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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 24809 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    17801 5e13:A (1.34) BS01 5J9 4.6.1.18 GO:0003676 ... P10153 26551065 MOAD: Ki=57.8uM
    PDBbind: -logKd/Ki=4.24, Ki=57.8uM
    17802 5e1e:A (2.3) BS01 5JG 2.7.10.2 GO:0004672 ... P23458 26614408 MOAD: ic50=0.022uM
    PDBbind: -logKd/Ki=7.66, IC50=0.022uM
    BindingDB: IC50=39nM
    17803 5e1s:A (2.264) BS01 5JA 2.7.10.1 GO:0004672 ... P06213 26438154 MOAD: Kd=12nM
    PDBbind: -logKd/Ki=7.92, Kd=12nM
    17804 5e28:A (1.3) BS02 BC5 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 26741028 MOAD: Ki=12.3nM
    PDBbind: -logKd/Ki=7.91, Ki=12.3nM
    BindingDB: Ki=12nM
    17805 5e2k:A (1.4) BS02 BX4 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 26741028 MOAD: Ki=9.3nM
    PDBbind: -logKd/Ki=8.03, Ki=9.3nM
    BindingDB: Ki=9.3nM
    17806 5e2k:A (1.4) BS03 BX4 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 26741028 MOAD: Ki=9.3nM
    PDBbind: -logKd/Ki=8.03, Ki=9.3nM
    BindingDB: Ki=9.3nM
    17807 5e2l:A (2.5) BS02 DPN 2.5.1.54 GO:0003849 ... O53512 27128682 MOAD: Kd=93uM
    PDBbind: -logKd/Ki=4.03, Kd=93uM
    17808 5e2l:B (2.5) BS01 DPN 2.5.1.54 GO:0003849 ... O53512 27128682 MOAD: Kd=93uM
    PDBbind: -logKd/Ki=4.03, Kd=93uM
    17809 5e2l:B (2.5) BS03 DPN 2.5.1.54 GO:0003849 ... O53512 27128682 MOAD: Kd=93uM
    PDBbind: -logKd/Ki=4.03, Kd=93uM
    17810 5e2m:A (1.41) BS02 V14 4.2.1.1
    4.2.1.69    		 GO:0004064 ... P00915 28001003 MOAD: Kd=59nM
    PDBbind: -logKd/Ki=7.23, Kd=59nM
    BindingDB: Kd=1100nM
    17811 5e2n:A (1.53) BS02 V14 4.2.1.1 GO:0004089 ... Q8N1Q1 28001003 MOAD: Kd=0.29nM
    PDBbind: -logKd/Ki=9.54, Kd=0.29nM
    BindingDB: Kd=42nM
    17812 5e2o:A (2.08) BS01 5JM 3.4.21.27 GO:0004252 ... P03951 26704266 MOAD: Ki=2nM
    PDBbind: -logKd/Ki=8.70, Ki=2.0nM
    BindingDB: Ki=2.0nM
    17813 5e2p:A (2.11) BS01 7P0 3.4.21.27 GO:0004252 ... P03951 26704266 MOAD: Ki=1.6nM
    PDBbind: -logKd/Ki=8.80, Ki=1.6nM
    BindingDB: Ki=1.6nM
    17814 5e2r:A (1.6) BS02 520 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 26497049 MOAD: Ki=86.2nM
    PDBbind: -logKd/Ki=7.06, Ki=86.2nM
    BindingDB: Ki=86nM
    17815 5e2s:A (1.5) BS02 5CX 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 26741028 MOAD: Ki=0.98nM
    PDBbind: -logKd/Ki=9.01, Ki=0.98nM
    BindingDB: Ki=0.980000nM
    17816 5e3d:A (1.71) BS01 5JL ? N/A P55201 27167503 MOAD: Kd=95uM
    PDBbind: -logKd/Ki=4.02, Kd=95uM
    17817 5e3g:A (1.65) BS01 5JQ ? N/A P55201 27167503 PDBbind: -logKd/Ki=4.30, Kd>50uM
    BindingDB: Kd=>50000nM
    17818 5e3h:A (2.7) BS01 rna 3.6.4.13 GO:0003676 ... O95786 21947008 PDBbind: Kd=0.02nM
    17819 5e3h:A (2.7) BS02 rna 3.6.4.13 GO:0003676 ... O95786 21947008 PDBbind: Kd=0.02nM
    17820 5e3l:A (2.66) BS01 dna ? GO:0000786 ... P0A6R3 26959646 PDBbind: Kd=30nM
    17821 5e3l:A (2.66) BS02 dna ? GO:0000786 ... P0A6R3 26959646 PDBbind: Kd=30nM
    17822 5e3l:B (2.66) BS01 dna ? GO:0000786 ... P0A6R3 26959646 PDBbind: Kd=30nM
    17823 5e3l:B (2.66) BS02 dna ? GO:0000786 ... P0A6R3 26959646 PDBbind: Kd=30nM
    17824 5e3o:A (2.78) BS01 dna ? GO:0000786 ... P0A6R3 26959646 PDBbind: Kd=28nM
    17825 5e3o:A (2.78) BS02 dna ? GO:0000786 ... P0A6R3 26959646 PDBbind: Kd=28nM
    17826 5e3o:B (2.78) BS01 dna ? GO:0000786 ... P0A6R3 26959646 PDBbind: Kd=28nM
    17827 5e3o:B (2.78) BS02 dna ? GO:0000786 ... P0A6R3 26959646 PDBbind: Kd=28nM
    17828 5e5g:A (1.95) BS02 DTR 2.5.1.54 GO:0003849 ... O53512 27128682 MOAD: Kd=700uM
    PDBbind: -logKd/Ki=3.15, Kd=700uM
    17829 5e5g:A (1.95) BS03 DTR 2.5.1.54 GO:0003849 ... O53512 27128682 MOAD: Kd=700uM
    PDBbind: -logKd/Ki=3.15, Kd=700uM
    17830 5e5g:B (1.95) BS01 DTR 2.5.1.54 GO:0003849 ... O53512 27128682 MOAD: Kd=700uM
    PDBbind: -logKd/Ki=3.15, Kd=700uM
    17831 5e5g:B (1.95) BS03 DTR 2.5.1.54 GO:0003849 ... O53512 27128682 MOAD: Kd=700uM
    PDBbind: -logKd/Ki=3.15, Kd=700uM
    17832 5e5g:B (1.95) BS04 DTR 2.5.1.54 GO:0003849 ... O53512 27128682 MOAD: Kd=700uM
    PDBbind: -logKd/Ki=3.15, Kd=700uM
    17833 5e5o:A (2.36) BS01 dna ? GO:0004519 ... F7WD42 26705195 PDBbind: Kd~150nM
    17834 5e5o:A (2.36) BS02 dna ? GO:0004519 ... F7WD42 26705195 PDBbind: Kd~150nM
    17835 5e69:A (1.85) BS01 dna ? GO:0003700 ... P04150 29626214 PDBbind: Kd=17uM
    17836 5e69:A (1.85) BS02 dna ? GO:0003700 ... P04150 29626214 PDBbind: Kd=17uM
    17837 5e69:B (1.85) BS01 dna ? GO:0003700 ... P04150 29626214 PDBbind: Kd=17uM
    17838 5e6a:A (2.197) BS01 dna ? GO:0003700 ... P04150 29626214 PDBbind: Kd>50uM
    17839 5e6a:A (2.197) BS02 dna ? GO:0003700 ... P04150 29626214 PDBbind: Kd>50uM
    17840 5e6a:B (2.197) BS01 dna ? GO:0003700 ... P04150 29626214 PDBbind: Kd>50uM
    17841 5e6c:A (2.2) BS01 dna ? GO:0003700 ... P04150 29626214 PDBbind: Kd=67.9uM
    17842 5e6c:A (2.2) BS02 dna ? GO:0003700 ... P04150 29626214 PDBbind: Kd=67.9uM
    17843 5e6c:B (2.2) BS01 dna ? GO:0003700 ... P04150 29626214 PDBbind: Kd=67.9uM
    17844 5e73:A (1.71) BS01 UO1 ? N/A Q9UIF8 26982797 MOAD: Kd=23uM
    PDBbind: -logKd/Ki=4.64, Kd=23uM
    BindingDB: Kd=23000nM
    17845 5e74:A (1.783) BS01 5KH ? N/A Q9UIF8 26982797 MOAD: Kd=39uM
    PDBbind: -logKd/Ki=4.41, Kd=39uM
    BindingDB: Kd=39000nM, IC50=27000nM
    17846 5e7n:A (1.21) BS01 5KR ? GO:0003677 ... P27694 26748787 MOAD: Kd=30uM
    PDBbind: -logKd/Ki=6.09, Kd=0.81uM
    17847 5e7r:A (2.11) BS01 5KW 2.7.11.25 GO:0000287 ... O43318
    Q15750    		 28011204 PDBbind: -logKd/Ki=7.60, IC50=25nM
    17848 5e80:B (2.6) BS01 5KP ? GO:0005095 ... O43924 27094677 PDBbind: -logKd/Ki=8.30, Kd=5nM
    17849 5e88:A (1.6) BS01 5KT ? GO:0030246 ... P17931 27356186 MOAD: Kd=0.065uM
    PDBbind: -logKd/Ki=7.19, Kd=0.065uM
    17850 5e89:A (1.5) BS01 TD2 ? GO:0030246 ... P17931 27356186 MOAD: Kd=0.014uM
    PDBbind: -logKd/Ki=7.85, Kd=0.014uM
    17851 5e8a:A (1.5) BS01 5KS ? GO:0030246 ... P17931 27356186 MOAD: Kd=0.034uM
    PDBbind: -logKd/Ki=7.47, Kd=0.034uM
    17852 5e8i:A (3.45) BS01 dna ? GO:0003700 ... Q01543 26618620 PDBbind: Kd=16nM
    17853 5e8i:A (3.45) BS02 dna ? GO:0003700 ... Q01543 26618620 PDBbind: Kd=16nM
    17854 5e8i:D (3.45) BS01 dna ? GO:0003700 ... Q01543 26618620 PDBbind: Kd=16nM
    17855 5e8i:D (3.45) BS02 dna ? GO:0003700 ... Q01543 26618620 PDBbind: Kd=16nM
    17856 5e8i:D (3.45) BS03 dna ? GO:0003700 ... Q01543 26618620 PDBbind: Kd=16nM
    17857 5e8i:G (3.45) BS01 dna ? GO:0003700 ... Q01543 26618620 PDBbind: Kd=16nM
    17858 5e8i:G (3.45) BS02 dna ? GO:0003700 ... Q01543 26618620 PDBbind: Kd=16nM
    17859 5e8i:J (3.45) BS01 dna ? GO:0003700 ... Q01543 26618620 PDBbind: Kd=16nM
    17860 5e8i:J (3.45) BS02 dna ? GO:0003700 ... Q01543 26618620 PDBbind: Kd=16nM
    17861 5e8r:A (2.55) BS02 5L6 2.1.1.319 GO:0000122 ... Q96LA8 26598975 PDBbind: -logKd/Ki=8.70, Kd=2nM
    BindingDB: IC50=4.0nM, Ki=0.8nM, Kd=6nM
    17862 5e8w:A (1.86) BS01 STU 2.7.11.30 GO:0004672 ... P36897 27139629 PDBbind: -logKd/Ki=4.39, IC50=41uM
    17863 5e8z:A (1.51) BS01 5L4 2.7.11.30 GO:0004672 ... P36897 27139629 PDBbind: -logKd/Ki=5.91, IC50=1.243uM
    17864 5e90:A (2.05) BS01 5L4 2.7.11.30 GO:0004672 ... P36897 27139629 PDBbind: -logKd/Ki=7.85, IC50=0.014uM
    17865 5e91:A (2.42) BS01 5L4 2.7.11.30 GO:0004672 ... P37173 27139629 PDBbind: -logKd/Ki=8.40, IC50=0.004uM
    17866 5ea3:F (2.75) BS01 5NK ? GO:0019064 ... P03420 26641933 PDBbind: -logKd/Ki=8.77, Kd=1.7nM
    17867 5ea4:F (2.3) BS01 5NM ? GO:0019064 ... P03420 26641933 MOAD: Kd=7.8nM
    PDBbind: -logKd/Ki=8.11, Kd=7.8nM
    17868 5ea5:F (3.05) BS01 TM3 ? GO:0019064 ... P03420 26641933 PDBbind: -logKd/Ki=8.06, Kd=8.7nM
    17869 5ea6:F (2.75) BS01 5NP ? GO:0019064 ... P03420 26641933 PDBbind: -logKd/Ki=7.41, Kd=39nM
    17870 5eak:A (2.8) BS01 24R 2.7.11.1
    2.7.11.26    		 GO:0004672 ... Q7KZI7 27491711 PDBbind: -logKd/Ki=9.30, IC50=0.5nM
    17871 5eb3:A (2.4) BS01 UEG ? N/A Q9I4L4 27113583 MOAD: Kd=35.2mM
    PDBbind: -logKd/Ki=1.45, Kd=35.2mM
    17872 5ece:A (2.2) BS01 5N2 2.4.2.-
    2.4.2.30    		 GO:0003950 ... O95271 26546219 MOAD: ic50=9nM
    PDBbind: -logKd/Ki=8.05, IC50=9nM
    BindingDB: IC50=9.0nM
    17873 5ech:A (2.14) BS01 JAA 6.3.2.52 GO:0005515 ... Q9SKE2 28223489 PDBbind: -logKd/Ki=3.80, Kd=0.16mM
    17874 5eci:A (1.56) BS01 JAA 6.3.2.52 GO:0005515 ... Q9SKE2 28223489 PDBbind: -logKd/Ki=3.80, Kd=0.16mM
    17875 5ect:A (1.3) BS01 DUP 3.6.1.23 GO:0000287 ... P9WNS5 27740761 MOAD: Kd=5.2uM
    PDBbind: -logKd/Ki=5.28, Kd=5.2uM
    17876 5ecv:A (2.085) BS02 5M2 2.3.3.9 GO:0000287 ... P9WK17 27738104 PDBbind: -logKd/Ki=6.77, IC50=0.17uM
    17877 5edb:A (1.18) BS01 5M8 ? GO:0005324 ... P15090 26878596 MOAD: Ki=0.1uM
    PDBbind: -logKd/Ki=7.00, Ki=0.1uM
    BindingDB: Ki=105nM
    17878 5edc:A (1.29) BS01 5M7 ? GO:0005324 ... P15090 26878596 MOAD: Ki=0.022uM
    PDBbind: -logKd/Ki=7.66, Ki=0.022uM
    BindingDB: Ki=22nM
    17879 5edd:A (1.97) BS01 DUP 3.6.1.23 GO:0000287 ... P9WNS5 27740761 MOAD: Kd=5.7uM
    PDBbind: -logKd/Ki=5.24, Kd=5.7uM
    17880 5edi:A (2.2) BS02 5M9 3.1.4.17 GO:0004114 ... Q9Y233 26878596 MOAD: ic50=0.3nM
    PDBbind: -logKd/Ki=9.52, IC50=0.3nM
    BindingDB: IC50=0.28nM
    17881 5edl:A (1.95) BS01 VIB ? GO:0005886 ... O34738 27447050 MOAD: Kd=4.5nM
    PDBbind: -logKd/Ki=8.35, Kd=4.5nM
    17882 5edn:A (3.2) BS01 dna ? GO:0000981 ... Q92826 29638214 PDBbind: Kd=46nM
    17883 5edn:A (3.2) BS02 dna ? GO:0000981 ... Q92826 29638214 PDBbind: Kd=46nM
    17884 5edn:A (3.2) BS03 dna ? GO:0000981 ... Q92826 29638214 PDBbind: Kd=46nM
    17885 5edn:B (3.2) BS01 dna ? GO:0000981 ... Q92826 29638214 PDBbind: Kd=46nM
    17886 5edn:B (3.2) BS02 dna ? GO:0000981 ... Q92826 29638214 PDBbind: Kd=46nM
    17887 5edn:B (3.2) BS03 dna ? GO:0000981 ... Q92826 29638214 PDBbind: Kd=46nM
    17888 5edn:G (3.2) BS01 dna ? GO:0000981 ... Q92826 29638214 PDBbind: Kd=46nM
    17889 5edn:G (3.2) BS02 dna ? GO:0000981 ... Q92826 29638214 PDBbind: Kd=46nM
    17890 5edn:G (3.2) BS03 dna ? GO:0000981 ... Q92826 29638214 PDBbind: Kd=46nM
    17891 5edn:J (3.2) BS01 dna ? GO:0000981 ... Q92826 29638214 PDBbind: Kd=46nM
    17892 5edn:J (3.2) BS02 dna ? GO:0000981 ... Q92826 29638214 PDBbind: Kd=46nM
    17893 5edq:A (2.8) BS01 5N3 2.7.10.1 GO:0004672 ... P00533 26639762 PDBbind: -logKd/Ki=8.70, Ki=2nM
    BindingDB: Ki=1.5nM
    17894 5edr:A (2.6) BS01 5N4 2.7.10.1 GO:0004672 ... P00533 26639762 PDBbind: -logKd/Ki=7.46, Ki=34.3nM
    BindingDB: Ki=34nM
    17895 5eds:A (2.8) BS01 5MT 2.7.11.1
    2.7.1.137
    2.7.1.153
    2.7.1.154    		 GO:0016301 ... P48736 26652588 PDBbind: -logKd/Ki=5.54, IC50=2.88uM
    17896 5edu:B (2.79) BS03 TSN 3.5.1.-
    3.5.1.98    		 GO:0005515 ... P0AEX9
    Q9UBN7    		 27454933 PDBbind: -logKd/Ki=8.66, Ki=2.2nM
    17897 5ee7:A (2.5) BS01 5MV 3.2.1.17 GO:0003796 ... P00720
    P47871    		 27111510 MOAD: Kd=0.62nM
    PDBbind: -logKd/Ki=9.21, Kd=0.62nM
    17898 5ee8:A (1.54) BS01 ZXM 3.5.2.6 GO:0008800 ... P0AD64 26729491 PDBbind: -logKd/Ki=6.89, IC50=0.13uM
    17899 5eea:A (2.195) BS01 dna ? GO:0000981 ... Q92826 29638214 PDBbind: Kd=41nM
    17900 5eea:A (2.195) BS02 dna ? GO:0000981 ... Q92826 29638214 PDBbind: Kd=41nM
    17901 5eea:A (2.195) BS03 dna ? GO:0000981 ... Q92826 29638214 PDBbind: Kd=41nM
    17902 5eea:B (2.195) BS01 dna ? GO:0000981 ... Q92826 29638214 PDBbind: Kd=41nM
    17903 5eea:B (2.195) BS02 dna ? GO:0000981 ... Q92826 29638214 PDBbind: Kd=41nM
    17904 5eea:B (2.195) BS03 dna ? GO:0000981 ... Q92826 29638214 PDBbind: Kd=41nM
    17905 5eea:G (2.195) BS01 dna ? GO:0000981 ... Q92826 29638214 PDBbind: Kd=41nM
    17906 5eea:G (2.195) BS02 dna ? GO:0000981 ... Q92826 29638214 PDBbind: Kd=41nM
    17907 5eea:J (2.195) BS01 dna ? GO:0000981 ... Q92826 29638214 PDBbind: Kd=41nM
    17908 5eea:J (2.195) BS02 dna ? GO:0000981 ... Q92826 29638214 PDBbind: Kd=41nM
    17909 5eec:A (1.87) BS01 ZXM 3.5.2.6 GO:0008800 ... Q9F663 26729491 PDBbind: -logKd/Ki=7.10, IC50=0.08uM
    17910 5eef:A (2.151) BS02 TSN ? N/A F8W4B7 27454933 PDBbind: -logKd/Ki=8.32, Ki=4.8nM
    17911 5eei:A (1.32) BS02 SHH 3.5.1.98 N/A F8W4B7 27454933 PDBbind: -logKd/Ki=9.22, Ki=0.6nM
    17912 5eek:A (1.59) BS02 TSN 3.5.1.98 N/A F8W4B7 27454933 PDBbind: -logKd/Ki=9.10, Ki=0.8nM
    17913 5een:B (1.861) BS02 5OG 3.5.1.98 N/A F8W4B7 27454933 PDBbind: -logKd/Ki=8.96, Ki=1.1nM
    17914 5ef7:A (1.9) BS02 5OJ 3.5.1.98 N/A F8W4B7 27454933 MOAD: Ki=1nM
    PDBbind: -logKd/Ki=9.00, Ki=1nM
    17915 5ef8:A (2.6) BS02 LBH 3.5.1.98 N/A F8W4B7 27454933 PDBbind: -logKd/Ki=8.85, Ki=1.4nM
    17916 5efa:A (1.9) BS01 MGT ? N/A Q9QLL6 26559973 MOAD: Kd=14.7uM
    PDBbind: -logKd/Ki=4.83, Kd=14.7uM
    17917 5efb:D (2.543) BS02 5OK 3.5.1.98 N/A F8W4B7 27454933 PDBbind: -logKd/Ki=8.37, Ki=4.3nM
    17918 5efc:A (1.9) BS01 GTP ? N/A Q9QLL6 26559973 MOAD: Kd=14.1uM
    PDBbind: -logKd/Ki=4.85, Kd=14.1uM
    17919 5efh:D (2.162) BS02 FKS 3.5.1.98 N/A F8W4B7 27454933 MOAD: Ki=0.8uM
    PDBbind: -logKd/Ki=6.10, Ki=800nM
    17920 5eg4:A (1.32) BS02 5N7 3.4.21.4 GO:0004175 ... P00760 27280436 MOAD: Ki=21nM
    PDBbind: -logKd/Ki=7.68, Ki=21nM
    17921 5ega:A (2.15) BS03 GK0 3.1.-.- GO:0003723 ... C3W5S0 27510745 MOAD: ic50=8.7uM
    PDBbind: -logKd/Ki=5.06, IC50=8.7uM
    17922 5egb:A (1.977) BS01 dna 2.1.1.-
    2.1.1.354
    2.1.1.355
    2.1.1.359
    2.1.1.361
    2.1.1.362    		 N/A Q9NQV7 26833727 PDBbind: Kd=0.034uM
    17923 5egb:A (1.977) BS02 dna 2.1.1.-
    2.1.1.354
    2.1.1.355
    2.1.1.359
    2.1.1.361
    2.1.1.362    		 N/A Q9NQV7 26833727 PDBbind: Kd=0.034uM
    17924 5egm:A (1.841) BS01 5NY 3.4.21.22 GO:0004252 ... P00740 26318999 MOAD: Ki=2.4nM
    PDBbind: -logKd/Ki=8.62, Ki=2.4nM
    BindingDB: IC50=2.38nM
    17925 5egs:A (2.15) BS02 5NR 2.1.1.319 GO:0000122 ... Q96LA8 26824386 MOAD: Kd=0.97uM
    PDBbind: -logKd/Ki=6.01, Kd=0.97uM
    BindingDB: Kd=970nM, IC50=21000nM
    17926 5egs:A (2.15) BS03 5NR 2.1.1.319 GO:0000122 ... Q96LA8 26824386 MOAD: Kd=0.97uM
    PDBbind: -logKd/Ki=6.01, Kd=0.97uM
    BindingDB: Kd=970nM, IC50=21000nM
    17927 5egu:A (2.21) BS01 5NQ ? N/A O60885 26735842 MOAD: Kd=1.4uM
    PDBbind: -logKd/Ki=5.85, Kd=1.4uM
    BindingDB: IC50=5000nM, Kd=1400nM
    17928 5eh0:A (2.18) BS01 5NW 2.7.12.1 GO:0004672 ... P33981 27055065 MOAD: Ki=0.0005uM
    PDBbind: -logKd/Ki=7.74, IC50=0.018uM
    BindingDB: IC50=140nM, Ki=0.440000nM
    17929 5eh2:E (2.05) BS01 dna 2.1.1.-
    2.1.1.354
    2.1.1.355
    2.1.1.359
    2.1.1.361
    2.1.1.362    		 N/A Q9NQV7 26833727 PDBbind: Kd=28nM
    17930 5eh2:E (2.05) BS02 dna 2.1.1.-
    2.1.1.354
    2.1.1.355
    2.1.1.359
    2.1.1.361
    2.1.1.362    		 N/A Q9NQV7 26833727 PDBbind: Kd=28nM
    17931 5eh2:F (2.05) BS01 dna 2.1.1.-
    2.1.1.354
    2.1.1.355
    2.1.1.359
    2.1.1.361
    2.1.1.362    		 N/A Q9NQV7 26833727 PDBbind: Kd=28nM
    17932 5eh2:F (2.05) BS02 dna 2.1.1.-
    2.1.1.354
    2.1.1.355
    2.1.1.359
    2.1.1.361
    2.1.1.362    		 N/A Q9NQV7 26833727 PDBbind: Kd=28nM
    17933 5eh5:A (1.207) BS02 XCZ 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 26882437 MOAD: Kd=1.35uM
    PDBbind: -logKd/Ki=5.87, Kd=1.35uM
    17934 5eh7:A (1.425) BS02 5O5 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 26882437 MOAD: Kd=330uM
    PDBbind: -logKd/Ki=3.48, Kd=330uM
    17935 5eh8:A (1.381) BS02 5O6 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 26882437 MOAD: Kd=791uM
    PDBbind: -logKd/Ki=3.10, Kd=791uM
    17936 5ehe:A (1.5) BS02 WWO 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 28001003 PDBbind: -logKd/Ki=8.32, Kd=4.8nM
    BindingDB: Kd=6.1nM
    17937 5ehg:A (2.02) BS02 5O0 2.1.1.56
    2.1.1.57
    2.7.7.48
    3.4.21.91
    3.6.1.15
    3.6.4.13    		 GO:0004482 ... P27915 27750202 PDBbind: -logKd/Ki=3.43, IC50=369uM
    17938 5ehi:A (1.303) BS02 5O3 2.1.1.56
    2.1.1.57
    2.7.7.48
    3.4.21.91
    3.6.1.15
    3.6.4.13    		 GO:0004482 ... P27915 27750202 PDBbind: -logKd/Ki=3.34, IC50=452uM
    17939 5ehn:A (2.6) BS01 5NZ 3.1.1.7 GO:0001919 ... P21836 26731630 PDBbind: -logKd/Ki=11.64, Ki=2.3pM
    BindingDB: Kd=0.033000nM
    17940 5ehp:A (1.85) BS01 5OA 3.1.3.48 GO:0004725 ... Q06124 27347692 MOAD: ic50=12uM
    PDBbind: -logKd/Ki=4.92, IC50=12uM
    17941 5ehq:A (2.5) BS01 5O2 3.1.1.7 GO:0001919 ... P21836 26731630 MOAD: Ki=33pM
    PDBbind: -logKd/Ki=10.48, Ki=33pM
    17942 5ehr:A (1.7) BS01 5OD 3.1.3.48 GO:0004725 ... Q06124 27362227 MOAD: Kd=73nM
    PDBbind: -logKd/Ki=7.14, Kd=73nM
    BindingDB: IC50=70.0nM
    17943 5ehv:A (1.208) BS01 5ON 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 26882437 MOAD: Kd=826uM
    PDBbind: -logKd/Ki=3.08, Kd=826uM
    17944 5ehw:A (1.392) BS01 5OO 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 26882437 MOAD: Kd=1005uM
    PDBbind: -logKd/Ki=3.00, Kd=1005uM
    17945 5ehy:A (2.26) BS01 5O4 2.7.12.1 GO:0004672 ... P33981 27055065 MOAD: ic50=0.81uM
    PDBbind: -logKd/Ki=6.09, IC50=0.81uM
    17946 5ei2:A (2.67) BS01 5O7 2.7.12.1 GO:0004672 ... P33981 27055065 PDBbind: -logKd/Ki=7.34, IC50=0.046uM
    BindingDB: IC50=4840nM
    17947 5ei3:A (1.71) BS02 5O8 ? GO:0000082 ... P06730 27592390 MOAD: Kd=56.5uM
    PDBbind: -logKd/Ki=4.25, Kd=56.5uM
    17948 5ei4:A (1.05) BS01 5NV ? N/A O60885 26735842 MOAD: ic50=26.4uM
    PDBbind: -logKd/Ki=4.58, IC50=26.4uM
    17949 5ei6:A (2.01) BS01 5OQ 2.7.12.1 GO:0004672 ... P33981 27055065 MOAD: ic50=0.099uM
    PDBbind: -logKd/Ki=7.00, IC50=0.099uM
    BindingDB: IC50=74nM
    17950 5ei8:A (2.17) BS01 5OE 2.7.12.1 GO:0004672 ... P33981 27055065 MOAD: ic50=0.008uM
    PDBbind: -logKd/Ki=8.10, IC50=0.008uM
    BindingDB: IC50=8nM
    17951 5ei9:E (1.921) BS01 dna 2.1.1.-
    2.1.1.354
    2.1.1.355
    2.1.1.359
    2.1.1.361
    2.1.1.362    		 N/A Q9NQV7 26833727 PDBbind: Kd=36nM
    17952 5ei9:E (1.921) BS02 dna 2.1.1.-
    2.1.1.354
    2.1.1.355
    2.1.1.359
    2.1.1.361
    2.1.1.362    		 N/A Q9NQV7 26833727 PDBbind: Kd=36nM
    17953 5ei9:F (1.921) BS01 dna 2.1.1.-
    2.1.1.354
    2.1.1.355
    2.1.1.359
    2.1.1.361
    2.1.1.362    		 N/A Q9NQV7 26833727 PDBbind: Kd=36nM
    17954 5ei9:F (1.921) BS02 dna 2.1.1.-
    2.1.1.354
    2.1.1.355
    2.1.1.359
    2.1.1.361
    2.1.1.362    		 N/A Q9NQV7 26833727 PDBbind: Kd=36nM
    17955 5eie:A (2.1) BS01 TZ2 3.1.1.7 GO:0001919 ... P21836 26731630 MOAD: Ki=23000pM
    PDBbind: -logKd/Ki=7.64, Ki=23nM
    17956 5eif:A (1.5) BS02 4M0 2.1.1.56
    2.1.1.57
    2.7.7.48
    3.4.21.91
    3.6.1.15
    3.6.4.13    		 GO:0004482 ... P27915 27750202 PDBbind: -logKd/Ki=2.55, IC50=2.8mM
    17957 5eij:A (1.99) BS02 5OT 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 26810836 PDBbind: -logKd/Ki=5.31, Ki=4860nM
    BindingDB: Ki=1025nM
    17958 5eim:A (1.54) BS01 rna ? GO:0003723 ... O74958 28735863 PDBbind: Kd=1.1uM
    17959 5eim:B (1.54) BS01 rna ? GO:0003723 ... O74958 28735863 PDBbind: Kd=1.1uM
    17960 5eim:B (1.54) BS02 rna ? GO:0003723 ... O74958 28735863 PDBbind: Kd=1.1uM
    17961 5eis:A (1.6) BS01 5OU ? N/A O60885 26735842 MOAD: Kd=1.8uM
    PDBbind: -logKd/Ki=5.74, Kd=1.8uM
    BindingDB: IC50=1900nM, Kd=1800nM
    17962 5eiw:A (1.611) BS02 X0V 2.1.1.56
    2.1.1.57
    2.7.7.48
    3.4.21.91
    3.6.1.15
    3.6.4.13    		 GO:0004482 ... Q6YMS4 27750202 PDBbind: -logKd/Ki=2.05, IC50=9mM
    17963 5eje:A (1.9) BS01 AP5 2.7.4.3 GO:0000287 ... P69441 28559350 PDBbind: -logKd/Ki=5.60, Kd=2.5uM
    17964 5ejl:A (2.3) BS01 C2E ? GO:0000166 ... G3FT00 27650952 MOAD: Kd=0.24uM
    PDBbind: -logKd/Ki=6.62, Kd=0.24uM
    17965 5ejl:A (2.3) BS02 C2E ? GO:0000166 ... G3FT00 27650952 MOAD: Kd=0.24uM
    PDBbind: -logKd/Ki=6.62, Kd=0.24uM
    17966 5ejv:A (2.58) BS02 444 ? GO:0003677 ... P51449 27080181 PDBbind: -logKd/Ki=6.69, IC50=0.204uM
    BindingDB: IC50=60nM, EC50=54nM, Ki=51nM
    17967 5ejw:A (2.6) BS01 5PZ ? GO:0035102 ... Q8VDS3 27326334 PDBbind: -logKd/Ki=3.30, Kd=500uM
    17968 5ek0:A (3.53) BS01 5P2 ? GO:0005216 ... A8EVM5
    Q15858    		 26680203 PDBbind: -logKd/Ki=7.68, Ki=20.7nM
    17969 5ek9:A (2.08) BS01 5P4 ? N/A P25440 29170024 PDBbind: -logKd/Ki=7.33, Kd=47nM
    BindingDB: Kd=47nM, IC50=2020nM, EC50=480nM
    17970 5ekh:A (1.34) BS02 5RD 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 26692420 MOAD: Kd=1.11uM
    PDBbind: -logKd/Ki=5.95, Kd=1.11uM
    17971 5ekj:A (1.129) BS02 TG4 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 26692420 MOAD: Kd=1uM
    PDBbind: -logKd/Ki=6.00, Kd=1uM
    17972 5ekm:A (1.33) BS02 TG5 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 26692420 MOAD: Kd=0.48uM
    PDBbind: -logKd/Ki=6.32, Kd=0.48uM
    17973 5ekn:A (2.594) BS01 N58 2.7.11.24 GO:0000165 ... O15264 27369736 PDBbind: -logKd/Ki=5.72, Kd=1.9uM
    17974 5eko:A (2.0) BS01 N17 2.7.11.24 GO:0000165 ... O15264 27369736 MOAD: ic50=15785nM
    PDBbind: -logKd/Ki=4.80, IC50=15785nM
    BindingDB: IC50=15785nM
    17975 5ekx:A (1.76) BS02 2CQ 2.1.1.56
    2.1.1.57
    2.7.7.48
    3.4.21.91
    3.6.1.15
    3.6.4.13    		 GO:0004482 ... P27915 27750202 PDBbind: -logKd/Ki=2.03, IC50=9.3mM
    17976 5el2:A (1.75) BS01 KBR N/A GO:0005549 ... N/A 27535661 PDBbind: -logKd/Ki=4.47, Kd=0.034mM
    17977 5el2:A (1.75) BS02 KBR N/A GO:0005549 ... N/A 27535661 PDBbind: -logKd/Ki=4.47, Kd=0.034mM
    17978 5el2:B (1.75) BS01 KBR N/A GO:0005549 ... N/A 27535661 PDBbind: -logKd/Ki=4.47, Kd=0.034mM
    17979 5el2:B (1.75) BS02 KBR N/A GO:0005549 ... N/A 27535661 PDBbind: -logKd/Ki=4.47, Kd=0.034mM
    17980 5el9:A (1.1) BS01 5DL 4.2.1.19 GO:0000105 ... O23346 27717128 MOAD: Ki=23nM
    PDBbind: -logKd/Ki=7.64, Ki=23.0nM
    17981 5eld:A (1.4) BS01 FUC ? GO:0005576 ... D6R7L2 27082955 PDBbind: -logKd/Ki=2.66, Kd=2.19mM
    17982 5eld:A (1.4) BS02 FUC ? GO:0005576 ... D6R7L2 27082955 PDBbind: -logKd/Ki=2.66, Kd=2.19mM
    17983 5eld:A (1.4) BS03 GAL ? GO:0005576 ... D6R7L2 27082955 PDBbind: -logKd/Ki=2.66, Kd=2.19mM
    17984 5eld:E (1.4) BS01 FUC ? GO:0005576 ... D6R7L2 27082955 PDBbind: -logKd/Ki=2.66, Kd=2.19mM
    17985 5eld:E (1.4) BS02 FUC ? GO:0005576 ... D6R7L2 27082955 PDBbind: -logKd/Ki=2.66, Kd=2.19mM
    17986 5eld:E (1.4) BS03 GAL ? GO:0005576 ... D6R7L2 27082955 PDBbind: -logKd/Ki=2.66, Kd=2.19mM
    17987 5ele:D (1.6) BS01 GAL ? GO:0005515 ... P01556 27082955 PDBbind: -logKd/Ki=1.52, Kd>30mM
    17988 5ele:D (1.6) BS02 FUC ? GO:0005515 ... P01556 27082955 PDBbind: -logKd/Ki=1.52, Kd>30mM
    17989 5ele:D (1.6) BS03 FUC ? GO:0005515 ... P01556 27082955 PDBbind: -logKd/Ki=1.52, Kd>30mM
    17990 5elf:A (1.55) BS01 GLC ? GO:0005515 ... P01556 27082955 PDBbind: -logKd/Ki=2.34, Kd=4.57mM
    17991 5elf:A (1.55) BS02 GAL ? GO:0005515 ... P01556 27082955 PDBbind: -logKd/Ki=2.34, Kd=4.57mM
    17992 5elf:A (1.55) BS03 FUC ? GO:0005515 ... P01556 27082955 PDBbind: -logKd/Ki=2.34, Kd=4.57mM
    17993 5elf:E (1.55) BS01 GLC ? GO:0005515 ... P01556 27082955 PDBbind: -logKd/Ki=2.34, Kd=4.57mM
    17994 5elf:E (1.55) BS02 GAL ? GO:0005515 ... P01556 27082955 PDBbind: -logKd/Ki=2.34, Kd=4.57mM
    17995 5elf:E (1.55) BS03 FUC ? GO:0005515 ... P01556 27082955 PDBbind: -logKd/Ki=2.34, Kd=4.57mM
    17996 5elv:A (1.92) BS01 5PX ? GO:0015276 ... P19491 27276258 MOAD: Kd=0.16uM
    PDBbind: -logKd/Ki=6.80, Kd=0.16uM
    17997 5elv:A (1.92) BS03 5PX ? GO:0015276 ... P19491 27276258 MOAD: Kd=0.16uM
    PDBbind: -logKd/Ki=6.80, Kd=0.16uM
    17998 5elv:B (1.92) BS01 5PX ? GO:0015276 ... P19491 27276258 MOAD: Kd=0.16uM
    PDBbind: -logKd/Ki=6.80, Kd=0.16uM
    17999 5elv:B (1.92) BS02 5PX ? GO:0015276 ... P19491 27276258 MOAD: Kd=0.16uM
    PDBbind: -logKd/Ki=6.80, Kd=0.16uM
    18000 5elw:A (1.4) BS01 5LD 4.2.1.19 GO:0000105 ... O23346 27717128 MOAD: Ki=15nM
    PDBbind: -logKd/Ki=7.85, Ki=14nM
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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