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BioLiP
Download all results in tab-seperated text for 22 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6j3y:11 (3.3) BS17 CLA N/A GO:0009765 ... N/A 31358960
    2 6j3y:11 (3.3) BS18 A86 N/A GO:0009765 ... N/A 31358960
    3 6j3y:11 (3.3) BS19 CLA N/A GO:0009765 ... N/A 31358960
    4 6j3y:12 (3.3) BS01 A86 N/A GO:0009765 ... N/A 31358960
    5 6j3y:12 (3.3) BS02 CLA N/A GO:0009765 ... N/A 31358960
    6 6j3y:12 (3.3) BS03 CLA N/A GO:0009765 ... N/A 31358960
    7 6j3y:12 (3.3) BS04 CLA N/A GO:0009765 ... N/A 31358960
    8 6j3y:12 (3.3) BS05 CLA N/A GO:0009765 ... N/A 31358960
    9 6j3y:12 (3.3) BS06 CLA N/A GO:0009765 ... N/A 31358960
    10 6j3y:12 (3.3) BS07 CLA N/A GO:0009765 ... N/A 31358960
    11 6j3y:12 (3.3) BS08 CLA N/A GO:0009765 ... N/A 31358960
    12 6j3y:12 (3.3) BS09 CLA N/A GO:0009765 ... N/A 31358960
    13 6j3y:12 (3.3) BS10 CLA N/A GO:0009765 ... N/A 31358960
    14 6j3y:12 (3.3) BS11 CLA N/A GO:0009765 ... N/A 31358960
    15 6j3y:12 (3.3) BS12 A86 N/A GO:0009765 ... N/A 31358960
    16 6j3y:12 (3.3) BS13 A86 N/A GO:0009765 ... N/A 31358960
    17 6j3y:12 (3.3) BS14 A86 N/A GO:0009765 ... N/A 31358960
    18 6j3y:12 (3.3) BS15 A86 N/A GO:0009765 ... N/A 31358960
    19 6j3y:12 (3.3) BS16 CLA N/A GO:0009765 ... N/A 31358960
    20 6j3y:12 (3.3) BS17 A86 N/A GO:0009765 ... N/A 31358960
    21 6j3y:12 (3.3) BS18 CLA N/A GO:0009765 ... N/A 31358960
    22 6j3y:12 (3.3) BS19 A86 N/A GO:0009765 ... N/A 31358960
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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