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BioLiP
Download all results in tab-seperated text for 14 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		RNA
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    1 6g90:O
    (4.0)    		 BS01 >6g90:2
    aaguguaguaucuguucuuuucaguguaacaacugaaaugaccuaggcuc
auacacauuuuuuggcaggacgggaagaggagacgucgcgacccucgcag
agucguucuugacuuggucgcuugauguuucuucuucccguuc
...................<<<<<<......>>>>>><<<<<<..>>.>>
>>................<<<<<<<<<<.<<<<<<<<<<<<.<<.....<
<<<<<....>>>>>>>>>>>>..>>>>>>>>.>>>>>>>>>>.
    		 ? GO:0000245 ... P49955 29995849
    2 6g90:Q
    (4.0)    		 BS01 >6g90:2
    aaguguaguaucuguucuuuucaguguaacaacugaaaugaccuaggcuc
auacacauuuuuuggcaggacgggaagaggagacgucgcgacccucgcag
agucguucuugacuuggucgcuugauguuucuucuucccguuc
...................<<<<<<......>>>>>><<<<<<..>>.>>
>>................<<<<<<<<<<.<<<<<<<<<<<<.<<.....<
<<<<<....>>>>>>>>>>>>..>>>>>>>>.>>>>>>>>>>.
    		 ? GO:0000245 ... Q02554 29995849
    3 6g90:S
    (4.0)    		 BS01 >6g90:2
    aaguguaguaucuguucuuuucaguguaacaacugaaaugaccuaggcuc
auacacauuuuuuggcaggacgggaagaggagacgucgcgacccucgcag
agucguucuugacuuggucgcuugauguuucuucuucccguuc
...................<<<<<<......>>>>>><<<<<<..>>.>>
>>................<<<<<<<<<<.<<<<<<<<<<<<.<<.....<
<<<<<....>>>>>>>>>>>>..>>>>>>>>.>>>>>>>>>>.
    		 ? GO:0000245 ... Q06835 29995849
    4 6g90:T
    (4.0)    		 BS01 >6g90:2
    aaguguaguaucuguucuuuucaguguaacaacugaaaugaccuaggcuc
auacacauuuuuuggcaggacgggaagaggagacgucgcgacccucgcag
agucguucuugacuuggucgcuugauguuucuucuucccguuc
...................<<<<<<......>>>>>><<<<<<..>>.>>
>>................<<<<<<<<<<.<<<<<<<<<<<<.<<.....<
<<<<<....>>>>>>>>>>>>..>>>>>>>>.>>>>>>>>>>.
    		 ? GO:0000395 ... P19736 29995849
    5 6g90:U
    (4.0)    		 BS01 >6g90:2
    aaguguaguaucuguucuuuucaguguaacaacugaaaugaccuaggcuc
auacacauuuuuuggcaggacgggaagaggagacgucgcgacccucgcag
agucguucuugacuuggucgcuugauguuucuucuucccguuc
...................<<<<<<......>>>>>><<<<<<..>>.>>
>>................<<<<<<<<<<.<<<<<<<<<<<<.<<.....<
<<<<<....>>>>>>>>>>>>..>>>>>>>>.>>>>>>>>>>.
    		 ? GO:0000245 ... Q07350 29995849
    6 6g90:W
    (4.0)    		 BS01 >6g90:2
    aaguguaguaucuguucuuuucaguguaacaacugaaaugaccuaggcuc
auacacauuuuuuggcaggacgggaagaggagacgucgcgacccucgcag
agucguucuugacuuggucgcuugauguuucuucuucccguuc
...................<<<<<<......>>>>>><<<<<<..>>.>>
>>................<<<<<<<<<<.<<<<<<<<<<<<.<<.....<
<<<<<....>>>>>>>>>>>>..>>>>>>>>.>>>>>>>>>>.
    		 ? GO:0000398 ... Q08963 29995849
    7 6g90:Y
    (4.0)    		 BS01 >6g90:2
    aaguguaguaucuguucuuuucaguguaacaacugaaaugaccuaggcuc
auacacauuuuuuggcaggacgggaagaggagacgucgcgacccucgcag
agucguucuugacuuggucgcuugauguuucuucuucccguuc
...................<<<<<<......>>>>>><<<<<<..>>.>>
>>................<<<<<<<<<<.<<<<<<<<<<<<.<<.....<
<<<<<....>>>>>>>>>>>>..>>>>>>>>.>>>>>>>>>>.
    		 ? GO:0000398 ... P40567 29995849
    8 6g90:s
    (4.0)    		 BS01 >6g90:2
    aaguguaguaucuguucuuuucaguguaacaacugaaaugaccuaggcuc
auacacauuuuuuggcaggacgggaagaggagacgucgcgacccucgcag
agucguucuugacuuggucgcuugauguuucuucuucccguuc
...................<<<<<<......>>>>>><<<<<<..>>.>>
>>................<<<<<<<<<<.<<<<<<<<<<<<.<<.....<
<<<<<....>>>>>>>>>>>>..>>>>>>>>.>>>>>>>>>>.
    		 ? GO:0000243 ... P40018 29995849
    9 6g90:t
    (4.0)    		 BS01 >6g90:2
    aaguguaguaucuguucuuuucaguguaacaacugaaaugaccuaggcuc
auacacauuuuuuggcaggacgggaagaggagacgucgcgacccucgcag
agucguucuugacuuggucgcuugauguuucuucuucccguuc
...................<<<<<<......>>>>>><<<<<<..>>.>>
>>................<<<<<<<<<<.<<<<<<<<<<<<.<<.....<
<<<<<....>>>>>>>>>>>>..>>>>>>>>.>>>>>>>>>>.
    		 ? GO:0000243 ... Q02260 29995849
    10 6g90:u
    (4.0)    		 BS01 >6g90:2
    aaguguaguaucuguucuuuucaguguaacaacugaaaugaccuaggcuc
auacacauuuuuuggcaggacgggaagaggagacgucgcgacccucgcag
agucguucuugacuuggucgcuugauguuucuucuucccguuc
...................<<<<<<......>>>>>><<<<<<..>>.>>
>>................<<<<<<<<<<.<<<<<<<<<<<<.<<.....<
<<<<<....>>>>>>>>>>>>..>>>>>>>>.>>>>>>>>>>.
    		 ? GO:0000243 ... Q06217 29995849
    11 6g90:v
    (4.0)    		 BS01 >6g90:2
    aaguguaguaucuguucuuuucaguguaacaacugaaaugaccuaggcuc
auacacauuuuuuggcaggacgggaagaggagacgucgcgacccucgcag
agucguucuugacuuggucgcuugauguuucuucuucccguuc
...................<<<<<<......>>>>>><<<<<<..>>.>>
>>................<<<<<<<<<<.<<<<<<<<<<<<.<<.....<
<<<<<....>>>>>>>>>>>>..>>>>>>>>.>>>>>>>>>>.
    		 ? GO:0000243 ... P43321 29995849
    12 6g90:w
    (4.0)    		 BS01 >6g90:2
    aaguguaguaucuguucuuuucaguguaacaacugaaaugaccuaggcuc
auacacauuuuuuggcaggacgggaagaggagacgucgcgacccucgcag
agucguucuugacuuggucgcuugauguuucuucuucccguuc
...................<<<<<<......>>>>>><<<<<<..>>.>>
>>................<<<<<<<<<<.<<<<<<<<<<<<.<<.....<
<<<<<....>>>>>>>>>>>>..>>>>>>>>.>>>>>>>>>>.
    		 ? GO:0000243 ... Q12330 29995849
    13 6g90:x
    (4.0)    		 BS01 >6g90:2
    aaguguaguaucuguucuuuucaguguaacaacugaaaugaccuaggcuc
auacacauuuuuuggcaggacgggaagaggagacgucgcgacccucgcag
agucguucuugacuuggucgcuugauguuucuucuucccguuc
...................<<<<<<......>>>>>><<<<<<..>>.>>
>>................<<<<<<<<<<.<<<<<<<<<<<<.<<.....<
<<<<<....>>>>>>>>>>>>..>>>>>>>>.>>>>>>>>>>.
    		 ? GO:0000243 ... P54999 29995849
    14 6g90:y
    (4.0)    		 BS01 >6g90:2
    aaguguaguaucuguucuuuucaguguaacaacugaaaugaccuaggcuc
auacacauuuuuuggcaggacgggaagaggagacgucgcgacccucgcag
agucguucuugacuuggucgcuugauguuucuucuucccguuc
...................<<<<<<......>>>>>><<<<<<..>>.>>
>>................<<<<<<<<<<.<<<<<<<<<<<<.<<.....<
<<<<<....>>>>>>>>>>>>..>>>>>>>>.>>>>>>>>>>.
    		 ? GO:0000243 ... P40204 29995849
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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