Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 60 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6trc:0 (2.98) BS03 CLA ? GO:0009522 ... Q8DGB4 N/A
    2 6trc:0 (2.98) BS04 CLA ? GO:0009522 ... Q8DGB4 N/A
    3 6trc:1 (2.98) BS01 CL0 1.97.1.12 GO:0000287 ... P0A405 N/A
    4 6trc:1 (2.98) BS02 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    5 6trc:1 (2.98) BS03 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    6 6trc:1 (2.98) BS04 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    7 6trc:1 (2.98) BS05 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    8 6trc:1 (2.98) BS06 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    9 6trc:1 (2.98) BS07 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    10 6trc:1 (2.98) BS08 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    11 6trc:1 (2.98) BS09 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    12 6trc:1 (2.98) BS10 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    13 6trc:1 (2.98) BS11 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    14 6trc:1 (2.98) BS12 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    15 6trc:1 (2.98) BS13 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    16 6trc:1 (2.98) BS14 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    17 6trc:1 (2.98) BS15 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    18 6trc:1 (2.98) BS16 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    19 6trc:1 (2.98) BS17 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    20 6trc:1 (2.98) BS18 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    21 6trc:1 (2.98) BS19 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    22 6trc:1 (2.98) BS20 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    23 6trc:1 (2.98) BS21 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    24 6trc:1 (2.98) BS22 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    25 6trc:1 (2.98) BS23 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    26 6trc:1 (2.98) BS24 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    27 6trc:1 (2.98) BS25 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    28 6trc:1 (2.98) BS26 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    29 6trc:1 (2.98) BS27 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    30 6trc:1 (2.98) BS28 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    31 6trc:1 (2.98) BS29 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    32 6trc:1 (2.98) BS30 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    33 6trc:1 (2.98) BS31 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    34 6trc:1 (2.98) BS32 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    35 6trc:1 (2.98) BS33 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    36 6trc:1 (2.98) BS34 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    37 6trc:1 (2.98) BS35 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    38 6trc:1 (2.98) BS36 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    39 6trc:1 (2.98) BS37 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    40 6trc:1 (2.98) BS38 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    41 6trc:1 (2.98) BS39 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    42 6trc:1 (2.98) BS40 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    43 6trc:1 (2.98) BS41 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    44 6trc:1 (2.98) BS42 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    45 6trc:1 (2.98) BS43 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    46 6trc:1 (2.98) BS44 PQN 1.97.1.12 GO:0000287 ... P0A405 N/A
    47 6trc:1 (2.98) BS45 SF4 1.97.1.12 GO:0000287 ... P0A405 N/A
    48 6trc:1 (2.98) BS46 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    49 6trc:1 (2.98) BS47 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    50 6trc:1 (2.98) BS48 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    51 6trc:1 (2.98) BS49 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    52 6trc:1 (2.98) BS50 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    53 6trc:2 (2.98) BS02 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    54 6trc:2 (2.98) BS03 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    55 6trc:2 (2.98) BS04 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    56 6trc:2 (2.98) BS05 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    57 6trc:2 (2.98) BS06 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    58 6trc:6 (2.98) BS02 CLA ? GO:0009522 ... P0A401 N/A
    59 6trc:8 (2.98) BS01 CLA ? GO:0009522 ... P0A429 N/A
    60 6trc:9 (2.98) BS01 CLA ? GO:0009522 ... P0A425 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218