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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 24809 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    16201 4uyh:A (1.73) BS01 9S3 ? N/A P25440 25249180 MOAD: ic50=0.00000001M
    PDBbind: -logKd/Ki=6.30, IC50=0.50uM
    BindingDB: IC50=501nM
    16202 4uyn:A (1.9) BS01 Y3M 2.7.11.1 GO:0004672 ... O14965 25369539 MOAD: ic50=4nM
    PDBbind: -logKd/Ki=8.40, IC50=4nM
    16203 4uzb:A (2.865) BS01 dna ? GO:0003677 ... Q9QR71 25947153 PDBbind: Kd=72nM
    16204 4uzb:A (2.865) BS02 dna ? GO:0003677 ... Q9QR71 25947153 PDBbind: Kd=72nM
    16205 4uzb:B (2.865) BS01 dna ? GO:0003677 ... Q9QR71 25947153 PDBbind: Kd=72nM
    16206 4uzb:B (2.865) BS02 dna ? GO:0003677 ... Q9QR71 25947153 PDBbind: Kd=72nM
    16207 4uzd:A (3.2) BS01 QMN 2.7.11.1 GO:0000212 ... O14965 25369539 PDBbind: -logKd/Ki=9.22, IC50=0.6nM
    BindingDB: IC50=0.600000nM, EC50=106nM
    16208 4uzd:B (3.2) BS01 QMN 2.7.11.1 GO:0000212 ... O14965 25369539 PDBbind: -logKd/Ki=9.22, IC50=0.6nM
    BindingDB: IC50=0.600000nM, EC50=106nM
    16209 4uzh:A (2.0) BS01 JVE 2.7.11.1 GO:0004672 ... O14965 25369539 MOAD: ic50=9800nM
    PDBbind: -logKd/Ki=5.01, IC50=9800nM
    BindingDB: IC50=9800nM
    16210 4v01:A (2.33) BS01 0LI 2.7.10.1 GO:0004672 ... P11362 25465127 PDBbind: -logKd/Ki=8.11, Kd=7.7nM
    16211 4v04:A (2.12) BS01 0LI N/A GO:0004672 ... N/A 25465127 MOAD: Kd=7.7nM
    PDBbind: -logKd/Ki=8.11, Kd=7.7nM
    16212 4v05:A (2.57) BS01 66T N/A GO:0004672 ... N/A 25465127 PDBbind: -logKd/Ki=9.70, Kd=0.2nM
    16213 4v0i:A (2.54) BS01 J82 2.7.1.137
    2.7.1.153    		 GO:0016301 ... O35904 27144736 PDBbind: -logKd/Ki=6.33, IC50=468nM
    16214 4v1f:A (1.697) BS01 BQ1 N/A GO:0015078 ... N/A 26601184 PDBbind: -logKd/Ki=7.70, IC50~20nM
    16215 4v1f:A (1.697) BS02 BQ1 N/A GO:0015078 ... N/A 26601184 PDBbind: -logKd/Ki=7.70, IC50~20nM
    16216 4v24:A (1.8) BS01 GYR 2.3.1.-
    2.7.1.91    		 GO:0000287 ... Q9NYA1 25516793 MOAD: Ki=4.3nM
    PDBbind: -logKd/Ki=8.37, Ki=4.3nM
    BindingDB: Ki=3.6nM, IC50=28nM, Kd=5.0nM
    16217 4v25:A (2.6) BS02 SZ6 2.7.11.2 GO:0004672 ... Q15119 25404640 PDBbind: -logKd/Ki=7.08, IC50=84nM
    BindingDB: IC50=80nM
    16218 4v27:A (1.9) BS01 MAN 3.2.1.130 GO:0004559 ... D6D1V7 25487964 PDBbind: -logKd/Ki=6.66, Kd=217nM
    16219 4v27:A (1.9) BS02 IFM 3.2.1.130 GO:0004559 ... D6D1V7 25487964 PDBbind: -logKd/Ki=6.66, Kd=217nM
    16220 4vgc:C (2.1) BS02 SRD 3.4.21.1 GO:0004252 ... P00766 9425066 PDBbind: -logKd/Ki=6.90, Ki=0.127uM
    16221 4w4s:A (2.0) BS01 B29 ? N/A Q45222 25269599 MOAD: ic50=9.5uM
    PDBbind: -logKd/Ki=5.02, IC50=9.5uM
    16222 4w4v:A (2.01) BS01 3H8 2.7.11.24 GO:0004672 ... P53779 25623238 MOAD: ic50=866nM
    PDBbind: -logKd/Ki=6.94, IC50=115nM
    BindingDB: IC50=866nM
    16223 4w4w:A (1.9) BS01 3HJ 2.7.11.24 GO:0004672 ... P53779 25623238 MOAD: ic50=6630nM
    PDBbind: -logKd/Ki=7.46, IC50=34.7nM
    16224 4w4x:A (2.65) BS01 3HN 2.7.11.24 GO:0004672 ... P53779 25623238 PDBbind: -logKd/Ki=6.99, IC50=102.8nM
    16225 4w4y:A (2.3) BS01 3HQ 2.7.11.24 GO:0004672 ... P53779 25623238 MOAD: ic50=3034nM
    PDBbind: -logKd/Ki=6.46, IC50=344.8nM
    16226 4w52:A (1.5001) BS01 BNZ 3.2.1.17 GO:0003796 ... P00720 25847998 MOAD: Kd=175uM
    PDBbind: -logKd/Ki=3.76, Kd=175uM
    16227 4w53:A (1.56) BS01 MBN 3.2.1.17 GO:0003796 ... P00720 25847998 MOAD: Kd=102uM
    PDBbind: -logKd/Ki=3.99, Kd=102uM
    BindingDB: Kd=102000nM
    16228 4w54:A (1.7901) BS01 PYJ 3.2.1.17 GO:0003796 ... P00720 25847998 MOAD: Kd=68uM
    PDBbind: -logKd/Ki=4.17, Kd=68uM
    16229 4w55:A (1.6401) BS01 3H0 3.2.1.17 GO:0003796 ... P00720 25847998 MOAD: Kd=18uM
    PDBbind: -logKd/Ki=4.74, Kd=18uM
    16230 4w57:A (1.6801) BS01 N4B 3.2.1.17 GO:0003796 ... P00720 25847998 MOAD: Kd=14uM
    PDBbind: -logKd/Ki=4.85, Kd=14uM
    16231 4w5j:A (1.65) BS01 AP5 2.7.4.3 GO:0004017 ... Q04ML5 25372811 PDBbind: -logKd/Ki=7.24, Kd=57nM
    16232 4w7p:A (2.8) BS01 3J7 2.7.11.1 GO:0004672 ... Q13464 25248678 PDBbind: -logKd/Ki=7.49, IC50=32nM
    BindingDB: IC50=32nM
    16233 4w7t:A (1.8) BS01 3JC 3.6.4.10 GO:0005524 ... P07900 25368984 MOAD: ic50=0.9uM
    PDBbind: -logKd/Ki=6.05, IC50=0.9uM
    16234 4w97:A (1.6) BS01 UCA ? GO:0000976 ... P9WMB9 25406313 MOAD: Kd=0.08uM
    PDBbind: -logKd/Ki=7.10, Kd=0.08uM
    16235 4w9c:C (2.2) BS01 3JG ? N/A P40337 25166285 MOAD: Kd=22.2uM
    PDBbind: -logKd/Ki=4.65, Kd=22.2uM
    BindingDB: Kd=22200nM
    16236 4w9d:C (2.2) BS01 3JK ? N/A P40337 25166285 MOAD: Kd=10.2uM
    PDBbind: -logKd/Ki=4.99, Kd=10.2uM
    BindingDB: Kd=10200nM
    16237 4w9e:C (2.6) BS01 3JT ? N/A P40337 25166285 PDBbind: -logKd/Ki=5.15, Kd=7.09uM
    BindingDB: Kd=7090nM
    16238 4w9f:C (2.1) BS01 3JU ? N/A P40337 25166285 MOAD: Kd=3.27uM
    PDBbind: -logKd/Ki=5.49, Kd=3.27uM
    BindingDB: Kd=3270nM
    16239 4w9g:C (2.7) BS01 3JV ? N/A P40337 25166285 PDBbind: -logKd/Ki=5.26, Kd=5.53uM
    BindingDB: Kd=6530nM
    16240 4w9h:C (2.1) BS01 3JF ? N/A P40337 25166285 MOAD: Kd=0.185uM
    PDBbind: -logKd/Ki=6.73, Kd=0.185uM
    BindingDB: Kd=185nM, IC50=696nM
    16241 4w9i:C (2.4) BS01 3JS ? N/A P40337 25166285 MOAD: Kd=1.1uM
    PDBbind: -logKd/Ki=5.96, Kd=1.10uM
    BindingDB: Kd=1100nM
    16242 4w9j:C (2.2) BS01 3JH ? N/A P40337 25166285 MOAD: Kd=0.588uM
    PDBbind: -logKd/Ki=6.23, Kd=0.588uM
    BindingDB: Kd=588nM
    16243 4w9k:C (2.1) BS01 3JO ? N/A P40337 25166285 MOAD: Kd=0.291uM
    PDBbind: -logKd/Ki=6.54, Kd=0.291uM
    BindingDB: Kd=291nM
    16244 4w9l:C (2.2) BS01 3JJ ? N/A P40337 25166285 MOAD: Kd=9.52uM
    PDBbind: -logKd/Ki=5.02, Kd=9.52uM
    BindingDB: Kd=9520nM
    16245 4w9n:A (1.84) BS01 TCL 1.1.1.100
    1.3.1.39
    2.3.1.38
    2.3.1.39
    2.3.1.41
    2.3.1.85
    3.1.2.14
    4.2.1.59    		 GO:0016491 ... P49327 25301948 PDBbind: -logKd/Ki=4.26, IC50=54.7uM
    16246 4w9n:B (1.84) BS01 TCL 1.1.1.100
    1.3.1.39
    2.3.1.38
    2.3.1.39
    2.3.1.41
    2.3.1.85
    3.1.2.14
    4.2.1.59    		 GO:0016491 ... P49327 25301948 MOAD: ic50=54.7uM
    PDBbind: -logKd/Ki=4.26, IC50=54.7uM
    16247 4w9o:A (1.27) BS01 3JQ 5.2.1.8 GO:0003755 ... Q13451 25412894 PDBbind: -logKd/Ki=7.77, Ki=17nM
    16248 4w9p:A (1.5) BS01 3JR 5.2.1.8 GO:0003755 ... Q13451 25412894 PDBbind: -logKd/Ki=7.80, Ki=16nM
    16249 4w9q:A (1.08) BS01 3JP 5.2.1.8 GO:0003755 ... Q13451 25412894 PDBbind: -logKd/Ki=6.85, IC50=140nM
    16250 4w9s:A (1.8) BS03 3K1 3.1.-.- GO:0003723 ... P13166 25225968 MOAD: ic50=0.15uM
    PDBbind: -logKd/Ki=6.82, IC50=0.15uM
    16251 4w9w:A (1.72) BS01 YDJ 2.7.11.1 GO:0004672 ... Q9NSY1 26853940 PDBbind: -logKd/Ki=7.48, Kd=33.1nM
    16252 4w9w:A (1.72) BS02 YDJ 2.7.11.1 GO:0004672 ... Q9NSY1 26853940 PDBbind: -logKd/Ki=7.48, Kd=33.1nM
    16253 4w9x:A (2.14) BS01 3JW 2.7.11.1 GO:0004672 ... Q9NSY1 26853940 PDBbind: -logKd/Ki=7.40, Kd=39.8nM
    16254 4wa9:B (2.2) BS01 AXI 2.7.10.2 GO:0004672 ... P00519 25686603 MOAD: Ki=3800pM
    PDBbind: -logKd/Ki=8.42, Ki=3800pM
    16255 4waf:A (2.39) BS01 3K6 2.7.11.1
    2.7.1.137
    2.7.1.153    		 GO:0001525 ... P42336 25589927 PDBbind: -logKd/Ki=5.00, IC50>=10uM
    BindingDB: IC50=>10000nM
    16256 4wag:A (3.407) BS01 3K7 2.7.1.67 GO:0016301 ... Q9UBF8 25897704 PDBbind: -logKd/Ki=7.08, IC50=0.083uM
    16257 4wbg:A (1.9) BS01 AZR 3.5.2.6 GO:0008800 ... Q51578 26055361 PDBbind: -logKd/Ki=5.55, Ki=2.85uM
    16258 4wbo:A (2.81) BS01 ANW 2.7.11.14 GO:0001750 ... P28327 25340299 PDBbind: -logKd/Ki=4.20, IC50=63.10uM
    16259 4wcf:A (1.93) BS02 3KN ? GO:0000166 ... O76290 28983525 PDBbind: -logKd/Ki=4.28, Ki=53uM
    16260 4wcu:A (2.35) BS01 3KQ 3.1.4.53 GO:0004114 ... Q08499 24984230 MOAD: ic50=3nM
    PDBbind: -logKd/Ki=8.52, IC50=3nM
    BindingDB: IC50=3.0nM
    16261 4wet:A (1.63) BS01 WEF 1.8.4.2 GO:0015036 ... A0A0H2UL03 25556635 MOAD: Kd=444uM
    PDBbind: -logKd/Ki=3.35, Kd=444uM
    16262 4wey:A (1.55) BS01 EG6 1.8.4.2 GO:0015036 ... A0A0H2UL03 25556635 PDBbind: -logKd/Ki=3.50, Kd=318uM
    16263 4wf2:A (2.31) BS01 BTX 6.3.4.15 GO:0000976 ... P06709 25746672 PDBbind: -logKd/Ki=8.10, Kd=8.03nM
    BindingDB: Ki=87nM, Kd=1.5nM
    16264 4wf4:B (1.7) BS01 WF4 1.8.4.2 GO:0015036 ... A0A0H2UL03 25556635 MOAD: Kd=777uM
    PDBbind: -logKd/Ki=3.11, Kd=777uM
    16265 4wf6:A (2.6521) BS02 407 3.4.24.83 GO:0008237 ... P15917 26492514 PDBbind: -logKd/Ki=6.30, IC50=0.5uM
    BindingDB: IC50=1600nM
    16266 4wgi:A (1.85) BS03 3M6 ? GO:0008643 ... P0AEY0
    Q07820    		 25516789 PDBbind: -logKd/Ki=5.35, IC50=4.5uM
    16267 4wh7:A (1.62) BS01 8H8 3.1.3.48 GO:0004725 ... P30305 25423142 MOAD: ic50>5mM
    PDBbind: -logKd/Ki=2.30, IC50>5mM
    16268 4wh9:A (1.5) BS01 3M8 3.1.3.48 GO:0004725 ... P30305 25423142 MOAD: ic50=2.2mM
    PDBbind: -logKd/Ki=3.00, IC50=1mM
    16269 4whq:A (1.78) BS01 3N8 1.13.11.3 GO:0003824 ... P00436 25548185 PDBbind: -logKd/Ki=4.12, Kd=75uM
    16270 4whr:A (1.58) BS01 3N8 1.13.11.3 GO:0003824 ... P00436 25548185 PDBbind: -logKd/Ki=4.12, Kd=75uM
    16271 4whs:A (1.35) BS01 3N8 1.13.11.3 GO:0003824 ... P00436 25548185 PDBbind: -logKd/Ki=4.12, Kd=75uM
    16272 4whs:A (1.35) BS02 3N8 1.13.11.3 GO:0003824 ... P00436 25548185 PDBbind: -logKd/Ki=4.12, Kd=75uM
    16273 4whz:A (1.79) BS01 3NL 2.7.11.24 GO:0004672 ... P53779 25393557 MOAD: ic50<1nM
    PDBbind: -logKd/Ki=9.00, IC50<1nM
    BindingDB: IC50=<1.000000nM
    16274 4wi1:A (1.65) BS01 3O6 6.1.1.15 GO:0000166 ... Q8I5R7 27798837 MOAD: ic50=5uM
    PDBbind: -logKd/Ki=5.30, IC50=5uM
    16275 4wiv:A (1.56) BS01 3P2 ? N/A O60885 25314271 MOAD: Kd=550nM
    PDBbind: -logKd/Ki=6.26, Kd=550nM
    BindingDB: IC50=637nM, Kd=550nM
    16276 4wk1:A (1.98) BS01 2BA ? GO:0046872 ... A0A0H2WXZ7 25435171 MOAD: Kd=109nM
    PDBbind: -logKd/Ki=5.89, Kd=1.3uM
    16277 4wk7:A (1.24) BS05 3PQ 3.4.24.82 GO:0004222 ... O75173 25415648 MOAD: ic50=74nM
    PDBbind: -logKd/Ki=7.13, IC50=74nM
    BindingDB: IC50=74nM
    16278 4wkb:A (1.37) BS01 TDI 3.2.2.9 GO:0003824 ... A5F5R2 25806409 MOAD: Ki=2.7pM
    PDBbind: -logKd/Ki=11.57, Ki=2.7pM
    16279 4wkb:B (1.37) BS01 TDI 3.2.2.9 GO:0003824 ... A5F5R2 25806409 MOAD: Ki=2.7pM
    PDBbind: -logKd/Ki=11.57, Ki=2.7pM
    16280 4wkc:A (1.64) BS01 BIG 3.2.2.9 GO:0003824 ... A7ZHQ1 25806409 MOAD: Ki=0.21pM
    PDBbind: -logKd/Ki=12.68, Ki=0.21pM
    16281 4wke:A (1.62) BS05 3PU 3.4.24.82 GO:0004222 ... O75173 25415648 MOAD: ic50=8nM
    PDBbind: -logKd/Ki=8.10, Kd=8nM
    BindingDB: IC50=8.0nM
    16282 4wki:A (1.6) BS05 3PW 3.4.24.82 GO:0004222 ... O75173 25415648 MOAD: ic50=5nM
    PDBbind: -logKd/Ki=8.30, IC50=5nM
    BindingDB: IC50=3.0nM
    16283 4wkn:A (2.0) BS01 TDI 3.2.2.30
    3.2.2.9    		 GO:0003824 ... Q9ZMY2 26494017 MOAD: Ki=0.19nM
    PDBbind: -logKd/Ki=9.72, Ki=0.19nM
    16284 4wkp:A (1.58) BS01 3QA 3.2.2.30
    3.2.2.9    		 GO:0003824 ... Q9ZMY2 26494017 PDBbind: -logKd/Ki=9.55, Ki=0.28nM
    16285 4wkp:A (1.58) BS02 3QA 3.2.2.30
    3.2.2.9    		 GO:0003824 ... Q9ZMY2 26494017 PDBbind: -logKd/Ki=9.55, Ki=0.28nM
    16286 4wkp:B (1.58) BS01 3QA 3.2.2.30
    3.2.2.9    		 GO:0003824 ... Q9ZMY2 26494017 PDBbind: -logKd/Ki=9.55, Ki=0.28nM
    16287 4wkp:B (1.58) BS02 3QA 3.2.2.30
    3.2.2.9    		 GO:0003824 ... Q9ZMY2 26494017 PDBbind: -logKd/Ki=9.55, Ki=0.28nM
    16288 4wkt:C (1.782) BS01 BUB 3.5.1.97 GO:0016787 ... Q9I194 25290020 MOAD: Ki=0.00055M
    PDBbind: -logKd/Ki=3.26, Ki=0.55mM
    16289 4wku:B (2.0) BS01 3QJ 3.5.1.97 GO:0016787 ... Q9I194 25290020 PDBbind: -logKd/Ki=5.68, Ki=2.1uM
    16290 4wkv:C (2.1434) BS01 3QK 3.5.1.97 GO:0016787 ... Q9I194 25290020 PDBbind: -logKd/Ki=6.79, Ki=0.161uM
    16291 4wlb:A (1.702) BS02 3QQ ? GO:0003677 ... P51449 25453817 MOAD: ic50=0.18uM
    PDBbind: -logKd/Ki=6.74, IC50=0.18uM
    BindingDB: IC50=180nM, EC50=520nM
    16292 4wm9:A (2.4) BS01 NXL ? GO:0008658 ... Q8RLA6 25406838 PDBbind: -logKd/Ki=6.92, Kd=0.12uM
    16293 4wmc:A (2.3) BS01 NXL 3.5.2.6 GO:0008658 ... Q6XEC0 25406838 PDBbind: -logKd/Ki=8.05, Kd=9nM
    16294 4wmu:A (1.55) BS03 19H ? GO:0005515 ... P0AEX9
    Q07820    		 25909780 MOAD: Kd=0.18uM
    PDBbind: -logKd/Ki=6.74, Kd=0.18uM
    16295 4wmv:A (2.4) BS03 3R4 ? GO:0005515 ... P0AEX9
    Q07820    		 25909780 MOAD: Kd=93uM
    PDBbind: -logKd/Ki=4.03, Kd=93uM
    16296 4wmx:A (2.0) BS03 3R7 ? GO:0005515 ... P0AEX9
    Q07820    		 25909780 MOAD: Kd=14.1uM
    PDBbind: -logKd/Ki=4.85, Kd=14.1uM
    16297 4wmy:A (1.601) BS04 3S6 ? GO:0001934 ... Q8WWA0 26148048 MOAD: Kd=85nM
    PDBbind: -logKd/Ki=7.07, Kd=85nM
    16298 4wn0:A (2.2) BS05 G3P ? GO:0005509 ... Q5PPM0 26755729 MOAD: ic50=0.6mM
    PDBbind: -logKd/Ki=3.22, IC50=0.6mM
    16299 4wn1:A (3.13) BS02 3SJ 3.1.4.17 GO:0004114 ... Q9Y233 25515954 PDBbind: -logKd/Ki=8.29, IC50=5.1nM
    16300 4wnk:A (2.42) BS01 453 2.7.11.16 GO:0004672 ... P43249 26032411 MOAD: ic50=0.38uM
    PDBbind: -logKd/Ki=6.42, IC50=0.38uM
    16301 4wnm:A (2.5) BS01 3RT 2.7.10.2 GO:0004672 ... P43405 26756335 MOAD: Ki=18nM
    PDBbind: -logKd/Ki=7.59, IC50=0.026uM
    16302 4wno:A (1.56) BS01 3RF 2.7.11.1 GO:0004672 ... O75385 25551253 MOAD: ic50=160nM
    PDBbind: -logKd/Ki=6.80, IC50=160nM
    16303 4wnp:A (1.88) BS01 3RJ 2.7.11.1 GO:0004672 ... O75385 25551253 MOAD: ic50=8nM
    PDBbind: -logKd/Ki=8.10, IC50=8nM
    16304 4wop:A (2.393) BS01 CTP 6.3.3.3 GO:0000287 ... P9WPQ5 25801336 MOAD: Kd=17.2uM
    PDBbind: -logKd/Ki=4.76, Kd=17.2uM
    16305 4wov:A (1.8) BS01 3SM 2.7.10.2 GO:0004672 ... P29597 25762719 MOAD: ic50=72nM
    PDBbind: -logKd/Ki=7.14, Ki=72nM
    16306 4wp7:A (1.8) BS01 3SR 1.2.1.19
    1.2.1.28
    1.2.1.3
    1.2.1.36    		 GO:0000166 ... P00352 25634381 MOAD: ic50=0.8uM
    PDBbind: -logKd/Ki=6.10, IC50=0.80uM
    BindingDB: IC50=800nM, Ki=720nM
    16307 4wpf:A (2.202) BS02 3SN ? GO:0003677 ... P51449 25815138 MOAD: ic50=0.25uM
    PDBbind: -logKd/Ki=6.60, IC50=0.25uM
    BindingDB: EC50=69nM, IC50=249nM
    16308 4wpn:A (1.95) BS01 3ST 1.2.1.19
    1.2.1.28
    1.2.1.3
    1.2.1.36    		 GO:0000166 ... P00352 25634381 MOAD: ic50=0.21uM
    PDBbind: -logKd/Ki=6.68, IC50=210nM
    BindingDB: IC50=210nM, Ki=96nM
    16309 4wq2:A (1.64) BS01 3SU ? GO:0005509 ... P04632 28757975 MOAD: ic50=0.5uM
    PDBbind: -logKd/Ki=6.30, IC50=0.5uM
    16310 4wq3:A (1.79) BS05 3SU ? GO:0005509 ... P04632 28757975 MOAD: ic50=0.1uM
    PDBbind: -logKd/Ki=7.00, IC50=0.10uM
    16311 4wq3:A (1.79) BS06 3SU ? GO:0005509 ... P04632 28757975 MOAD: ic50=0.1uM
    PDBbind: -logKd/Ki=7.00, IC50=0.10uM
    16312 4wr7:A (1.5) BS02 3TV 4.2.1.1
    4.2.1.69    		 GO:0004064 ... P00915 26079542 MOAD: Kd=0.002nM
    PDBbind: -logKd/Ki=11.70, Kd=0.002nM
    BindingDB: Kd=0.033nM
    16313 4wr8:B (2.6) BS01 3TX 5.3.2.1
    5.3.3.12    		 GO:0001516 ... P14174 25697265 PDBbind: -logKd/Ki=6.23, Ki=0.59uM
    BindingDB: Ki=590nM, Kd=260nM
    16314 4wr8:C (2.6) BS01 3TX 5.3.2.1
    5.3.3.12    		 GO:0001516 ... P14174 25697265 PDBbind: -logKd/Ki=6.23, Ki=0.59uM
    BindingDB: Ki=590nM, Kd=260nM
    16315 4wrb:A (1.81) BS01 3TW 5.3.2.1
    5.3.3.12    		 GO:0001516 ... P14174 25697265 MOAD: Ki=0.65uM
    PDBbind: -logKd/Ki=6.19, Ki=0.65uM
    BindingDB: Ki=570nM
    16316 4wrb:C (1.81) BS01 3TW 5.3.2.1
    5.3.3.12    		 GO:0001516 ... P14174 25697265 PDBbind: -logKd/Ki=6.19, Ki=0.65uM
    BindingDB: Ki=570nM
    16317 4wri:A (1.4) BS01 OKA ? N/A Q2MHR1 25965326 PDBbind: -logKd/Ki=9.01, Kd=0.97nM
    16318 4wrs:A (2.2) BS01 3U1 2.7.11.1 GO:0004672 ... P11309 25597005 MOAD: ic50=0.4nM
    PDBbind: -logKd/Ki=9.40, IC50=0.4nM
    BindingDB: IC50=0.400000nM
    16319 4wsj:A (1.64) BS01 3U3 ? GO:0004560 ... Q8A3I4 29142681 PDBbind: -logKd/Ki=7.33, IC50=46.8nM
    16320 4wsk:A (1.92) BS01 3U2 ? GO:0004560 ... Q8A3I4 29142681 PDBbind: -logKd/Ki=6.43, IC50=371.6nM
    16321 4wsy:A (2.3) BS01 3U5 2.7.11.1 GO:0004672 ... P11309 25616902 MOAD: ic50=0.017uM
    PDBbind: -logKd/Ki=7.77, IC50=0.017uM
    16322 4wt2:A (1.42) BS01 3UD 2.3.2.27 GO:0005634 ... Q00987 25384157 MOAD: Kd=38pM
    PDBbind: -logKd/Ki=10.42, Kd=38pM
    BindingDB: IC50=0.600000nM, Kd=257nM
    16323 4wt6:A (2.3) BS01 3U6 2.7.11.1 GO:0004672 ... P11309 25616902 MOAD: ic50=0.012uM
    PDBbind: -logKd/Ki=7.92, IC50=0.012uM
    BindingDB: IC50=111nM
    16324 4wtu:A (1.85) BS01 3UT 3.4.23.46 GO:0004190 ... P56817 25699151 MOAD: ic50=0.3nM
    PDBbind: -logKd/Ki=9.52, IC50=0.3nM
    BindingDB: IC50=3.0nM
    16325 4wu4:A (2.3) BS01 dna N/A N/A N/A 25897118 PDBbind: Kd=0.39uM
    16326 4wu4:B (2.3) BS01 dna N/A N/A N/A 25897118 PDBbind: Kd=0.39uM
    16327 4wu4:B (2.3) BS02 dna N/A N/A N/A 25897118 PDBbind: Kd=0.39uM
    16328 4wul:A (2.4) BS01 dna N/A N/A N/A 25897118 PDBbind: Kd=21.9uM
    16329 4wul:A (2.4) BS02 dna N/A N/A N/A 25897118 PDBbind: Kd=21.9uM
    16330 4wul:B (2.4) BS01 dna N/A N/A N/A 25897118 PDBbind: Kd=21.9uM
    16331 4wul:B (2.4) BS02 dna N/A N/A N/A 25897118 PDBbind: Kd=21.9uM
    16332 4wup:A (1.75) BS02 3UF 4.2.1.1
    4.2.1.69    		 GO:0004064 ... P00915 26079542 MOAD: Kd=0.15nM
    PDBbind: -logKd/Ki=9.82, Kd=0.15nM
    BindingDB: Kd=790nM
    16333 4wuy:A (1.63) BS01 3UJ 2.1.1.-
    2.1.1.354    		 GO:0000122 ... Q9NRG4 25825497 MOAD: ic50<15nM
    PDBbind: -logKd/Ki=7.82, IC50<15nM
    BindingDB: IC50=<15nM
    16334 4wvl:A (2.41) BS01 3US 2.1.1.360 GO:0031151 ... Q8TEK3 25397901 PDBbind: -logKd/Ki=6.88, Kd=131nM
    16335 4ww6:A (1.06) BS02 3TV 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 26079542 MOAD: Kd=0.062nM
    PDBbind: -logKd/Ki=10.21, Kd=0.062nM
    BindingDB: Kd=0.91nM
    16336 4ww6:A (1.06) BS03 3TV 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 26079542 MOAD: Kd=0.062nM
    PDBbind: -logKd/Ki=10.21, Kd=0.062nM
    BindingDB: Kd=0.91nM
    16337 4ww8:A (1.42) BS02 VD9 4.2.1.1 GO:0004089 ... O43570 26079542 MOAD: Kd=0.067nM
    PDBbind: -logKd/Ki=10.17, Kd=0.067nM
    BindingDB: Kd=400nM
    16338 4wwn:A (2.7) BS01 3VC 2.7.11.1
    2.7.1.137
    2.7.1.153
    2.7.1.154    		 GO:0016301 ... P48736 25469863 PDBbind: -logKd/Ki=6.07, IC50=0.85uM
    16339 4wwo:A (2.3) BS01 3VD 2.7.11.1
    2.7.1.137
    2.7.1.153
    2.7.1.154    		 GO:0016301 ... P48736 25469863 MOAD: ic50=0.038uM
    PDBbind: -logKd/Ki=7.42, IC50=0.0380uM
    16340 4wwp:A (2.4) BS01 3VE 2.7.11.1
    2.7.1.137
    2.7.1.153
    2.7.1.154    		 GO:0016301 ... P48736 25469863 MOAD: ic50=0.12uM
    PDBbind: -logKd/Ki=6.92, IC50=0.12uM
    16341 4wx4:A (1.03) BS02 3VF 3.4.22.39 GO:0003677 ... B9A5C1 25571794 PDBbind: -logKd/Ki=9.22, IC50=0.0006uM
    16342 4wx6:A (2.15) BS02 3VK 3.4.22.39 GO:0003677 ... B9A5C1 25571794 PDBbind: -logKd/Ki=9.00, IC50<0.001uM
    16343 4wx7:A (2.4) BS02 3VJ 3.4.22.39 GO:0003677 ... B9A5C1 25571794 PDBbind: -logKd/Ki=7.40, IC50=0.04uM
    16344 4wxi:A (2.6) BS01 3VM 3.4.21.27 GO:0004252 ... P03951 25592713 PDBbind: -logKd/Ki=8.08, Ki=8.4nM
    16345 4wy1:A (1.98) BS01 3VO 3.4.23.46 GO:0004190 ... P56817 25695670 MOAD: ic50=5.1uM
    PDBbind: -logKd/Ki=5.29, IC50=5.1uM
    BindingDB: IC50=5100nM
    16346 4wy3:A (1.89) BS01 3X5 2.1.1.-
    2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0008233 ... P0C6X7 25614110 MOAD: ic50=240uM
    PDBbind: -logKd/Ki=3.62, IC50=240uM
    BindingDB: IC50=240000nM
    16347 4wy6:A (2.1) BS01 3VP 3.4.23.46 GO:0004190 ... P56817 25695670 MOAD: ic50=1.07uM
    PDBbind: -logKd/Ki=5.97, IC50=1.07uM
    BindingDB: IC50=1070nM
    16348 4wyo:B (2.89) BS01 3W2 6.3.4.14
    6.4.1.2    		 GO:0003989 ... Q00955 25423286 PDBbind: -logKd/Ki=6.95, IC50=111nM
    16349 4wyo:B (2.89) BS02 3W2 6.3.4.14
    6.4.1.2    		 GO:0003989 ... Q00955 25423286 PDBbind: -logKd/Ki=6.95, IC50=111nM
    16350 4wyo:C (2.89) BS01 3W2 6.3.4.14
    6.4.1.2    		 GO:0003989 ... Q00955 25423286 PDBbind: -logKd/Ki=6.95, IC50=111nM
    16351 4wyo:C (2.89) BS02 3W2 6.3.4.14
    6.4.1.2    		 GO:0003989 ... Q00955 25423286 PDBbind: -logKd/Ki=6.95, IC50=111nM
    16352 4wyp:A (1.502) BS01 AMP 4.6.1.18 GO:0003676 ... P61823 26655472 MOAD: Kd=440uM
    PDBbind: -logKd/Ki=3.36, Kd=440uM
    16353 4wyy:A (1.28) BS01 3VT 3.5.2.6 GO:0008800 ... P24735 27622821 PDBbind: -logKd/Ki=6.00, IC50=1uM
    16354 4wyz:A (1.449) BS01 U3P 4.6.1.18 GO:0003676 ... P61823 26655472 MOAD: Kd=50uM
    PDBbind: -logKd/Ki=4.30, Kd=50uM
    BindingDB: Ki=78500nM
    16355 4wz4:A (1.05) BS01 3VU 3.5.2.6 GO:0008800 ... P24735 27622821 PDBbind: -logKd/Ki=6.44, IC50=0.36uM
    16356 4wz5:A (1.6) BS01 3VU 3.5.2.6 GO:0008658 ... P14489 27622821 PDBbind: -logKd/Ki=5.51, IC50=3.1uM
    16357 4wz6:A (2.05) BS01 ATP 5.6.1.6 GO:0005524 ... P13569 26444971 MOAD: Kd=1.4uM
    PDBbind: -logKd/Ki=5.60, Kd=2.5uM
    16358 4wz8:B (2.23) BS01 3W7 6.3.4.14
    6.4.1.2    		 GO:0003989 ... Q00955 25423286 PDBbind: -logKd/Ki=7.21, IC50=62nM
    16359 4wz8:B (2.23) BS02 3W7 6.3.4.14
    6.4.1.2    		 GO:0003989 ... Q00955 25423286 PDBbind: -logKd/Ki=7.21, IC50=62nM
    16360 4wz8:C (2.23) BS01 3W7 6.3.4.14
    6.4.1.2    		 GO:0003989 ... Q00955 25423286 PDBbind: -logKd/Ki=7.21, IC50=62nM
    16361 4wz8:C (2.23) BS02 3W7 6.3.4.14
    6.4.1.2    		 GO:0003989 ... Q00955 25423286 PDBbind: -logKd/Ki=7.21, IC50=62nM
    16362 4wzv:A (1.65) BS01 E40 3.4.24.35 GO:0004222 ... P14780 26263024 MOAD: ic50=0.43nM
    PDBbind: -logKd/Ki=9.37, IC50=0.43nM
    BindingDB: IC50=0.430000nM
    16363 4wzv:A (1.65) BS07 E40 3.4.24.35 GO:0004222 ... P14780 26263024 MOAD: ic50=0.43nM
    PDBbind: -logKd/Ki=9.37, IC50=0.43nM
    BindingDB: IC50=0.430000nM
    16364 4wzw:A (2.9516) BS01 dna ? GO:0003723 ... Q15397 25512524 PDBbind: Kd=84.1nM
    16365 4x0f:A (3.22) BS02 ROL 3.1.4.53 GO:0004114 ... Q07343 25775568 PDBbind: -logKd/Ki=7.00, Kd=101nM
    16366 4x0f:B (3.22) BS02 ROL 3.1.4.53 GO:0004114 ... Q07343 25775568 PDBbind: -logKd/Ki=7.00, Kd=101nM
    16367 4x0u:A (1.95) BS01 3W9 1.2.1.3
    1.2.1.31
    1.2.1.8    		 GO:0004029 ... P49419 25554827 PDBbind: -logKd/Ki=7.40, Ki=0.04uM
    16368 4x0z:C (1.85) BS01 GAL ? GO:0005198 ... P90498 25855729 PDBbind: -logKd/Ki=3.15, Kd=0.7mM
    16369 4x0z:C (1.85) BS02 SIA ? GO:0005198 ... P90498 25855729 PDBbind: -logKd/Ki=3.15, Kd=0.7mM
    16370 4x11:A (2.3) BS01 SIA ? GO:0005198 ... P90498 25855729 PDBbind: -logKd/Ki=2.22, Kd=6mM
    16371 4x11:B (2.3) BS01 SIA ? GO:0005198 ... P90498 25855729 PDBbind: -logKd/Ki=2.22, Kd=6mM
    16372 4x13:B (2.0) BS01 SIA ? GO:0005198 ... P90498 25855729 PDBbind: -logKd/Ki=3.30, Kd=0.5mM
    16373 4x13:C (2.0) BS01 SIA ? GO:0005198 ... P90498 25855729 PDBbind: -logKd/Ki=3.30, Kd=0.5mM
    16374 4x14:B (2.3) BS01 GAL ? GO:0005198 ... P03089 25855729 PDBbind: -logKd/Ki=2.92, Kd=1.2mM
    16375 4x14:B (2.3) BS02 SIA ? GO:0005198 ... P03089 25855729 PDBbind: -logKd/Ki=2.92, Kd=1.2mM
    16376 4x14:C (2.3) BS01 GAL ? GO:0005198 ... P03089 25855729 PDBbind: -logKd/Ki=2.92, Kd=1.2mM
    16377 4x14:C (2.3) BS02 SIA ? GO:0005198 ... P03089 25855729 PDBbind: -logKd/Ki=2.92, Kd=1.2mM
    16378 4x1f:A (2.0) BS01 3WF ? GO:0003677 ... O75469 26333997 MOAD: Kd=10.8nM
    PDBbind: -logKd/Ki=7.97, Kd=10.8nM
    16379 4x21:A (1.95) BS01 3WH 2.7.11.24 GO:0004672 ... P53779 26505827 MOAD: Kd=36nM
    PDBbind: -logKd/Ki=7.44, Kd=36nM
    16380 4x23:A (3.5) BS01 dna ? GO:0000786 ... P02299 23723239 PDBbind: Kd=0.1uM
    16381 4x23:A (3.5) BS02 dna ? GO:0000786 ... P02299 23723239 PDBbind: Kd=0.1uM
    16382 4x23:B (3.5) BS01 dna ? GO:0003677 ... P84040 23723239 PDBbind: Kd=0.1uM
    16383 4x23:B (3.5) BS02 dna ? GO:0003677 ... P84040 23723239 PDBbind: Kd=0.1uM
    16384 4x23:C (3.5) BS01 dna ? GO:0000786 ... P84051 23723239 PDBbind: Kd=0.1uM
    16385 4x23:C (3.5) BS02 dna ? GO:0000786 ... P84051 23723239 PDBbind: Kd=0.1uM
    16386 4x23:D (3.5) BS01 dna ? GO:0000786 ... P02283 23723239 PDBbind: Kd=0.1uM
    16387 4x23:D (3.5) BS02 dna ? GO:0000786 ... P02283 23723239 PDBbind: Kd=0.1uM
    16388 4x23:E (3.5) BS01 dna ? GO:0000786 ... P02299 23723239 PDBbind: Kd=0.1uM
    16389 4x23:E (3.5) BS02 dna ? GO:0000786 ... P02299 23723239 PDBbind: Kd=0.1uM
    16390 4x23:F (3.5) BS01 dna ? GO:0003677 ... P84040 23723239 PDBbind: Kd=0.1uM
    16391 4x23:F (3.5) BS02 dna ? GO:0003677 ... P84040 23723239 PDBbind: Kd=0.1uM
    16392 4x23:G (3.5) BS01 dna ? GO:0000786 ... P84051 23723239 PDBbind: Kd=0.1uM
    16393 4x23:G (3.5) BS02 dna ? GO:0000786 ... P84051 23723239 PDBbind: Kd=0.1uM
    16394 4x23:H (3.5) BS01 dna ? GO:0000786 ... P02283 23723239 PDBbind: Kd=0.1uM
    16395 4x23:H (3.5) BS02 dna ? GO:0000786 ... P02283 23723239 PDBbind: Kd=0.1uM
    16396 4x23:K (3.5) BS01 dna ? GO:0000786 ... P02299 23723239 PDBbind: Kd=0.1uM
    16397 4x23:K (3.5) BS02 dna ? GO:0000786 ... P02299 23723239 PDBbind: Kd=0.1uM
    16398 4x23:L (3.5) BS01 dna ? GO:0003677 ... P84040 23723239 PDBbind: Kd=0.1uM
    16399 4x23:L (3.5) BS02 dna ? GO:0003677 ... P84040 23723239 PDBbind: Kd=0.1uM
    16400 4x23:M (3.5) BS01 dna ? GO:0000786 ... P84051 23723239 PDBbind: Kd=0.1uM
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218