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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 24809 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    17601 5d2r:A (1.9) BS04 56W ? GO:0046872 ... B5ZAD9 26735022 MOAD: Ki=1.5uM
    PDBbind: -logKd/Ki=5.82, Ki=1.5uM
    17602 5d39:A (3.2) BS01 dna ? GO:0003677 ... P42226 27803324 PDBbind: Kd=1.8uM
    17603 5d39:A (3.2) BS02 dna ? GO:0003677 ... P42226 27803324 PDBbind: Kd=1.8uM
    17604 5d39:B (3.2) BS01 dna ? GO:0003677 ... P42226 27803324 PDBbind: Kd=1.8uM
    17605 5d39:B (3.2) BS02 dna ? GO:0003677 ... P42226 27803324 PDBbind: Kd=1.8uM
    17606 5d39:C (3.2) BS01 dna ? GO:0003677 ... P42226 27803324 PDBbind: Kd=1.8uM
    17607 5d39:C (3.2) BS02 dna ? GO:0003677 ... P42226 27803324 PDBbind: Kd=1.8uM
    17608 5d39:D (3.2) BS01 dna ? GO:0003677 ... P42226 27803324 PDBbind: Kd=1.8uM
    17609 5d39:D (3.2) BS02 dna ? GO:0003677 ... P42226 27803324 PDBbind: Kd=1.8uM
    17610 5d3c:A (1.314) BS06 56O 3.4.24.65 GO:0004222 ... P39900 27996256 PDBbind: -logKd/Ki=10.40, Kd=40pM
    17611 5d3g:A (2.3) BS01 dna 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P03366 26296781 PDBbind: Kd=163pM
    17612 5d3g:C (2.3) BS01 dna 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P03366 26296781 PDBbind: Kd=163pM
    17613 5d3h:A (1.7) BS01 57G ? N/A O60885 26731611 MOAD: Kd=7.9uM
    PDBbind: -logKd/Ki=5.10, Kd=7.9uM
    BindingDB: Kd=7900nM
    17614 5d3j:A (1.7) BS01 L33 ? N/A O60885 26731611 MOAD: Kd=5.7uM
    PDBbind: -logKd/Ki=5.24, Kd=5.7uM
    BindingDB: Kd=5700nM
    17615 5d3l:A (1.5) BS01 57F ? N/A O60885 26731611 MOAD: Kd=0.88uM
    PDBbind: -logKd/Ki=6.06, Kd=0.88uM
    BindingDB: Kd=880nM
    17616 5d3n:A (2.15) BS01 L40 ? N/A O60885 26731611 MOAD: Kd=9.2uM
    PDBbind: -logKd/Ki=5.04, Kd=9.2uM
    BindingDB: Kd=9200nM
    17617 5d3p:A (1.95) BS01 57E ? N/A O60885 26731611 MOAD: Kd=7.4uM
    PDBbind: -logKd/Ki=5.13, Kd=7.4uM
    17618 5d3s:A (1.75) BS01 579 ? N/A O60885 26731611 MOAD: Kd=1.3uM
    PDBbind: -logKd/Ki=5.89, Kd=1.3uM
    BindingDB: Kd=1300nM
    17619 5d3t:A (1.93) BS01 56Y ? N/A O60885 26731611 MOAD: Kd=12uM
    PDBbind: -logKd/Ki=4.92, Kd=12uM
    BindingDB: Kd=12000nM
    17620 5d3x:A (1.69) BS01 4IP ? N/A Q8TCU6 27150042 MOAD: Kd=440nM
    PDBbind: -logKd/Ki=6.36, Kd=440nM
    17621 5d45:A (1.65) BS01 57P ? GO:0005324 ... P15090 27096055 MOAD: Ki=0.12uM
    PDBbind: -logKd/Ki=6.92, Ki=0.12uM
    BindingDB: Ki=120nM
    17622 5d47:A (1.7) BS01 L19 ? GO:0005324 ... P15090 27096055 MOAD: Ki=0.1uM
    PDBbind: -logKd/Ki=7.00, Ki=0.10uM
    BindingDB: Ki=100nM
    17623 5d48:A (1.81) BS01 L96 ? GO:0005324 ... P15090 27096055 MOAD: Ki=0.03uM
    PDBbind: -logKd/Ki=7.52, Ki=0.03uM
    BindingDB: Ki=30nM
    17624 5d4a:A (1.7) BS01 57Q ? GO:0005324 ... P15090 27096055 PDBbind: -logKd/Ki=5.85, Ki>1.4uM
    BindingDB: Ki=>1400nM
    17625 5d4r:A (2.07) BS01 dna ? GO:0003700 ... P96711 26511320 PDBbind: Kd=247.6nM
    17626 5d4r:A (2.07) BS02 dna ? GO:0003700 ... P96711 26511320 PDBbind: Kd=247.6nM
    17627 5d4r:B (2.07) BS01 dna ? GO:0003700 ... P96711 26511320 PDBbind: Kd=247.6nM
    17628 5d4r:B (2.07) BS02 dna ? GO:0003700 ... P96711 26511320 PDBbind: Kd=247.6nM
    17629 5d4s:A (1.972) BS01 dna ? GO:0003700 ... P96711 26511320 PDBbind: Kd=277nM
    17630 5d4s:A (1.972) BS02 dna ? GO:0003700 ... P96711 26511320 PDBbind: Kd=277nM
    17631 5d4s:B (1.972) BS01 dna ? GO:0003700 ... P96711 26511320 PDBbind: Kd=277nM
    17632 5d4s:B (1.972) BS02 dna ? GO:0003700 ... P96711 26511320 PDBbind: Kd=277nM
    17633 5d6e:A (1.49) BS01 94A 3.4.11.18 GO:0006508 ... P50579 26686773 PDBbind: -logKd/Ki=4.30, IC50>50uM
    17634 5d6f:A (1.55) BS01 57R 3.4.11.18 GO:0006508 ... P50579 26686773 PDBbind: -logKd/Ki=4.37, IC50=43uM
    17635 5d6j:A (2.25) BS01 ATP 6.2.1.20 GO:0005524 ... A0R618 26628098 MOAD: Kd=36uM
    PDBbind: -logKd/Ki=4.44, Kd=36uM
    17636 5d6p:A (2.05) BS01 57U 5.6.2.2 GO:0003677 ... P0A0K8 26460684 MOAD: ic50=2.5uM
    PDBbind: -logKd/Ki=5.60, IC50=2.5uM
    BindingDB: IC50=2500nM
    17637 5d6q:B (1.5) BS01 57V 5.6.2.2 GO:0003677 ... P0A0K8 26460684 MOAD: ic50=5.8uM
    PDBbind: -logKd/Ki=5.24, IC50=5.8uM
    BindingDB: IC50=5800nM
    17638 5d75:A (1.83) BS01 FK5 5.2.1.8 GO:0003755 ... Q00688 26749369 MOAD: Ki=200nM
    PDBbind: -logKd/Ki=6.70, Ki=200nM
    17639 5d7a:A (2.9) BS01 58C 2.7.11.1 GO:0004672 ... Q9UKE5 27562646 PDBbind: -logKd/Ki=7.68, IC50=21nM
    17640 5d7c:A (1.55) BS01 57W 5.6.2.2 GO:0003677 ... P0A0K8 26460684 MOAD: ic50=0.14uM
    PDBbind: -logKd/Ki=6.85, IC50=0.14uM
    BindingDB: IC50=140nM
    17641 5d7r:A (1.55) BS02 57Y 5.6.2.2 GO:0003677 ... P0A0K8 26487916 MOAD: ic50=0.013uM
    PDBbind: -logKd/Ki=7.89, IC50=0.013uM
    17642 5d7x:A (1.35) BS01 XZ8 ? N/A P55201 26982797 MOAD: Kd=15uM
    PDBbind: -logKd/Ki=4.82, Kd=15uM
    BindingDB: Kd=15000nM
    17643 5d9k:A (2.55) BS01 584 2.7.11.1 GO:0004672 ... P51812 26270416 PDBbind: -logKd/Ki=8.40, IC50=0.004uM
    BindingDB: IC50=4.0nM
    17644 5d9l:A (2.15) BS01 583 2.7.11.1 GO:0004672 ... P51812 26270416 MOAD: ic50=0.024uM
    PDBbind: -logKd/Ki=7.62, IC50=0.024uM
    17645 5d9p:A (1.8) BS01 NBG ? GO:0000272 ... O06842 26507654 PDBbind: -logKd/Ki=3.20, Kd=0.63mM
    17646 5d9y:A (1.971) BS01 dna 1.14.11.80 GO:0006211 ... Q6N021 26524525 PDBbind: Kd=0.9uM
    17647 5d9y:A (1.971) BS02 dna 1.14.11.80 GO:0006211 ... Q6N021 26524525 PDBbind: Kd=0.9uM
    17648 5da3:A (1.7) BS01 58V 2.7.10.2 GO:0004672 ... Q13882 27993680 MOAD: ic50=80nM
    PDBbind: -logKd/Ki=7.10, IC50=80nM
    BindingDB: IC50=>600nM
    17649 5db0:A (1.5) BS01 58P ? GO:0005634 ... O00255 26744767 MOAD: ic50=46nM
    PDBbind: -logKd/Ki=7.43, IC50=37nM
    17650 5db1:A (1.86) BS01 58O ? GO:0005634 ... O00255 26744767 MOAD: ic50=22nM
    PDBbind: -logKd/Ki=7.66, IC50=22nM
    17651 5db2:A (1.54) BS01 58R ? GO:0005634 ... O00255 26744767 MOAD: ic50=25nM
    PDBbind: -logKd/Ki=7.60, IC50=25nM
    17652 5db3:A (1.71) BS01 58Q ? GO:0005634 ... O00255 26744767 MOAD: ic50=12nM
    PDBbind: -logKd/Ki=7.92, IC50=12nM
    17653 5dbm:A (1.86) BS01 58N 2.3.1.-
    2.3.1.48    		 GO:0004402 ... Q92793 27056325 MOAD: Kd=0.35uM
    PDBbind: -logKd/Ki=6.46, Kd=0.35uM
    BindingDB: IC50=456nM
    17654 5dcz:A (2.23) BS02 59B 2.4.2.-
    2.4.2.30    		 GO:0003950 ... Q9H2K2 N/A PDBbind: -logKd/Ki=9.30, IC50=0.5nM
    17655 5dd9:A (1.62) BS01 59K ? GO:0005634 ... O00255 26288158 MOAD: ic50=779nM
    PDBbind: -logKd/Ki=6.11, IC50=779nM
    BindingDB: IC50=779nM
    17656 5dda:A (1.83) BS01 59M ? GO:0005634 ... O00255 26288158 MOAD: ic50=1653nM
    PDBbind: -logKd/Ki=5.78, IC50=1653nM
    BindingDB: IC50=1653nM
    17657 5ddb:A (1.54) BS01 59Q ? GO:0005634 ... O00255 26288158 MOAD: ic50=82nM
    PDBbind: -logKd/Ki=7.09, IC50=82nM
    BindingDB: IC50=82nM
    17658 5ddc:A (1.62) BS01 59V ? GO:0005634 ... O00255 26288158 MOAD: ic50=92nM
    PDBbind: -logKd/Ki=7.04, IC50=92nM
    BindingDB: IC50=92nM
    17659 5ddd:A (2.14) BS01 59X ? GO:0005634 ... O00255 26288158 MOAD: ic50=260nM
    PDBbind: -logKd/Ki=6.59, IC50=260nM
    BindingDB: IC50=260nM
    17660 5dde:A (1.78) BS01 5A0 ? GO:0005634 ... O00255 26288158 MOAD: ic50=65nM
    PDBbind: -logKd/Ki=7.19, IC50=65nM
    BindingDB: IC50=65nM
    17661 5dde:A (1.78) BS02 5A0 ? GO:0005634 ... O00255 26288158 MOAD: ic50=65nM
    PDBbind: -logKd/Ki=7.19, IC50=65nM
    BindingDB: IC50=65nM
    17662 5ddf:A (1.66) BS01 5A1 ? GO:0005634 ... O00255 26288158 MOAD: ic50=674nM
    PDBbind: -logKd/Ki=6.17, IC50=674nM
    BindingDB: IC50=674nM
    17663 5deu:A (1.801) BS01 dna 1.14.11.80 GO:0006211 ... Q6N021 26524525 PDBbind: Kd=1.08uM
    17664 5deu:A (1.801) BS02 dna 1.14.11.80 GO:0006211 ... Q6N021 26524525 PDBbind: Kd=1.08uM
    17665 5dex:B (2.4) BS01 5E0 ? GO:0015276 ... Q00959 28760974 MOAD: Ki=22.6nM
    PDBbind: -logKd/Ki=7.65, Ki=22.6nM
    17666 5dey:A (2.1) BS01 59T 2.7.11.1 GO:0004672 ... Q13153 26713112 MOAD: Ki=3.7nM
    PDBbind: -logKd/Ki=8.43, Ki=3.7nM
    BindingDB: Ki=3.7nM, IC50=69nM
    17667 5dfp:A (2.2) BS01 59U 2.7.11.1 GO:0004672 ... Q13153 26713112 MOAD: Ki=22nM
    PDBbind: -logKd/Ki=7.66, Ki=22nM
    BindingDB: Ki=22nM, IC50=222nM
    17668 5dg6:A (2.35) BS01 V66 2.7.7.48
    3.4.22.66
    3.6.1.15    		 GO:0004197 ... Q83883 26823007 PDBbind: -logKd/Ki=5.07, IC50=8.6uM
    17669 5dgj:A (1.0) BS01 V64 2.7.7.48
    3.4.22.66
    3.6.1.15    		 GO:0004197 ... Q83883 26823007 PDBbind: -logKd/Ki=4.73, IC50=18.5uM
    17670 5dgm:F (2.86) BS01 59Z 2.5.1.1
    2.5.1.10    		 GO:0004659 ... P14324 26457482 PDBbind: -logKd/Ki=6.40, IC50=0.4uM
    17671 5dgu:A (1.22) BS01 5B7 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P04585 26462551 MOAD: Ki=0.0045nM
    PDBbind: -logKd/Ki=11.35, Ki=0.0045nM
    17672 5dgu:B (1.22) BS01 5B7 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P04585 26462551 PDBbind: -logKd/Ki=11.35, Ki=0.0045nM
    17673 5dgw:A (1.62) BS01 5B5 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P04585 26462551 MOAD: Ki=0.009nM
    PDBbind: -logKd/Ki=11.05, Ki=0.009nM
    17674 5dgw:B (1.62) BS01 5B5 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P04585 26462551 PDBbind: -logKd/Ki=11.05, Ki=0.009nM
    17675 5dgz:A (2.502) BS01 L20 2.7.11.1 GO:0004672 ... P11309 26459208 MOAD: Ki=14nM
    PDBbind: -logKd/Ki=7.85, Ki=14nM
    17676 5dh3:A (2.468) BS01 5BS 2.7.11.1 GO:0004672 ... Q13188 27535619 MOAD: ic50=38.1nM
    PDBbind: -logKd/Ki=7.42, IC50=38.1nM
    17677 5dh4:A (2.2) BS02 5AV 3.1.4.17 GO:0004114 ... Q9Y233 26602277 MOAD: Ki=58nM
    PDBbind: -logKd/Ki=7.24, Ki=58nM
    BindingDB: Ki=58nM
    17678 5dh5:A (2.0) BS02 5AY 3.1.4.17 GO:0004114 ... Q9Y233 26602277 MOAD: Ki=0.23nM
    PDBbind: -logKd/Ki=9.64, Ki=0.23nM
    BindingDB: Ki=0.32nM
    17679 5dhg:A (3.0) BS01 DGV ? GO:0001626 ... P0ABE7
    P41146    		 26526853 PDBbind: -logKd/Ki=9.14, Ki=0.72nM
    17680 5dhh:A (3.004) BS01 DGW ? GO:0001626 ... P0ABE7
    P41146    		 26526853 PDBbind: -logKd/Ki=9.18, Ki=0.66nM
    17681 5dhj:A (2.457) BS01 5E5 2.7.11.1 GO:0004672 ... P11309 26459208 MOAD: Ki=0.2uM
    PDBbind: -logKd/Ki=6.70, Ki=0.2uM
    17682 5dhp:A (2.27) BS01 5AQ 2.7.1.23 GO:0003951 ... Q8Y8D7 27783975 MOAD: Ki=140uM
    PDBbind: -logKd/Ki=3.85, Ki=140uM
    17683 5dhp:A (2.27) BS02 5AQ 2.7.1.23 GO:0003951 ... Q8Y8D7 27783975 MOAD: Ki=140uM
    PDBbind: -logKd/Ki=3.85, Ki=140uM
    17684 5dhq:A (2.29) BS01 5AK 2.7.1.23 GO:0003951 ... Q8Y8D7 27783975 MOAD: Ki=2uM
    PDBbind: -logKd/Ki=5.70, Ki=2uM
    17685 5dhq:A (2.29) BS02 5AK 2.7.1.23 GO:0003951 ... Q8Y8D7 27783975 MOAD: Ki=2uM
    PDBbind: -logKd/Ki=5.70, Ki=2uM
    17686 5dhr:A (2.31) BS01 5AJ 2.7.1.23 GO:0003951 ... Q8Y8D7 27783975 MOAD: Ki=23uM
    PDBbind: -logKd/Ki=4.64, Ki=23uM
    17687 5dhr:A (2.31) BS02 5AJ 2.7.1.23 GO:0003951 ... Q8Y8D7 27783975 MOAD: Ki=23uM
    PDBbind: -logKd/Ki=4.64, Ki=23uM
    17688 5dhs:A (2.62) BS01 5AG 2.7.1.23 GO:0003951 ... Q8Y8D7 27783975 PDBbind: -logKd/Ki=5.22, Ki=6uM
    17689 5dhs:A (2.62) BS02 5AG 2.7.1.23 GO:0003951 ... Q8Y8D7 27783975 PDBbind: -logKd/Ki=5.22, Ki=6uM
    17690 5dht:A (2.59) BS01 5A9 2.7.1.23 GO:0003951 ... Q8Y8D7 27783975 PDBbind: -logKd/Ki=6.00, Ki=1uM
    17691 5dht:A (2.59) BS02 5A9 2.7.1.23 GO:0003951 ... Q8Y8D7 27783975 PDBbind: -logKd/Ki=6.00, Ki=1uM
    17692 5dhu:A (2.33) BS01 5A8 2.7.1.23 GO:0003951 ... Q8Y8D7 27783975 MOAD: Ki=0.5uM
    PDBbind: -logKd/Ki=6.30, Ki=0.5uM
    17693 5dhu:A (2.33) BS02 5A8 2.7.1.23 GO:0003951 ... Q8Y8D7 27783975 MOAD: Ki=0.5uM
    PDBbind: -logKd/Ki=6.30, Ki=0.5uM
    17694 5dhu:C (2.33) BS01 5A8 2.7.1.23 GO:0003951 ... Q8Y8D7 27783975 MOAD: Ki=0.5uM
    PDBbind: -logKd/Ki=6.30, Ki=0.5uM
    17695 5dhu:C (2.33) BS02 5A8 2.7.1.23 GO:0003951 ... Q8Y8D7 27783975 MOAD: Ki=0.5uM
    PDBbind: -logKd/Ki=6.30, Ki=0.5uM
    17696 5di1:A (2.9) BS01 5DF 2.7.11.1 GO:0004672 ... O95819 26617966 PDBbind: -logKd/Ki=7.68, IC50=21nM
    BindingDB: IC50=20nM
    17697 5dia:A (1.964) BS01 5E6 2.7.11.1 GO:0004672 ... P11309 26459208 PDBbind: -logKd/Ki=10.46, Ki=0.035nM
    BindingDB: Ki=0.397nM
    17698 5diq:F (2.1) BS01 5B9 2.5.1.1
    2.5.1.10    		 GO:0004659 ... P14324 26381451 PDBbind: -logKd/Ki=5.17, IC50=6.8uM
    17699 5dit:A (2.25) BS01 5B8 5.2.1.8 GO:0003755 ... Q13451 26419422 MOAD: Ki=0.7uM
    PDBbind: -logKd/Ki=6.15, Ki=0.7uM
    BindingDB: Ki=700nM
    17700 5diu:A (1.3) BS01 5BG 5.2.1.8 GO:0003755 ... Q13451 26954324 MOAD: Ki=0.043uM
    PDBbind: -logKd/Ki=7.37, Ki=0.043uM
    BindingDB: Ki=43nM
    17701 5div:A (1.65) BS01 5BH 5.2.1.8 GO:0003755 ... Q13451 26954324 MOAD: Ki=0.14uM
    PDBbind: -logKd/Ki=6.85, Ki=0.14uM
    BindingDB: Ki=140nM
    17702 5dj5:A (2.4) BS01 GR2 3.1.-.- N/A Q10QA5 26470846 MOAD: ic50=2.5uM
    PDBbind: -logKd/Ki=5.60, IC50=2.5uM
    17703 5djp:F (2.4) BS01 5BJ 2.5.1.1
    2.5.1.10    		 GO:0004659 ... P14324 26381451 PDBbind: -logKd/Ki=5.15, IC50=7.1uM
    17704 5djr:F (2.4) BS01 5BK 2.5.1.1
    2.5.1.10    		 GO:0004659 ... P14324 26381451 PDBbind: -logKd/Ki=4.86, IC50=13.9uM
    17705 5djv:F (2.3) BS01 5BL 2.5.1.1
    2.5.1.10    		 GO:0004659 ... P14324 26381451 PDBbind: -logKd/Ki=7.11, IC50=0.077uM
    17706 5dk4:A (1.9) BS02 5BX 6.1.1.2 GO:0000166 ... P00953 26555258 MOAD: Ki=2nM
    PDBbind: -logKd/Ki=8.70, Ki=2.0nM
    17707 5dkr:A (1.742) BS03 5CZ ? GO:0005509 ... P02638 26727270 MOAD: Kd=6uM
    PDBbind: -logKd/Ki=5.22, Kd=6.0uM
    17708 5dkr:B (1.742) BS01 5CZ ? GO:0005509 ... P02638 26727270 PDBbind: -logKd/Ki=5.22, Kd=6.0uM
    17709 5dl1:A (3.0) BS01 5C2 3.4.21.92 GO:0004176 ... Q2G036 26566002 PDBbind: -logKd/Ki=5.00, IC50<10uM
    17710 5dl1:B (3.0) BS01 5C2 3.4.21.92 GO:0004176 ... Q2G036 26566002 PDBbind: -logKd/Ki=5.00, IC50<10uM
    17711 5dl1:N (3.0) BS01 5C2 3.4.21.92 GO:0004176 ... Q2G036 26566002 PDBbind: -logKd/Ki=5.00, IC50<10uM
    17712 5dls:A (2.15) BS01 5CV 2.7.11.1 GO:0000077 ... O14757 26437226 MOAD: ic50=4.4nM
    PDBbind: -logKd/Ki=8.36, IC50=4.4nM
    17713 5dlv:A (2.0) BS05 5D5 3.1.4.39 GO:0001953 ... Q64610 27075612 MOAD: ic50=10.4uM
    PDBbind: -logKd/Ki=4.98, IC50=10.4uM
    17714 5dlx:A (1.9) BS01 5D2 ? N/A O60885 27219844 MOAD: Kd=2uM
    PDBbind: -logKd/Ki=5.70, Kd=2uM
    17715 5dlz:A (1.7) BS01 5D1 ? N/A O60885 27219844 MOAD: Kd=1.8uM
    PDBbind: -logKd/Ki=5.74, Kd=1.8uM
    17716 5dno:A (1.8) BS01 rna ? GO:0003723 ... O74958 26673708 PDBbind: Kd=1.8uM
    17717 5dnu:A (1.2) BS01 KKN ? GO:0080167 ... A0A0M3PN85 27507097 MOAD: Kd=77.6uM
    PDBbind: -logKd/Ki=4.11, Kd=77.6uM
    17718 5do4:H (1.859) BS01 rna 3.4.21.5 GO:0004252 ... P00734 27566147 PDBbind: Kd=1.8pM
    17719 5do4:L (1.859) BS01 rna 3.4.21.5 GO:0004252 ... P00734 27566147 PDBbind: Kd=1.8pM
    17720 5doh:A (1.05) BS02 5DU 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 28001003 MOAD: Kd=32nM
    PDBbind: -logKd/Ki=7.49, Kd=32nM
    17721 5doh:B (1.05) BS02 5DU 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 28001003 MOAD: Kd=32nM
    PDBbind: -logKd/Ki=7.49, Kd=32nM
    17722 5dp4:A (2.21) BS01 5E8 2.7.7.48
    3.4.22.28
    3.4.22.29
    3.6.1.15    		 GO:0004197 ... A9XG43 26987809 PDBbind: -logKd/Ki=4.20, IC50=62.88uM
    17723 5dp5:A (2.03) BS01 5E9 2.7.7.48
    3.4.22.28
    3.4.22.29
    3.6.1.15    		 GO:0004197 ... A9XG43 26987809 PDBbind: -logKd/Ki=4.73, IC50=18.70uM
    17724 5dp6:A (3.01) BS01 5EB 2.7.7.48
    3.4.22.28
    3.4.22.29
    3.6.1.15    		 GO:0004197 ... A9XG43 26987809 PDBbind: -logKd/Ki=4.83, IC50=14.71uM
    17725 5dp7:A (2.08) BS01 5EC 2.7.7.48
    3.4.22.28
    3.4.22.29
    3.6.1.15    		 GO:0004197 ... A9XG43 26987809 PDBbind: -logKd/Ki=4.56, IC50=27.57uM
    17726 5dp8:A (2.4) BS01 5ED 2.7.7.48
    3.4.22.28
    3.4.22.29
    3.6.1.15    		 GO:0004197 ... A9XG43 26987809 PDBbind: -logKd/Ki=6.36, IC50=0.44uM
    17727 5dp9:A (1.9) BS01 5EX 2.7.7.48
    3.4.22.28
    3.4.22.29
    3.6.1.15    		 GO:0004197 ... A9XG43 26987809 PDBbind: -logKd/Ki=6.08, IC50=0.84uM
    17728 5dpa:A (2.06) BS01 5F2 2.7.7.48
    3.4.22.28
    3.4.22.29
    3.6.1.15    		 GO:0004197 ... A9XG43 26987809 PDBbind: -logKd/Ki=4.65, IC50=22.46uM
    17729 5dpx:A (1.85) BS03 L3B 3.5.2.6 GO:0008270 ... P52700 28505394 PDBbind: -logKd/Ki=4.46, Ki=35uM
    17730 5dq8:A (2.305) BS01 FLF ? N/A Q15562 26592798 MOAD: Kd=73uM
    PDBbind: -logKd/Ki=4.14, Kd=73uM
    17731 5dqc:A (2.4651) BS01 5E7 3.4.23.46 GO:0004190 ... P56817 27347366 MOAD: Ki=45.6nM
    PDBbind: -logKd/Ki=7.34, Ki=45.6nM
    17732 5dqe:A (2.183) BS01 5E4 ? N/A Q15562 26592798 PDBbind: -logKd/Ki=3.63, Kd=234uM
    17733 5dqf:A (2.15) BS02 CZE ? GO:0003677 ... P35747 26896718 MOAD: Kd=253uM
    PDBbind: -logKd/Ki=3.60, Kd=253uM
    17734 5drc:A (2.18) BS03 5ER 2.3.3.9 GO:0000287 ... P9WK17 27738104 PDBbind: -logKd/Ki=5.98, IC50=1.05uM
    17735 5dri:A (2.8) BS02 5EQ 2.3.3.9 GO:0000287 ... P9WK17 27738104 PDBbind: -logKd/Ki=7.70, IC50=0.02uM
    17736 5dro:A (2.01) BS02 ZH2 3.5.1.108 GO:0006796 ... O67648 26912110 PDBbind: -logKd/Ki=10.59, Ki=26pM
    17737 5drq:A (1.63) BS03 5EM 3.5.1.108 GO:0006796 ... P47205 26912110 PDBbind: -logKd/Ki=10.92, Ki=12pM
    17738 5drr:A (1.59) BS03 5EN 3.5.1.108 GO:0006796 ... P47205 26912110 PDBbind: -logKd/Ki=11.46, Ki=3.5pM
    17739 5drs:A (1.1) BS02 5EF 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 28001003 MOAD: Kd=1.1nM
    PDBbind: -logKd/Ki=8.96, Kd=1.1nM
    17740 5drt:A (2.69) BS01 5EG 2.1.1.360 GO:0031151 ... Q8TEK3 27563395 PDBbind: -logKd/Ki=5.36, IC50=4.4uM
    BindingDB: IC50=4400nM
    17741 5dry:A (2.41) BS01 5EK 2.1.1.360 GO:0031151 ... Q8TEK3 27563395 MOAD: ic50=20nM
    PDBbind: -logKd/Ki=7.70, IC50=20nM
    BindingDB: IC50=20nM
    17742 5ds9:A (2.561) BS01 dna ? GO:0000786 ... P0A6R3 26959646 PDBbind: Kd=0.7nM
    17743 5ds9:A (2.561) BS02 dna ? GO:0000786 ... P0A6R3 26959646 PDBbind: Kd=0.7nM
    17744 5ds9:B (2.561) BS01 dna ? GO:0000786 ... P0A6R3 26959646 PDBbind: Kd=0.7nM
    17745 5ds9:B (2.561) BS02 dna ? GO:0000786 ... P0A6R3 26959646 PDBbind: Kd=0.7nM
    17746 5dsx:A (2.41) BS01 5EW 2.1.1.360 GO:0031151 ... Q8TEK3 27563395 MOAD: ic50=10nM
    PDBbind: -logKd/Ki=8.00, IC50=10nM
    BindingDB: IC50=10.0nM
    17747 5dt2:A (2.3) BS01 5EV 2.1.1.360 GO:0031151 ... Q8TEK3 27563395 MOAD: ic50=150nM
    PDBbind: -logKd/Ki=6.82, IC50=150nM
    BindingDB: IC50=150nM
    17748 5dtd:A (2.642) BS01 dna ? GO:0000786 ... P0A6R3 26959646 PDBbind: Kd=2.1nM
    17749 5dtd:A (2.642) BS02 dna ? GO:0000786 ... P0A6R3 26959646 PDBbind: Kd=2.1nM
    17750 5dtd:B (2.642) BS01 dna ? GO:0000786 ... P0A6R3 26959646 PDBbind: Kd=2.1nM
    17751 5dtd:B (2.642) BS02 dna ? GO:0000786 ... P0A6R3 26959646 PDBbind: Kd=2.1nM
    17752 5dtj:A (2.71) BS01 5G8 3.1.1.7 GO:0001919 ... P21836 26350723 PDBbind: -logKd/Ki=4.47, Kd=34uM
    17753 5dtj:A (2.71) BS02 5G8 3.1.1.7 GO:0001919 ... P21836 26350723 PDBbind: -logKd/Ki=4.47, Kd=34uM
    17754 5dtk:A (1.6) BS01 5F3 3.5.2.6 GO:0008658 ... Q6XEC0 27165692 MOAD: Kd=50uM
    PDBbind: -logKd/Ki=4.30, Kd=50uM
    BindingDB: Kd=50000nM, IC50=18000nM
    17755 5dtm:A (2.2) BS01 5F4 2.1.1.360 GO:0031151 ... Q8TEK3 27563394 MOAD: Kd~50uM
    PDBbind: -logKd/Ki=4.30, Kd~50uM
    BindingDB: Kd=50000nM, IC50=320000nM
    17756 5dtq:A (2.61) BS01 5F6 2.1.1.360 GO:0031151 ... Q8TEK3 27563394 PDBbind: -logKd/Ki=3.86, IC50=139uM
    BindingDB: IC50=139000nM
    17757 5dtr:A (2.34) BS01 5F7 2.1.1.360 GO:0031151 ... Q8TEK3 27563394 MOAD: ic50=39uM
    PDBbind: -logKd/Ki=4.41, IC50=39uM
    BindingDB: IC50=39000nM
    17758 5dts:C (1.94016) BS01 5F8 3.5.2.6 GO:0008658 ... Q6XEC0 27165692 MOAD: Kd=280uM
    PDBbind: -logKd/Ki=3.55, Kd=280uM
    BindingDB: IC50=240000nM, Kd=280000nM
    17759 5dtt:C (2.10001) BS01 5F5 3.5.2.6 GO:0008658 ... Q6XEC0 27165692 MOAD: Kd=310uM
    PDBbind: -logKd/Ki=3.51, Kd=310uM
    BindingDB: Kd=310000nM, IC50=250000nM
    17760 5dtw:A (2.439) BS01 5F9 4.2.1.17 GO:0003824 ... P9WNP1 27571973 MOAD: Kd=3.5uM
    PDBbind: -logKd/Ki=5.46, Kd=3.5uM
    17761 5dtw:A (2.439) BS02 5F9 4.2.1.17 GO:0003824 ... P9WNP1 27571973 MOAD: Kd=3.5uM
    PDBbind: -logKd/Ki=5.46, Kd=3.5uM
    17762 5du4:A (1.702) BS01 5FF 4.2.1.17 GO:0003824 ... P9WNP1 27571973 MOAD: Kd=5.6uM
    PDBbind: -logKd/Ki=5.25, Kd=5.6uM
    17763 5du6:A (2.61) BS01 G59 4.2.1.17 GO:0003824 ... P9WNP1 27571973 PDBbind: -logKd/Ki=5.02, Kd=9.6uM
    17764 5du6:C (2.61) BS01 G59 4.2.1.17 GO:0003824 ... P9WNP1 27571973 PDBbind: -logKd/Ki=5.02, Kd=9.6uM
    17765 5du8:A (2.23) BS01 5FK 4.2.1.17 GO:0003824 ... P9WNP1 27571973 MOAD: Kd=1.9uM
    PDBbind: -logKd/Ki=5.72, Kd=1.9uM
    17766 5du8:C (2.23) BS01 5FK 4.2.1.17 GO:0003824 ... P9WNP1 27571973 MOAD: Kd=1.9uM
    PDBbind: -logKd/Ki=5.72, Kd=1.9uM
    17767 5duc:A (2.704) BS01 G51 4.2.1.17 GO:0003824 ... P9WNP1 27571973 PDBbind: -logKd/Ki=6.35, Kd=0.45uM
    17768 5duc:C (2.704) BS01 G51 4.2.1.17 GO:0003824 ... P9WNP1 27571973 PDBbind: -logKd/Ki=6.35, Kd=0.45uM
    17769 5duf:A (1.5) BS01 G7A 4.2.1.17 GO:0003824 ... P9WNP1 27571973 MOAD: ic50=1.8uM
    PDBbind: -logKd/Ki=5.74, IC50=1.8uM
    17770 5dus:A (1.432) BS01 APR 2.7.7.50
    3.4.19.12
    3.4.22.-
    3.4.22.69    		 N/A K9N638 26740631 MOAD: Kd=2.95uM
    PDBbind: -logKd/Ki=5.53, Kd=2.95uM
    17771 5dv2:A (2.07) BS01 C5P 3.1.13.4 GO:0003824 ... Q96LI5 27013054 MOAD: ic50=1250uM
    PDBbind: -logKd/Ki=2.90, IC50=1250uM
    17772 5dv4:A (1.8) BS01 NMY 3.1.13.4 GO:0003824 ... Q96LI5 27013054 MOAD: ic50=3370uM
    PDBbind: -logKd/Ki=2.47, IC50=3370uM
    17773 5dv7:C (3.5) BS01 rna ? GO:0003725 ... Q9Z1X4 26712564 PDBbind: Kd=2.4uM
    17774 5dv7:C (3.5) BS02 rna ? GO:0003725 ... Q9Z1X4 26712564 PDBbind: Kd=2.4uM
    17775 5dva:A (2.50004) BS01 5FL 3.5.2.6 GO:0008658 ... Q6XEC0 27165692 MOAD: Kd=280uM
    PDBbind: -logKd/Ki=3.55, Kd=280uM
    BindingDB: Kd=280000nM, IC50=250000nM
    17776 5dw1:A (1.55) BS01 5GD ? N/A P25440 27282480 MOAD: ic50=0.08uM
    PDBbind: -logKd/Ki=7.10, IC50=0.08uM
    17777 5dw2:A (1.12) BS01 5GD ? N/A O60885 27282480 MOAD: Kd=1.44uM
    PDBbind: -logKd/Ki=5.84, Kd=1.44uM
    BindingDB: IC50=20nM
    17778 5dwa:A (1.5) BS01 dna 3.1.21.4 GO:0004519 ... Q9KHV6 28039325 PDBbind: Kd=0.9nM
    17779 5dwa:A (1.5) BS02 dna 3.1.21.4 GO:0004519 ... Q9KHV6 28039325 PDBbind: Kd=0.9nM
    17780 5dwa:B (1.5) BS01 dna 3.1.21.4 GO:0004519 ... Q9KHV6 28039325 PDBbind: Kd=0.9nM
    17781 5dwa:B (1.5) BS02 dna 3.1.21.4 GO:0004519 ... Q9KHV6 28039325 PDBbind: Kd=0.9nM
    17782 5dwr:A (2.0) BS01 5H7 2.7.11.1 GO:0004672 ... P11309 26505898 MOAD: Ki<0.001uM
    PDBbind: -logKd/Ki=11.22, Ki=6pM
    BindingDB: IC50=6.0nM, Ki=0.006000nM
    17783 5dx4:A (2.3) BS01 E0C ? N/A O60885 26731490 MOAD: Kd=0.137uM
    PDBbind: -logKd/Ki=6.86, Kd=0.137uM
    BindingDB: IC50=410nM, Kd=137nM
    17784 5dxh:A (3.0) BS01 5H2 2.7.11.1
    2.7.1.137
    2.7.1.153    		 GO:0001525 ... P42336 26741947 PDBbind: -logKd/Ki=9.00, Ki=1nM
    BindingDB: Ki=1.000000nM
    17785 5dxt:A (2.25) BS01 5H5 2.7.11.1
    2.7.1.137
    2.7.1.153    		 GO:0001525 ... P42336 26741947 MOAD: Ki=0.2nM
    PDBbind: -logKd/Ki=9.70, Ki=0.2nM
    BindingDB: Ki=0.350nM
    17786 5dxu:A (2.64) BS01 5H5 2.7.1.137
    2.7.1.153    		 GO:0001779 ... O00329 26741947 PDBbind: -logKd/Ki=8.40, Ki=4nM
    BindingDB: Ki=6.94nM
    17787 5dy5:A (1.95) BS02 5GR 2.3.1.-
    2.3.1.286    		 GO:0017136 ... Q8IXJ6 26748890 MOAD: ic50=0.163uM
    PDBbind: -logKd/Ki=6.79, IC50=0.163uM
    BindingDB: IC50=160nM
    17788 5dy7:A (1.69) BS01 5GT ? N/A P55201 27167503 PDBbind: -logKd/Ki=3.70, Kd>200uM
    BindingDB: Kd=>200000nM
    17789 5dya:A (1.65) BS01 5GV ? N/A P55201 27167503 PDBbind: -logKd/Ki=3.70, Kd>200uM
    BindingDB: Kd=>200000nM
    17790 5dyo:A (2.36) BS01 FLU N/A N/A N/A 26756394 PDBbind: -logKd/Ki=10.21, Kd=61pM
    17791 5dyo:B (2.36) BS01 FLU N/A N/A N/A 26756394 PDBbind: -logKd/Ki=10.21, Kd=61pM
    17792 5dyo:B (2.36) BS02 FLU N/A N/A N/A 26756394 PDBbind: -logKd/Ki=10.21, Kd=61pM
    17793 5dyt:A (2.55) BS03 5HB 3.1.1.8 GO:0004104 ... P06276 28000737 PDBbind: -logKd/Ki=7.60, IC50=25nM
    17794 5dyw:A (2.5) BS03 5HF 3.1.1.8 GO:0004104 ... P06276 28000737 MOAD: ic50=4.9nM
    PDBbind: -logKd/Ki=8.31, IC50=4.9nM
    BindingDB: IC50=4.9nM
    17795 5dyy:A (2.65) BS02 5HH 3.1.1.8 GO:0004104 ... P06276 28000737 PDBbind: -logKd/Ki=7.24, IC50=56.9nM
    17796 5e08:H (2.38) BS01 rna N/A N/A N/A 27593161 PDBbind: Kd=10nM
    17797 5e08:L (2.38) BS01 rna N/A N/A N/A 27593161 PDBbind: Kd=10nM
    17798 5e0g:A (1.2) BS01 5LG 2.7.7.48
    3.4.22.66
    3.6.1.15    		 GO:0004197 ... Q83883 27235842 PDBbind: -logKd/Ki=5.80, IC50=1.6uM
    17799 5e0h:A (1.95) BS01 5LH 2.7.7.48
    3.4.22.66
    3.6.1.15    		 GO:0004197 ... Q83883 27235842 PDBbind: -logKd/Ki=5.62, IC50=2.4uM
    17800 5e0j:A (1.2) BS01 5LJ 2.7.7.48
    3.4.22.66
    3.6.1.15    		 GO:0004197 ... Q83883 27235842 PDBbind: -logKd/Ki=5.21, IC50=6.1uM
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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