BioLiP

Download all results in tab-seperated text for 9 receptor-ligand interactions, whose format is explained at readme.txt.

Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.

Click Site # to view the binding site structure. Hover over Site # to view the binding residues.

The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.

Hover over EC number to view the full name of enzymatic activity.

Hover over GO terms to view all GO terms.

Hover over UniProt to view the protein name.

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gcaggggagauaccaugaucacgaaggugguuuucccagggcgaggcuua
uccauugcacuccggaugugcugaccccugcgauuuccccaaauguggga
aacucgacugcauaauuugugguagugggggacugcguucgcgcuuuccc
cug
<<<<.<<<<<.<<<<<..........>>>>>>>>>>.<<<<...<<<.<<
<<<..........>>>>>.>>>...>>>>.<<<<<<<<<.......>>>>
>>.>>>.>>>>...............<<<<<<..<<<<..>>>>..>>>>
>>.
gcaggggagauaccaugaucacgaaggugguuuucccagggcgaggcuua
uccauugcacuccggaugugcugaccccugcgauuuccccaaauguggga
aacucgacugcauaauuugugguagugggggacugcguucgcgcuuuccc
cug
<<<<.<<<<<.<<<<<..........>>>>>>>>>>.<<<<...<<<.<<
<<<..........>>>>>.>>>...>>>>.<<<<<<<<<.......>>>>
>>.>>>.>>>>...............<<<<<<..<<<<..>>>>..>>>>
>>.
gcaggggagauaccaugaucacgaaggugguuuucccagggcgaggcuua
uccauugcacuccggaugugcugaccccugcgauuuccccaaauguggga
aacucgacugcauaauuugugguagugggggacugcguucgcgcuuuccc
cug
<<<<.<<<<<.<<<<<..........>>>>>>>>>>.<<<<...<<<.<<
<<<..........>>>>>.>>>...>>>>.<<<<<<<<<.......>>>>
>>.>>>.>>>>...............<<<<<<..<<<<..>>>>..>>>>
>>.
gcaggggagauaccaugaucacgaaggugguuuucccagggcgaggcuua
uccauugcacuccggaugugcugaccccugcgauuuccccaaauguggga
aacucgacugcauaauuugugguagugggggacugcguucgcgcuuuccc
cug
<<<<.<<<<<.<<<<<..........>>>>>>>>>>.<<<<...<<<.<<
<<<..........>>>>>.>>>...>>>>.<<<<<<<<<.......>>>>
>>.>>>.>>>>...............<<<<<<..<<<<..>>>>..>>>>
>>.
gcaggggagauaccaugaucacgaaggugguuuucccagggcgaggcuua
uccauugcacuccggaugugcugaccccugcgauuuccccaaauguggga
aacucgacugcauaauuugugguagugggggacugcguucgcgcuuuccc
cug
<<<<.<<<<<.<<<<<..........>>>>>>>>>>.<<<<...<<<.<<
<<<..........>>>>>.>>>...>>>>.<<<<<<<<<.......>>>>
>>.>>>.>>>>...............<<<<<<..<<<<..>>>>..>>>>
>>.
gcaggggagauaccaugaucacgaaggugguuuucccagggcgaggcuua
uccauugcacuccggaugugcugaccccugcgauuuccccaaauguggga
aacucgacugcauaauuugugguagugggggacugcguucgcgcuuuccc
cug
<<<<.<<<<<.<<<<<..........>>>>>>>>>>.<<<<...<<<.<<
<<<..........>>>>>.>>>...>>>>.<<<<<<<<<.......>>>>
>>.>>>.>>>>...............<<<<<<..<<<<..>>>>..>>>>
>>.
gcaggggagauaccaugaucacgaaggugguuuucccagggcgaggcuua
uccauugcacuccggaugugcugaccccugcgauuuccccaaauguggga
aacucgacugcauaauuugugguagugggggacugcguucgcgcuuuccc
cug
<<<<.<<<<<.<<<<<..........>>>>>>>>>>.<<<<...<<<.<<
<<<..........>>>>>.>>>...>>>>.<<<<<<<<<.......>>>>
>>.>>>.>>>>...............<<<<<<..<<<<..>>>>..>>>>
>>.
gcaggggagauaccaugaucacgaaggugguuuucccagggcgaggcuua
uccauugcacuccggaugugcugaccccugcgauuuccccaaauguggga
aacucgacugcauaauuugugguagugggggacugcguucgcgcuuuccc
cug
<<<<.<<<<<.<<<<<..........>>>>>>>>>>.<<<<...<<<.<<
<<<..........>>>>>.>>>...>>>>.<<<<<<<<<.......>>>>
>>.>>>.>>>>...............<<<<<<..<<<<..>>>>..>>>>
>>.
gcaggggagauaccaugaucacgaaggugguuuucccagggcgaggcuua
uccauugcacuccggaugugcugaccccugcgauuuccccaaauguggga
aacucgacugcauaauuugugguagugggggacugcguucgcgcuuuccc
cug
<<<<.<<<<<.<<<<<..........>>>>>>>>>>.<<<<...<<<.<<
<<<..........>>>>>.>>>...>>>>.<<<<<<<<<.......>>>>
>>.>>>.>>>>...............<<<<<<..<<<<..>>>>..>>>>
>>.

#	PDB (resolution)	Site #	RNA sequence	EC number	GO terms	UniProt	PubMed
1	8r08:11 (6.1)	BS01	>8r08:1 gcaggggagauaccaugaucacgaaggugguuuucccagggcgaggcuua uccauugcacuccggaugugcugaccccugcgauuuccccaaauguggga aacucgacugcauaauuugugguagugggggacugcguucgcgcuuuccc cug <<<<.<<<<<.<<<<<..........>>>>>>>>>>.<<<<...<<<.<< <<<..........>>>>>.>>>...>>>>.<<<<<<<<<.......>>>> >>.>>>.>>>>...............<<<<<<..<<<<..>>>>..>>>> >>.	?	GO:0000243 ...	P62314	38778104
2	8r08:12 (6.1)	BS01	>8r08:1 gcaggggagauaccaugaucacgaaggugguuuucccagggcgaggcuua uccauugcacuccggaugugcugaccccugcgauuuccccaaauguggga aacucgacugcauaauuugugguagugggggacugcguucgcgcuuuccc cug <<<<.<<<<<.<<<<<..........>>>>>>>>>>.<<<<...<<<.<< <<<..........>>>>>.>>>...>>>>.<<<<<<<<<.......>>>> >>.>>>.>>>>...............<<<<<<..<<<<..>>>>..>>>> >>.	?	GO:0000245 ...	P62316	38778104
3	8r08:13 (6.1)	BS01	>8r08:1 gcaggggagauaccaugaucacgaaggugguuuucccagggcgaggcuua uccauugcacuccggaugugcugaccccugcgauuuccccaaauguggga aacucgacugcauaauuugugguagugggggacugcguucgcgcuuuccc cug <<<<.<<<<<.<<<<<..........>>>>>>>>>>.<<<<...<<<.<< <<<..........>>>>>.>>>...>>>>.<<<<<<<<<.......>>>> >>.>>>.>>>>...............<<<<<<..<<<<..>>>>..>>>> >>.	?	GO:0000243 ...	P62318	38778104
4	8r08:1K (6.1)	BS01	>8r08:1 gcaggggagauaccaugaucacgaaggugguuuucccagggcgaggcuua uccauugcacuccggaugugcugaccccugcgauuuccccaaauguggga aacucgacugcauaauuugugguagugggggacugcguucgcgcuuuccc cug <<<<.<<<<<.<<<<<..........>>>>>>>>>>.<<<<...<<<.<< <<<..........>>>>>.>>>...>>>>.<<<<<<<<<.......>>>> >>.>>>.>>>>...............<<<<<<..<<<<..>>>>..>>>> >>.	?	GO:0000398 ...	P08621	38778104
5	8r08:1b (6.1)	BS01	>8r08:1 gcaggggagauaccaugaucacgaaggugguuuucccagggcgaggcuua uccauugcacuccggaugugcugaccccugcgauuuccccaaauguggga aacucgacugcauaauuugugguagugggggacugcguucgcgcuuuccc cug <<<<.<<<<<.<<<<<..........>>>>>>>>>>.<<<<...<<<.<< <<<..........>>>>>.>>>...>>>>.<<<<<<<<<.......>>>> >>.>>>.>>>>...............<<<<<<..<<<<..>>>>..>>>> >>.	?	GO:0000387 ...	P14678	38778104
6	8r08:1e (6.1)	BS01	>8r08:1 gcaggggagauaccaugaucacgaaggugguuuucccagggcgaggcuua uccauugcacuccggaugugcugaccccugcgauuuccccaaauguggga aacucgacugcauaauuugugguagugggggacugcguucgcgcuuuccc cug <<<<.<<<<<.<<<<<..........>>>>>>>>>>.<<<<...<<<.<< <<<..........>>>>>.>>>...>>>>.<<<<<<<<<.......>>>> >>.>>>.>>>>...............<<<<<<..<<<<..>>>>..>>>> >>.	?	GO:0000245 ...	P62304	38778104
7	8r08:1f (6.1)	BS01	>8r08:1 gcaggggagauaccaugaucacgaaggugguuuucccagggcgaggcuua uccauugcacuccggaugugcugaccccugcgauuuccccaaauguggga aacucgacugcauaauuugugguagugggggacugcguucgcgcuuuccc cug <<<<.<<<<<.<<<<<..........>>>>>>>>>>.<<<<...<<<.<< <<<..........>>>>>.>>>...>>>>.<<<<<<<<<.......>>>> >>.>>>.>>>>...............<<<<<<..<<<<..>>>>..>>>> >>.	?	GO:0000387 ...	P62306	38778104
8	8r08:1g (6.1)	BS01	>8r08:1 gcaggggagauaccaugaucacgaaggugguuuucccagggcgaggcuua uccauugcacuccggaugugcugaccccugcgauuuccccaaauguggga aacucgacugcauaauuugugguagugggggacugcguucgcgcuuuccc cug <<<<.<<<<<.<<<<<..........>>>>>>>>>>.<<<<...<<<.<< <<<..........>>>>>.>>>...>>>>.<<<<<<<<<.......>>>> >>.>>>.>>>>...............<<<<<<..<<<<..>>>>..>>>> >>.	?	GO:0000245 ...	P62308	38778104
9	8r08:G (6.1)	BS01	>8r08:1 gcaggggagauaccaugaucacgaaggugguuuucccagggcgaggcuua uccauugcacuccggaugugcugaccccugcgauuuccccaaauguggga aacucgacugcauaauuugugguagugggggacugcguucgcgcuuuccc cug <<<<.<<<<<.<<<<<..........>>>>>>>>>>.<<<<...<<<.<< <<<..........>>>>>.>>>...>>>>.<<<<<<<<<.......>>>> >>.>>>.>>>>...............<<<<<<..<<<<..>>>>..>>>> >>.	3.6.4.13	GO:0000354 ...	Q9BUQ8	38778104