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BioLiP
Download all results in tab-seperated text for 23 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7vd5:11 (2.5) BS17 A86 ? GO:0009416 ... A0A679BXP6 N/A
    2 7vd5:12 (2.5) BS01 CLA N/A GO:0009765 ... N/A N/A
    3 7vd5:12 (2.5) BS02 A86 N/A GO:0009765 ... N/A N/A
    4 7vd5:12 (2.5) BS03 A86 N/A GO:0009765 ... N/A N/A
    5 7vd5:12 (2.5) BS04 CLA N/A GO:0009765 ... N/A N/A
    6 7vd5:12 (2.5) BS05 CLA N/A GO:0009765 ... N/A N/A
    7 7vd5:12 (2.5) BS06 CLA N/A GO:0009765 ... N/A N/A
    8 7vd5:12 (2.5) BS07 KC1 N/A GO:0009765 ... N/A N/A
    9 7vd5:12 (2.5) BS08 CLA N/A GO:0009765 ... N/A N/A
    10 7vd5:12 (2.5) BS09 KC1 N/A GO:0009765 ... N/A N/A
    11 7vd5:12 (2.5) BS10 CLA N/A GO:0009765 ... N/A N/A
    12 7vd5:12 (2.5) BS11 CLA N/A GO:0009765 ... N/A N/A
    13 7vd5:12 (2.5) BS12 KC1 N/A GO:0009765 ... N/A N/A
    14 7vd5:12 (2.5) BS13 CLA N/A GO:0009765 ... N/A N/A
    15 7vd5:12 (2.5) BS14 A86 N/A GO:0009765 ... N/A N/A
    16 7vd5:12 (2.5) BS15 A86 N/A GO:0009765 ... N/A N/A
    17 7vd5:12 (2.5) BS16 A86 N/A GO:0009765 ... N/A N/A
    18 7vd5:12 (2.5) BS17 A86 N/A GO:0009765 ... N/A N/A
    19 7vd5:12 (2.5) BS18 A86 N/A GO:0009765 ... N/A N/A
    20 7vd5:12 (2.5) BS19 A86 N/A GO:0009765 ... N/A N/A
    21 7vd5:13 (2.5) BS01 CLA ? GO:0009765 ... A0A679BXP6 N/A
    22 7vd5:13 (2.5) BS02 A86 ? GO:0009765 ... A0A679BXP6 N/A
    23 7vd5:13 (2.5) BS03 A86 ? GO:0009765 ... A0A679BXP6 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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