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BioLiP
Download all results in tab-seperated text for 11 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		RNA
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    1 7r6q:D
    (2.98)    		 BS01 >7r6q:1
    guuugaccucaaaucagguaggaaagcucaaauuugaaaucugguaccuu
cggugcccgaguuguaauuuggagagggcaacuuuggguuuguaaagugc
cuucgaagagucgcuaagugggugguccaucuaaagcuaauagucgaucc
uaagagauggggaagcuccguuucaaaggccugauuuuaugcaggccacc
aucgaaagggaauccuuccggaaccuggauauggauucuucacacugaau
guggagaaaauccacaggaaggaauaguuuucaugccaggucgua
.........................<<<..<........<<.<<<<<<..
.>>>>>>.>>........>....<<<<<<<.<<<<<..>....>>>>>>>
>>>>...............<<<<<<.>>>>>>..>>>.....((<<<<<<
...<<....<<<....>>>........<<<<<<........>>>>>>...
.>>....>>...<<<....>>>))<<<<.<<<<<<..............<
<<<<<.....>>>>>>............>>.>>>>>>>>>>>>..
    		 3.6.4.13 GO:0000462 ... Q03532 36482249
    2 7r6q:G
    (2.98)    		 BS02 >7r6q:1
    guuugaccucaaaucagguaggaaagcucaaauuugaaaucugguaccuu
cggugcccgaguuguaauuuggagagggcaacuuuggguuuguaaagugc
cuucgaagagucgcuaagugggugguccaucuaaagcuaauagucgaucc
uaagagauggggaagcuccguuucaaaggccugauuuuaugcaggccacc
aucgaaagggaauccuuccggaaccuggauauggauucuucacacugaau
guggagaaaauccacaggaaggaauaguuuucaugccaggucgua
.........................<<<..<........<<.<<<<<<..
.>>>>>>.>>........>....<<<<<<<.<<<<<..>....>>>>>>>
>>>>...............<<<<<<.>>>>>>..>>>.....((<<<<<<
...<<....<<<....>>>........<<<<<<........>>>>>>...
.>>....>>...<<<....>>>))<<<<.<<<<<<..............<
<<<<<.....>>>>>>............>>.>>>>>>>>>>>>..
    		 ? GO:0000470 ... P17076 36482249
    3 7r6q:N
    (2.98)    		 BS01 >7r6q:1
    guuugaccucaaaucagguaggaaagcucaaauuugaaaucugguaccuu
cggugcccgaguuguaauuuggagagggcaacuuuggguuuguaaagugc
cuucgaagagucgcuaagugggugguccaucuaaagcuaauagucgaucc
uaagagauggggaagcuccguuucaaaggccugauuuuaugcaggccacc
aucgaaagggaauccuuccggaaccuggauauggauucuucacacugaau
guggagaaaauccacaggaaggaauaguuuucaugccaggucgua
.........................<<<..<........<<.<<<<<<..
.>>>>>>.>>........>....<<<<<<<.<<<<<..>....>>>>>>>
>>>>...............<<<<<<.>>>>>>..>>>.....((<<<<<<
...<<....<<<....>>>........<<<<<<........>>>>>>...
.>>....>>...<<<....>>>))<<<<.<<<<<<..............<
<<<<<.....>>>>>>............>>.>>>>>>>>>>>>..
    		 ? GO:0002181 ... P05748 36482249
    4 7r6q:X
    (2.98)    		 BS01 >7r6q:1
    guuugaccucaaaucagguaggaaagcucaaauuugaaaucugguaccuu
cggugcccgaguuguaauuuggagagggcaacuuuggguuuguaaagugc
cuucgaagagucgcuaagugggugguccaucuaaagcuaauagucgaucc
uaagagauggggaagcuccguuucaaaggccugauuuuaugcaggccacc
aucgaaagggaauccuuccggaaccuggauauggauucuucacacugaau
guggagaaaauccacaggaaggaauaguuuucaugccaggucgua
.........................<<<..<........<<.<<<<<<..
.>>>>>>.>>........>....<<<<<<<.<<<<<..>....>>>>>>>
>>>>...............<<<<<<.>>>>>>..>>>.....((<<<<<<
...<<....<<<....>>>........<<<<<<........>>>>>>...
.>>....>>...<<<....>>>))<<<<.<<<<<<..............<
<<<<<.....>>>>>>............>>.>>>>>>>>>>>>..
    		 ? GO:0000027 ... P04456 36482249
    5 7r6q:g
    (2.98)    		 BS01 >7r6q:1
    guuugaccucaaaucagguaggaaagcucaaauuugaaaucugguaccuu
cggugcccgaguuguaauuuggagagggcaacuuuggguuuguaaagugc
cuucgaagagucgcuaagugggugguccaucuaaagcuaauagucgaucc
uaagagauggggaagcuccguuucaaaggccugauuuuaugcaggccacc
aucgaaagggaauccuuccggaaccuggauauggauucuucacacugaau
guggagaaaauccacaggaaggaauaguuuucaugccaggucgua
.........................<<<..<........<<.<<<<<<..
.>>>>>>.>>........>....<<<<<<<.<<<<<..>....>>>>>>>
>>>>...............<<<<<<.>>>>>>..>>>.....((<<<<<<
...<<....<<<....>>>........<<<<<<........>>>>>>...
.>>....>>...<<<....>>>))<<<<.<<<<<<..............<
<<<<<.....>>>>>>............>>.>>>>>>>>>>>>..
    		 ? N/A P87262 36482249
    6 7r6q:i
    (2.98)    		 BS01 >7r6q:1
    guuugaccucaaaucagguaggaaagcucaaauuugaaaucugguaccuu
cggugcccgaguuguaauuuggagagggcaacuuuggguuuguaaagugc
cuucgaagagucgcuaagugggugguccaucuaaagcuaauagucgaucc
uaagagauggggaagcuccguuucaaaggccugauuuuaugcaggccacc
aucgaaagggaauccuuccggaaccuggauauggauucuucacacugaau
guggagaaaauccacaggaaggaauaguuuucaugccaggucgua
.........................<<<..<........<<.<<<<<<..
.>>>>>>.>>........>....<<<<<<<.<<<<<..>....>>>>>>>
>>>>...............<<<<<<.>>>>>>..>>>.....((<<<<<<
...<<....<<<....>>>........<<<<<<........>>>>>>...
.>>....>>...<<<....>>>))<<<<.<<<<<<..............<
<<<<<.....>>>>>>............>>.>>>>>>>>>>>>..
    		 ? GO:0002181 ... P05745 36482249
    7 7r6q:m
    (2.98)    		 BS01 >7r6q:1
    guuugaccucaaaucagguaggaaagcucaaauuugaaaucugguaccuu
cggugcccgaguuguaauuuggagagggcaacuuuggguuuguaaagugc
cuucgaagagucgcuaagugggugguccaucuaaagcuaauagucgaucc
uaagagauggggaagcuccguuucaaaggccugauuuuaugcaggccacc
aucgaaagggaauccuuccggaaccuggauauggauucuucacacugaau
guggagaaaauccacaggaaggaauaguuuucaugccaggucgua
.........................<<<..<........<<.<<<<<<..
.>>>>>>.>>........>....<<<<<<<.<<<<<..>....>>>>>>>
>>>>...............<<<<<<.>>>>>>..>>>.....((<<<<<<
...<<....<<<....>>>........<<<<<<........>>>>>>...
.>>....>>...<<<....>>>))<<<<.<<<<<<..............<
<<<<<.....>>>>>>............>>.>>>>>>>>>>>>..
    		 ? GO:0000463 ... Q04660 36482249
    8 7r6q:n
    (2.98)    		 BS01 >7r6q:1
    guuugaccucaaaucagguaggaaagcucaaauuugaaaucugguaccuu
cggugcccgaguuguaauuuggagagggcaacuuuggguuuguaaagugc
cuucgaagagucgcuaagugggugguccaucuaaagcuaauagucgaucc
uaagagauggggaagcuccguuucaaaggccugauuuuaugcaggccacc
aucgaaagggaauccuuccggaaccuggauauggauucuucacacugaau
guggagaaaauccacaggaaggaauaguuuucaugccaggucgua
.........................<<<..<........<<.<<<<<<..
.>>>>>>.>>........>....<<<<<<<.<<<<<..>....>>>>>>>
>>>>...............<<<<<<.>>>>>>..>>>.....((<<<<<<
...<<....<<<....>>>........<<<<<<........>>>>>>...
.>>....>>...<<<....>>>))<<<<.<<<<<<..............<
<<<<<.....>>>>>>............>>.>>>>>>>>>>>>..
    		 ? GO:0000462 ... P53261 36482249
    9 7r6q:t
    (2.98)    		 BS02 >7r6q:1
    guuugaccucaaaucagguaggaaagcucaaauuugaaaucugguaccuu
cggugcccgaguuguaauuuggagagggcaacuuuggguuuguaaagugc
cuucgaagagucgcuaagugggugguccaucuaaagcuaauagucgaucc
uaagagauggggaagcuccguuucaaaggccugauuuuaugcaggccacc
aucgaaagggaauccuuccggaaccuggauauggauucuucacacugaau
guggagaaaauccacaggaaggaauaguuuucaugccaggucgua
.........................<<<..<........<<.<<<<<<..
.>>>>>>.>>........>....<<<<<<<.<<<<<..>....>>>>>>>
>>>>...............<<<<<<.>>>>>>..>>>.....((<<<<<<
...<<....<<<....>>>........<<<<<<........>>>>>>...
.>>....>>...<<<....>>>))<<<<.<<<<<<..............<
<<<<<.....>>>>>>............>>.>>>>>>>>>>>>..
    		 ? GO:0000463 ... P40693 36482249
    10 7r6q:v
    (2.98)    		 BS01 >7r6q:1
    guuugaccucaaaucagguaggaaagcucaaauuugaaaucugguaccuu
cggugcccgaguuguaauuuggagagggcaacuuuggguuuguaaagugc
cuucgaagagucgcuaagugggugguccaucuaaagcuaauagucgaucc
uaagagauggggaagcuccguuucaaaggccugauuuuaugcaggccacc
aucgaaagggaauccuuccggaaccuggauauggauucuucacacugaau
guggagaaaauccacaggaaggaauaguuuucaugccaggucgua
.........................<<<..<........<<.<<<<<<..
.>>>>>>.>>........>....<<<<<<<.<<<<<..>....>>>>>>>
>>>>...............<<<<<<.>>>>>>..>>>.....((<<<<<<
...<<....<<<....>>>........<<<<<<........>>>>>>...
.>>....>>...<<<....>>>))<<<<.<<<<<<..............<
<<<<<.....>>>>>>............>>.>>>>>>>>>>>>..
    		 ? GO:0003674 ... P40007 36482249
    11 7r6q:w
    (2.98)    		 BS01 >7r6q:1
    guuugaccucaaaucagguaggaaagcucaaauuugaaaucugguaccuu
cggugcccgaguuguaauuuggagagggcaacuuuggguuuguaaagugc
cuucgaagagucgcuaagugggugguccaucuaaagcuaauagucgaucc
uaagagauggggaagcuccguuucaaaggccugauuuuaugcaggccacc
aucgaaagggaauccuuccggaaccuggauauggauucuucacacugaau
guggagaaaauccacaggaaggaauaguuuucaugccaggucgua
.........................<<<..<........<<.<<<<<<..
.>>>>>>.>>........>....<<<<<<<.<<<<<..>....>>>>>>>
>>>>...............<<<<<<.>>>>>>..>>>.....((<<<<<<
...<<....<<<....>>>........<<<<<<........>>>>>>...
.>>....>>...<<<....>>>))<<<<.<<<<<<..............<
<<<<<.....>>>>>>............>>.>>>>>>>>>>>>..
    		 2.1.1.167 GO:0005634 ... P25582 36482249
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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