuccacgcaucgaccugguauugcaguacc
uccaggaacggugc
..............................................<<<<
........>>>>.<<<<<..>>>>>................<<<<.<<<<
...<<<<....>>>>.>>>>>>>>..<<<<<<.<<<<<............
.>>>>>..>>>>>>
    		 ? GO:0000398 ... Q13435 33243851
    6 7abi:W
    (8.0)    		 BS01 >7abi:2
    cgcuucucggccuuuuggcuaagaucaaguguaguaucuguucuuaucag
uuuaauaucugauguccucgaggacaggauuuuuggagcagggagaugga
auaggagcuugcuccguccacuccacgcaucgaccugguauugcaguacc
uccaggaacggugc
..............................................<<<<
........>>>>.<<<<<..>>>>>................<<<<.<<<<
...<<<<....>>>>.>>>>>>>>..<<<<<<.<<<<<............
.>>>>>..>>>>>>
    		 ? GO:0000398 ... P09661 33243851
    7 7abi:h
    (8.0)    		 BS01 >7abi:2
    cgcuucucggccuuuuggcuaagaucaaguguaguaucuguucuuaucag
uuuaauaucugauguccucgaggacaggauuuuuggagcagggagaugga
auaggagcuugcuccguccacuccacgcaucgaccugguauugcaguacc
uccaggaacggugc
..............................................<<<<
........>>>>.<<<<<..>>>>>................<<<<.<<<<
...<<<<....>>>>.>>>>>>>>..<<<<<<.<<<<<............
.>>>>>..>>>>>>
    		 ? GO:0000245 ... P62316 33243851
    8 7abi:j
    (8.0)    		 BS01 >7abi:2
    cgcuucucggccuuuuggcuaagaucaaguguaguaucuguucuuaucag
uuuaauaucugauguccucgaggacaggauuuuuggagcagggagaugga
auaggagcuugcuccguccacuccacgcaucgaccugguauugcaguacc
uccaggaacggugc
..............................................<<<<
........>>>>.<<<<<..>>>>>................<<<<.<<<<
...<<<<....>>>>.>>>>>>>>..<<<<<<.<<<<<............
.>>>>>..>>>>>>
    		 ? GO:0000245 ... P62304 33243851
    9 7abi:k
    (8.0)    		 BS01 >7abi:2
    cgcuucucggccuuuuggcuaagaucaaguguaguaucuguucuuaucag
uuuaauaucugauguccucgaggacaggauuuuuggagcagggagaugga
auaggagcuugcuccguccacuccacgcaucgaccugguauugcaguacc
uccaggaacggugc
..............................................<<<<
........>>>>.<<<<<..>>>>>................<<<<.<<<<
...<<<<....>>>>.>>>>>>>>..<<<<<<.<<<<<............
.>>>>>..>>>>>>
    		 ? GO:0000245 ... P62308 33243851
    10 7abi:l
    (8.0)    		 BS01 >7abi:2
    cgcuucucggccuuuuggcuaagaucaaguguaguaucuguucuuaucag
uuuaauaucugauguccucgaggacaggauuuuuggagcagggagaugga
auaggagcuugcuccguccacuccacgcaucgaccugguauugcaguacc
uccaggaacggugc
..............................................<<<<
........>>>>.<<<<<..>>>>>................<<<<.<<<<
...<<<<....>>>>.>>>>>>>>..<<<<<<.<<<<<............
.>>>>>..>>>>>>
    		 ? GO:0000243 ... P62318 33243851
    11 7abi:m
    (8.0)    		 BS01 >7abi:2
    cgcuucucggccuuuuggcuaagaucaaguguaguaucuguucuuaucag
uuuaauaucugauguccucgaggacaggauuuuuggagcagggagaugga
auaggagcuugcuccguccacuccacgcaucgaccugguauugcaguacc
uccaggaacggugc
..............................................<<<<
........>>>>.<<<<<..>>>>>................<<<<.<<<<
...<<<<....>>>>.>>>>>>>>..<<<<<<.<<<<<............
.>>>>>..>>>>>>
    		 ? GO:0000387 ... P14678 33243851
    12 7abi:n
    (8.0)    		 BS01 >7abi:2
    cgcuucucggccuuuuggcuaagaucaaguguaguaucuguucuuaucag
uuuaauaucugauguccucgaggacaggauuuuuggagcagggagaugga
auaggagcuugcuccguccacuccacgcaucgaccugguauugcaguacc
uccaggaacggugc
..............................................<<<<
........>>>>.<<<<<..>>>>>................<<<<.<<<<
...<<<<....>>>>.>>>>>>>>..<<<<<<.<<<<<............
.>>>>>..>>>>>>
    		 ? GO:0000243 ... P62314 33243851
    13 7abi:u
    (8.0)    		 BS01 >7abi:2
    cgcuucucggccuuuuggcuaagaucaaguguaguaucuguucuuaucag
uuuaauaucugauguccucgaggacaggauuuuuggagcagggagaugga
auaggagcuugcuccguccacuccacgcaucgaccugguauugcaguacc
uccaggaacggugc
..............................................<<<<
........>>>>.<<<<<..>>>>>................<<<<.<<<<
...<<<<....>>>>.>>>>>>>>..<<<<<<.<<<<<............
.>>>>>..>>>>>>
    		 ? GO:0000245 ... O75533 33243851
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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